Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003947

Physical Location & Seq

Genomic Coordinates Forward (+)

32258279 .. 32259389

Gene Structure 1111 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAAGCTATGTCTGTAACCAAAGATGTTGGTTTCAGTTCTCAAGTTCAGGAAGTGGAGTTTAAGAATGATAAGAACAACAACAAGGATGCAGGTGGTGAACCAAGCCTGCATCAACGTGATGAAAATGATGAGCTTAAACATGAGGTTGATCCAGATGAAGAGGATGAGCTTGCCACATTCAAATGTGACAAAGAATTGGTTCTTGGCCCTAAGTTTTCTTTCAAGGAGCAGCTTGAGAAGGATAAAGATGATAAGAGCTTGAGGAAATGGAAGCAGCAACTTCCTGGGAATGTTAATCTCTCTGCACTAGCTAGTAAAGACGCAGAAGTGCGGATTTTAAGTATGACACTGATGTTCCAGGAGCAGCCTGAACTTGTGTTGTCGATTCCATTCACCAACAAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCGGACCAAATTCACATTCACTGTCTCAAAAAACATTGTCTCAGGGCTCATGTCCACCGCCTCAGTCTGGAAGACTGGTGTCAAAGTGCACATTTCAAAAAGAACGCTTGGAACCTTTAGTCCTCGACCAGATCCTTATACGTATGAAACTGAAGAAGAAACTACCCCTTCAGGCATGTTTGCAAGGGGTAGGTATTTTGTGAAAACAAAATATCTGGATGATGATGGAAAATGCTATTTGGATGCTAGTTACTACTTTGAAATCCAGAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0007275 GO:0008150 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0016043 GO:0016049 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0048364 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0090558 GO:0090627 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04722 ko04962 map04722 map04962

Pfam Domains

Protein Families

Rho_GDI

Protein Analysis

240

Amino Acids

27.4

Weight (kDa)

