Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

129758 .. 130869

Gene Structure 1112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atggaagctatgtctgtaaccaaagatgttggtttcagttctcaagttcaggaagtggagtttaagaatgataagaacaacaacaaggatgcaggtggtgaaccaagcctgcatcaacgtgacgaaaatgatgagcttaaacatgaggttgttccagatgaagaggatgagcttgccacattcaaatgtgacaaagaattggttcttggccctaagttttctttcaaggagcagcttgagaaggataaagagcagcctgaacttgtgctgtcgattccattcaccaacaaaccaaagagcaatcttttcacactcaaaggaggaagcaagttccggaccaaattcacattcactgtctcaaaaaacattgtctcaggcctcatgtccaccgcctcagtctggaagactggtgtcaaagtgcacagttcaaaaagaacgcttggaacctttagtcctcgaccagatccttatacgtatgaaactgaagaagaaactaccccttcaggcatgtttgcaaggggtaggtattttgtgaaaacaaaatatctggatgatgatggaaaatgctatttggatgctagttactactttgaaatccagaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

202

Amino Acids

23.04

Weight (kDa)

5.56

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	333
AciI	CCGC	1 cut(s)	390
AclWI	GGATC	1 cut(s)	458
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	486, 504
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	4 cut(s)	184, 226, 429, 593
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 332, 364
AloI	GAACNNNNNNTCC	2 cut(s)	436, 468
AluBI	AGCT	4 cut(s)	8, 136, 172, 235
AluI	AGCT	4 cut(s)	8, 136, 172, 235
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	2 cut(s)	361, 376
Alw44I	GTGCAC	1 cut(s)	419
AlwI	GGATC	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	333
AoxI	GGCC	2 cut(s)	208, 376
ApaLI	GTGCAC	1 cut(s)	419
ApeKI	GCWGC	2 cut(s)	232, 253
ApoI	RAATTY	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	209, 336
AsuHPI	GGTGA	2 cut(s)	110, 274
AvaII	GGWCC	1 cut(s)	336
BaeGI	GKGCMC	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	244, 265
BccI	CCATC	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	361, 376
BfaI	CTAG	2 cut(s)	579, 607
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	2 cut(s)	233, 254
BlsI	GCNGC	2 cut(s)	234, 255
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	209, 336
BmiI	GGNNCC	1 cut(s)	445
BmsI	GCATC	3 cut(s)	79, 121, 565
BoxI	GACNNNNGTC	1 cut(s)	410
BpiI	GAAGAC	1 cut(s)	410
BpuEI	CTTGAG	2 cut(s)	27, 257
BsaAI	YACGTR	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	333
BseGI	GGATG	4 cut(s)	94, 172, 556, 580
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	387, 408
BseNI	ACTGG	1 cut(s)	412
BseSI	GKGCMC	1 cut(s)	423
BseXI	GCAGC	2 cut(s)	244, 265
BshFI	GGCC	2 cut(s)	210, 378
BsiHKAI	GWGCWC	1 cut(s)	423
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmAI	GTCTC	2 cut(s)	361, 376
BsnI	GGCC	2 cut(s)	210, 378
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp13I	TCCGGA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	463
BspACI	CCGC	1 cut(s)	390
BspANI	GGCC	2 cut(s)	210, 378
BspCNI	CTCAG	2 cut(s)	386, 407
BspEI	TCCGGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	355, 425
Bst6I	CTCTTC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	474
BstC8I	GCNNGC	2 cut(s)	110, 174
BstDEI	CTNAG	3 cut(s)	213, 373, 394
BstF5I	GGATG	4 cut(s)	94, 172, 556, 580
BstKTI	GATC	1 cut(s)	466
BstMAI	GTCTC	2 cut(s)	361, 376
BstMBI	GATC	1 cut(s)	463
BstNSI	RCATGY	1 cut(s)	511
BstPAI	GACNNNNGTC	1 cut(s)	410
BstSLI	GKGCMC	1 cut(s)	423
BstSNI	TACGTA	1 cut(s)	474
BstV1I	GCAGC	2 cut(s)	244, 265
BstV2I	GAAGAC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	2 cut(s)	210, 378
BtsCI	GGATG	4 cut(s)	94, 172, 556, 580
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	110, 174
