Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

207862 .. 208961

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atgtctataaccaaagatgttggttccagttctcaagtgcaagaagtggattttcagaaagataagaacagcaacaaggatgcaggtggtgaaccaagcctacatcaacgtgacgaaaatgataagcttaaagatgaggttgatgcagatgaagaggatgagcttgccacattcaaatgtcacaaagaattagttcttggccctaagttttctctcaaggagcagcttgagaaggataaagagtgccctgaacttgtgctgccgattccattcaccaacaaaccaaagagcaatcttttcacactcaaaggaggaagcaagttccggaccaaattcacatttactgtctcaaaaaacattgtctcaggcctcaagttcaccgcctctgtctggaagactggtgtcaaagtgcatagttcaaaaagaatgcttggaacctttagtcctcgaccagatccttatacgtatgaaatcgaagaagagactaccccttcaggcatgcttgcaaggggcaagtattttgtgagaataaaatttctggatgatgatgttaaatgctatttggattctagttactactttgaaatccagaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

199

Amino Acids

22.7

Weight (kDa)

6.35

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	74
Acc36I	ACCTGC	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	324
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	449
AcsI	RAATTY	2 cut(s)	332, 533
AcuI	CTGAAG	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	390
AgsI	TTSAA	3 cut(s)	175, 420, 584
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AloI	GAACNNNNNNTCC	2 cut(s)	427, 459
AluBI	AGCT	3 cut(s)	127, 163, 226
AluI	AGCT	3 cut(s)	127, 163, 226
Alw26I	GTCTC	3 cut(s)	352, 367, 476
AlwI	GGATC	1 cut(s)	449
Aor13HI	TCCGGA	1 cut(s)	324
AoxI	GGCC	2 cut(s)	199, 367
ApeKI	GCWGC	2 cut(s)	223, 259
ApoI	RAATTY	2 cut(s)	332, 533
Asp700I	GAANNNNTTC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	200, 327
AsuHPI	GGTGA	3 cut(s)	101, 265, 370
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	248
BbsI	GAAGAC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	235, 246
BcoDI	GTCTC	3 cut(s)	352, 367, 476
BfaI	CTAG	2 cut(s)	570, 598
BfuAI	ACCTGC	1 cut(s)	74
BisI	GCNGC	2 cut(s)	224, 260
BlsI	GCNGC	2 cut(s)	225, 261
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	200, 327
BmiI	GGNNCC	2 cut(s)	25, 436
BmsI	GCATC	2 cut(s)	70, 133
BoxI	GACNNNNGTC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	401
BpuEI	CTTGAG	4 cut(s)	18, 200, 248, 356
BsaAI	YACGTR	1 cut(s)	465
BsaWI	WCCGGW	1 cut(s)	324
Bsc4I	CCNNNNNNNGG	1 cut(s)	390
Bse1I	ACTGG	2 cut(s)	27, 403
BseAI	TCCGGA	1 cut(s)	324
BseGI	GGATG	3 cut(s)	85, 163, 547
BseLI	CCNNNNNNNGG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	378
BseNI	ACTGG	2 cut(s)	27, 403
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	235, 246
BshFI	GGCC	2 cut(s)	201, 369
BsiSI	CCGG	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	390
BsmAI	GTCTC	3 cut(s)	352, 367, 476
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	201, 369
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp13I	TCCGGA	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	454
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	2 cut(s)	201, 369
BspCNI	CTCAG	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	25, 436
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	449
BsrI	ACTGG	2 cut(s)	27, 403
BssMI	GATC	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	2 cut(s)	147, 474
BstBAI	YACGTR	1 cut(s)	465
BstC8I	GCNNGC	3 cut(s)	165, 500, 504
BstDEI	CTNAG	2 cut(s)	204, 364
BstF5I	GGATG	3 cut(s)	85, 163, 547
BstKTI	GATC	1 cut(s)	457
BstMAI	GTCTC	3 cut(s)	352, 367, 476
BstMBI	GATC	1 cut(s)	454
BstNSI	RCATGY	1 cut(s)	502
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSLI	GKGCMC	1 cut(s)	248
BstSNI	TACGTA	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	235, 246
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	201, 369
BtsCI	GGATG	3 cut(s)	85, 163, 547