5.79

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	56 - 240	2.3e-65	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003947)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12520 FvH4_4g12520
malus_domestica	MD04G1025800.v1.1
prunus_persica	Prupe.1G175100_v2.0.a1 Prupe.1G175100_v2.0.a1
pyrus_communis	pycom04g02190
rosa_chinensis	RchiOBHm_Chr4g0411301 RchiOBHm_Chr4g0411311 RchiOBHm_Chr4g0411341
rosa_laevigata	RLG00000008364 RLG00000008367
rosa_multiflora	Rmu_sc0000543.1_g000034 Rmu_sc0000543.1_g000044 Rmu_sc0000543.1_g000052
rosa_roxburghii	Rroxscaffold_5G00355880 Rroxscaffold_5G00355930
rosa_rugosa	Rorug04G0110100 Rorug04G0110200
rosa_samantha	Rh4AG166700 Rh4AG167200 Rh4BG163700 Rh4BG164300 Rh4CG178500 Rh4CG178900 Rh4DG161500 Rh4DG161600 Rh4DG162000
rosa_wichuraiana	Rw0G005520 Rw4G013790 Rw4G013800 Rw4G013820 Rw4G013900 Rw4G013920 Rw5G041000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	83
Acc36I	ACCTGC	1 cut(s)	83
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	2 cut(s)	334, 504
AclWI	GGATC	2 cut(s)	146, 572
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	2 cut(s)	600, 618
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	4 cut(s)	184, 226, 543, 707
AjnI	CCWGG	2 cut(s)	286, 360
AjuI	GAANNNNNNNTTGG	4 cut(s)	189, 221, 446, 478
AloI	GAACNNNNNNTCC	2 cut(s)	550, 582
AluBI	AGCT	6 cut(s)	8, 136, 172, 235, 261, 314
AluI	AGCT	6 cut(s)	8, 136, 172, 235, 261, 314
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	475, 490
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	146, 572
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	1 cut(s)	208
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	3 cut(s)	232, 277, 367
ApoI	RAATTY	1 cut(s)	455
Asp700I	GAANNNNTTC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	209, 450
AsuHPI	GGTGA	2 cut(s)	110, 388
AvaII	GGWCC	1 cut(s)	450
BaeGI	GKGCMC	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	495
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	244, 289, 379
BccI	CCATC	1 cut(s)	665
BciT130I	CCWGG	2 cut(s)	288, 362
BcoDI	GTCTC	2 cut(s)	475, 490
BfaI	CTAG	4 cut(s)	311, 315, 693, 721
BfuAI	ACCTGC	1 cut(s)	83
BisI	GCNGC	3 cut(s)	233, 278, 368
BlsI	GCNGC	3 cut(s)	234, 279, 369
Bme1390I	CCNGG	2 cut(s)	288, 362
Bme18I	GGWCC	1 cut(s)	450
BmgT120I	GGNCC	2 cut(s)	209, 450
BmiI	GGNNCC	1 cut(s)	559
BmrFI	CCNGG	2 cut(s)	288, 362
BmsI	GCATC	3 cut(s)	79, 121, 679
BoxI	GACNNNNGTC	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	524
BpuEI	CTTGAG	3 cut(s)	27, 257, 283
BsaAI	YACGTR	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	287
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	526
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	288, 362
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	4 cut(s)	94, 172, 670, 694
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMII	CTCAG	2 cut(s)	501, 522
BseNI	ACTGG	1 cut(s)	526
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	3 cut(s)	244, 289, 379
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	2 cut(s)	475, 490
BsnI	GGCC	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	495, 537
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	151, 577
BspACI	CCGC	2 cut(s)	334, 504
BspANI	GGCC	1 cut(s)	210
BspCNI	CTCAG	2 cut(s)	500, 521
BspEI	TCCGGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	146, 572
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	151, 577
Bst2UI	CCWGG	2 cut(s)	288, 362
Bst4CI	ACNGT	1 cut(s)	469
Bst6I	CTCTTC	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	588
BstC8I	GCNNGC	2 cut(s)	110, 174
BstDEI	CTNAG	3 cut(s)	213, 487, 508
BstF5I	GGATG	4 cut(s)	94, 172, 670, 694
BstKTI	GATC	2 cut(s)	154, 580
BstMAI	GTCTC	2 cut(s)	475, 490
BstMBI	GATC	2 cut(s)	151, 577
BstNI	CCWGG	2 cut(s)	288, 362
BstNSI	RCATGY	1 cut(s)	625
BstPAI	GACNNNNGTC	1 cut(s)	524
BstSCI	CCNGG	2 cut(s)	286, 360
BstSLI	GKGCMC	1 cut(s)	537
BstSNI	TACGTA	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	244, 289, 379