Cfr13I	GGNCC	2 cut(s)	209, 336
CviAII	CATG	3 cut(s)	143, 382, 508
CviJI	RGCY	8 cut(s)	8, 108, 136, 172, 210, 235, 256, 378
CviKI_1	RGCY	8 cut(s)	8, 108, 136, 172, 210, 235, 256, 378
DdeI	CTNAG	3 cut(s)	213, 373, 394
DpnI	GATC	1 cut(s)	465
DpnII	GATC	1 cut(s)	463
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco105I	TACGTA	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	378
Eco47I	GGWCC	1 cut(s)	336
Eco57I	CTGAAG	2 cut(s)	486, 504
FaeI	CATG	3 cut(s)	146, 385, 511
FaiI	YATR	6 cut(s)	11, 144, 383, 471, 477, 509
FatI	CATG	3 cut(s)	142, 381, 507
Fnu4HI	GCNGC	2 cut(s)	233, 254
FokI	GGATG	4 cut(s)	101, 179, 563, 587
Fsp4HI	GCNGC	2 cut(s)	233, 254
FspBI	CTAG	2 cut(s)	579, 607
GluI	GCNGC	2 cut(s)	233, 254
HaeIII	GGCC	2 cut(s)	210, 378
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	3 cut(s)	146, 385, 511
HinfI	GANTC	1 cut(s)	274
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	110, 274
Hpy166II	GTNNAC	3 cut(s)	101, 387, 421
Hpy188III	TCNNGA	6 cut(s)	50, 155, 334, 400, 548, 598
Hpy8I	GTNNAC	3 cut(s)	101, 387, 421
HpyAV	CCTTC	2 cut(s)	235, 510
HpyCH4III	ACNGT	2 cut(s)	355, 425
HpyCH4IV	ACGT	2 cut(s)	118, 473
HpyCH4V	TGCA	4 cut(s)	92, 112, 421, 515
HpyF3I	CTNAG	3 cut(s)	213, 373, 394
HpySE526I	ACGT	2 cut(s)	118, 473
Hsp92II	CATG	3 cut(s)	146, 385, 511
Kpn2I	TCCGGA	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	463
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	244, 265
LweI	GCATC	3 cut(s)	79, 121, 565
MaeI	CTAG	2 cut(s)	579, 607
MaeII	ACGT	2 cut(s)	118, 473
MaeIII	GTNAC	4 cut(s)	16, 119, 188, 581
MalI	GATC	1 cut(s)	465
MboI	GATC	1 cut(s)	463
MboII	GAAGA	4 cut(s)	173, 415, 497, 500
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	2 cut(s)	197, 341
MnlI	CCTC	6 cut(s)	139, 157, 314, 389, 403, 465
MroI	TCCGGA	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	2 cut(s)	63, 138
MslI	CAYNNNNRTG	2 cut(s)	117, 184
MspI	CCGG	1 cut(s)	334
NdeII	GATC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	146, 385, 511
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	2 cut(s)	119, 188
NspI	RCATGY	1 cut(s)	511
PaqCI	CACCTGC	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	274
PkrI	GCNGC	2 cut(s)	234, 255
Ppu21I	YACGTR	1 cut(s)	474
PshAI	GACNNNNGTC	1 cut(s)	410
PspN4I	GGNNCC	1 cut(s)	445
PspPI	GGNCC	2 cut(s)	209, 336
PsuI	RGATCY	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	117, 184
SaqAI	TTAA	2 cut(s)	63, 138
SatI	GCNGC	2 cut(s)	233, 254
Sau3AI	GATC	1 cut(s)	463
Sau96I	GGNCC	2 cut(s)	209, 336
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	3 cut(s)	79, 121, 565
SinI	GGWCC	1 cut(s)	336
SmiMI	CAYNNNNRTG	2 cut(s)	117, 184
SmlI	CTYRAG	2 cut(s)	42, 236
SmoI	CTYRAG	2 cut(s)	42, 236
SnaBI	TACGTA	1 cut(s)	474
Sse9I	AATT	2 cut(s)	197, 341
SseBI	AGGCCT	1 cut(s)	378
SsiI	CCGC	1 cut(s)	390
SspMI	CTAG	2 cut(s)	579, 607
StuI	AGGCCT	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	355, 425
TaiI	ACGT	2 cut(s)	121, 476
TaqI	TCGA	2 cut(s)	272, 457
TasI	AATT	2 cut(s)	197, 341
TfiI	GAWTC	1 cut(s)	274
Tru1I	TTAA	2 cut(s)	63, 138
Tru9I	TTAA	2 cut(s)	63, 138
TscAI	CASTG	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	119, 188
TseI	GCWGC	2 cut(s)	232, 253
Tsp45I	GTSAC	2 cut(s)	119, 188
TspDTI	ATGAA	2 cut(s)	174, 492
TspRI	CASTG	1 cut(s)	358
VneI	GTGCAC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	336
XapI	RAATTY	1 cut(s)	341
XceI	RCATGY	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	2 cut(s)	579, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.