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	3 cut(s)	165, 500, 504
Cfr13I	GGNCC	2 cut(s)	200, 327
CviAII	CATG	1 cut(s)	499
CviJI	RGCY	6 cut(s)	99, 127, 163, 201, 226, 369
CviKI_1	RGCY	6 cut(s)	99, 127, 163, 201, 226, 369
DdeI	CTNAG	2 cut(s)	204, 364
DpnI	GATC	1 cut(s)	456
DpnII	GATC	1 cut(s)	454
Eam1104I	CTCTTC	2 cut(s)	147, 474
EarI	CTCTTC	2 cut(s)	147, 474
Eco105I	TACGTA	1 cut(s)	465
Eco147I	AGGCCT	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	477
FaeI	CATG	1 cut(s)	502
FaiI	YATR	5 cut(s)	8, 414, 462, 468, 500
FatI	CATG	1 cut(s)	498
Fnu4HI	GCNGC	2 cut(s)	224, 260
FokI	GGATG	3 cut(s)	92, 170, 554
Fsp4HI	GCNGC	2 cut(s)	224, 260
FspBI	CTAG	2 cut(s)	570, 598
GluI	GCNGC	2 cut(s)	224, 260
HaeIII	GGCC	2 cut(s)	201, 369
HapII	CCGG	1 cut(s)	325
Hin1II	CATG	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	2 cut(s)	265, 566
HpaII	CCGG	1 cut(s)	325
HphI	GGTGA	3 cut(s)	101, 265, 370
Hpy166II	GTNNAC	2 cut(s)	92, 378
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	4 cut(s)	325, 391, 539, 589
Hpy8I	GTNNAC	2 cut(s)	92, 378
HpyAV	CCTTC	2 cut(s)	226, 501
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	109, 464
HpyCH4V	TGCA	5 cut(s)	40, 83, 146, 412, 506
HpyF3I	CTNAG	2 cut(s)	204, 364
HpySE526I	ACGT	2 cut(s)	109, 464
Hsp92II	CATG	1 cut(s)	502
Kpn2I	TCCGGA	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	454
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	2 cut(s)	235, 246
LweI	GCATC	2 cut(s)	70, 133
MaeI	CTAG	2 cut(s)	570, 598
MaeII	ACGT	2 cut(s)	109, 464
MaeIII	GTNAC	3 cut(s)	110, 179, 572
MalI	GATC	1 cut(s)	456
MboI	GATC	1 cut(s)	454
MboII	GAAGA	4 cut(s)	164, 406, 488, 491
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	3 cut(s)	188, 332, 533
MnlI	CCTC	6 cut(s)	130, 148, 305, 380, 394, 456
MroI	TCCGGA	1 cut(s)	324
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	2 cut(s)	129, 552
MslI	CAYNNNNRTG	2 cut(s)	108, 175
MspI	CCGG	1 cut(s)	325
Mva1269I	GAATGC	1 cut(s)	432
NdeII	GATC	1 cut(s)	454
NlaIII	CATG	1 cut(s)	502
NlaIV	GGNNCC	2 cut(s)	25, 436
NmuCI	GTSAC	2 cut(s)	110, 179
NspI	RCATGY	1 cut(s)	502
PaeI	GCATGC	1 cut(s)	502
PaqCI	CACCTGC	1 cut(s)	74
PceI	AGGCCT	1 cut(s)	369
PctI	GAATGC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	265, 566
PkrI	GCNGC	2 cut(s)	225, 261
Ppu21I	YACGTR	1 cut(s)	465
PshAI	GACNNNNGTC	1 cut(s)	401
PspN4I	GGNNCC	2 cut(s)	25, 436
PspPI	GGNCC	2 cut(s)	200, 327
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
PsuI	RGATCY	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	108, 175
SaqAI	TTAA	2 cut(s)	129, 552
SatI	GCNGC	2 cut(s)	224, 260
Sau3AI	GATC	1 cut(s)	454
Sau96I	GGNCC	2 cut(s)	200, 327
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	8 cut(s)	88, 112, 129, 141, 165, 228, 440, 467
SfaNI	GCATC	2 cut(s)	70, 133
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	2 cut(s)	108, 175
SmlI	CTYRAG	4 cut(s)	33, 215, 227, 371
SmoI	CTYRAG	4 cut(s)	33, 215, 227, 371
SnaBI	TACGTA	1 cut(s)	465
SphI	GCATGC	1 cut(s)	502
Sse9I	AATT	3 cut(s)	188, 332, 533
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	2 cut(s)	570, 598
StuI	AGGCCT	1 cut(s)	369
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	112, 467
TaqI	TCGA	2 cut(s)	448, 474
TasI	AATT	3 cut(s)	188, 332, 533
TfiI	GAWTC	2 cut(s)	265, 566
Tru1I	TTAA	2 cut(s)	129, 552
Tru9I	TTAA	2 cut(s)	129, 552
TseFI	GTSAC	2 cut(s)	110, 179
TseI	GCWGC	2 cut(s)	223, 259
Tsp45I	GTSAC	2 cut(s)	110, 179
TspDTI	ATGAA	2 cut(s)	165, 483
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	2 cut(s)	332, 533
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	2 cut(s)	570, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.