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuRI	GGCC	1 cut(s)	210
BtsCI	GGATG	4 cut(s)	94, 172, 670, 694
BtsIMutI	CAGTG	2 cut(s)	350, 465
BveI	ACCTGC	1 cut(s)	83
Cac8I	GCNNGC	2 cut(s)	110, 174
Cfr13I	GGNCC	2 cut(s)	209, 450
CseI	GACGC	1 cut(s)	332
CviAII	CATG	3 cut(s)	143, 496, 622
DdeI	CTNAG	3 cut(s)	213, 487, 508
DpnI	GATC	2 cut(s)	153, 579
DpnII	GATC	2 cut(s)	151, 577
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco105I	TACGTA	1 cut(s)	588
Eco24I	GRGCYC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	450
Eco57I	CTGAAG	2 cut(s)	600, 618
EcoRII	CCWGG	2 cut(s)	286, 360
EcoT38I	GRGCYC	1 cut(s)	495
FaeI	CATG	3 cut(s)	146, 499, 625
FaiI	YATR	7 cut(s)	11, 144, 347, 497, 585, 591, 623
FatI	CATG	3 cut(s)	142, 495, 621
Fnu4HI	GCNGC	3 cut(s)	233, 278, 368
FokI	GGATG	4 cut(s)	101, 179, 677, 701
FriOI	GRGCYC	1 cut(s)	495
Fsp4HI	GCNGC	3 cut(s)	233, 278, 368
FspBI	CTAG	4 cut(s)	311, 315, 693, 721
GluI	GCNGC	3 cut(s)	233, 278, 368
HaeIII	GGCC	1 cut(s)	210
HapII	CCGG	1 cut(s)	448
HgaI	GACGC	1 cut(s)	332
Hin1II	CATG	3 cut(s)	146, 499, 625
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	2 cut(s)	110, 388
Hpy166II	GTNNAC	3 cut(s)	101, 501, 535
Hpy188III	TCNNGA	6 cut(s)	50, 155, 448, 514, 662, 712
Hpy8I	GTNNAC	3 cut(s)	101, 501, 535
HpyAV	CCTTC	2 cut(s)	235, 624
HpyCH4III	ACNGT	1 cut(s)	469
HpyCH4IV	ACGT	2 cut(s)	118, 587
HpyCH4V	TGCA	5 cut(s)	92, 112, 308, 535, 629
HpyF3I	CTNAG	3 cut(s)	213, 487, 508
HpySE526I	ACGT	2 cut(s)	118, 587
Hsp92II	CATG	3 cut(s)	146, 499, 625
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	151, 577
LmnI	GCTCC	2 cut(s)	229, 364
Lsp1109I	GCAGC	3 cut(s)	244, 289, 379
LweI	GCATC	3 cut(s)	79, 121, 679
MaeI	CTAG	4 cut(s)	311, 315, 693, 721
MaeII	ACGT	2 cut(s)	118, 587
MaeIII	GTNAC	3 cut(s)	16, 188, 695
MalI	GATC	2 cut(s)	153, 579
MboI	GATC	2 cut(s)	151, 577
MboII	GAAGA	4 cut(s)	173, 529, 611, 614
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	495, 537
MluCI	AATT	2 cut(s)	197, 455
MnlI	CCTC	6 cut(s)	139, 157, 258, 428, 517, 579
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	4 cut(s)	63, 138, 297, 341
MslI	CAYNNNNRTG	2 cut(s)	117, 184
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	2 cut(s)	288, 362
MvaI	CCWGG	2 cut(s)	288, 362
NdeII	GATC	2 cut(s)	151, 577
NlaIII	CATG	3 cut(s)	146, 499, 625
NlaIV	GGNNCC	1 cut(s)	559
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	625
PaqCI	CACCTGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	388
PfoI	TCCNGGA	1 cut(s)	360
PkrI	GCNGC	3 cut(s)	234, 279, 369
Ppu21I	YACGTR	1 cut(s)	588
PshAI	GACNNNNGTC	1 cut(s)	524
Psp6I	CCWGG	2 cut(s)	286, 360
PspGI	CCWGG	2 cut(s)	286, 360
PspN4I	GGNNCC	1 cut(s)	559
PspPI	GGNCC	2 cut(s)	209, 450
PsuI	RGATCY	1 cut(s)	577
RseI	CAYNNNNRTG	2 cut(s)	117, 184
SaqAI	TTAA	4 cut(s)	63, 138, 297, 341
SatI	GCNGC	3 cut(s)	233, 278, 368
Sau3AI	GATC	2 cut(s)	151, 577
Sau96I	GGNCC	2 cut(s)	209, 450
ScrFI	CCNGG	2 cut(s)	288, 362
SduI	GDGCHC	2 cut(s)	495, 537
SfaNI	GCATC	3 cut(s)	79, 121, 679
SinI	GGWCC	1 cut(s)	450
SmiMI	CAYNNNNRTG	2 cut(s)	117, 184
SmlI	CTYRAG	3 cut(s)	42, 236, 262
SmoI	CTYRAG	3 cut(s)	42, 236, 262
SnaBI	TACGTA	1 cut(s)	588
Sse9I	AATT	2 cut(s)	197, 455
SsiI	CCGC	2 cut(s)	334, 504
SspMI	CTAG	4 cut(s)	311, 315, 693, 721
StyD4I	CCNGG	2 cut(s)	286, 360
TaaI	ACNGT	1 cut(s)	469
TaiI	ACGT	2 cut(s)	121, 590
TaqI	TCGA	2 cut(s)	386, 571
TasI	AATT	2 cut(s)	197, 455
TfiI	GAWTC	1 cut(s)	388
Tru1I	TTAA	4 cut(s)	63, 138, 297, 341
Tru9I	TTAA	4 cut(s)	63, 138, 297, 341
TscAI	CASTG	2 cut(s)	357, 472
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	232, 277, 367
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	138, 174, 606
TspRI	CASTG	2 cut(s)	357, 472
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	450
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	1 cut(s)	625
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	4 cut(s)	311, 315, 693, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.