Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004993

Physical Location & Seq

Genomic Coordinates Reverse (-)

31370947 .. 31371869

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G330900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAACACCAACAAAAGCATGACCCGGTTCCTCCTCTTCCAACTCTCGCTCATCATCTTCCTCTTCTTTTTCACCCTCCATCCAATCCCAACCCTTGGATCCCCAGCCAACGACTCTGATTTCATCCGTACAAGCTGCGGCACCACGCTCTACCCGCAAGTCTGCTACACCTCTCTCTCCCGCTACGCCAGCGCCATCCAGAACAACCCGGCTCAGCTCGCCAAGGTAGCCATCGGCGTCAGCCTCGCTAAGGCCAGGCGCATGGCCGCTTACGTCTCCGACATCTCTCGCCAAGCCGACTACGGCGCCGACCCGCGATCCGCGGCCGCCCTCCACGACTGCTTCTCCAACTTCGACGAAGCTGTGGACCAGATTCACGATTCGCTCACCCAGATGCGCCAGCTGAGCGGCCCCGCAGGCTCCGGCGGCGGGTCGTTCCTGTTCCAGATGAGCAACGTGCAGACGTGGATGAGCGCCGCGCTGACGGACGAGGAGACCTGCACGGACGGCTTCGAAGACGTGGCGGAAGGGCCCCTGAAGACCGACGTCACCAAGCGAGTGGAGAATGTGAAGAAGGTGACCAGCAATGCCCTTGCGCTCGTGAACAGTTTTGCTCAGAAGGGACCCGGCGCGCCGACTCCCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

216

Amino Acids

23.26

Weight (kDa)

6.28

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14890 AT1G23205 AT2G01610
fragaria_vesca	FvH4_4g33950 FvH4_4g33960
malus_domestica	MD00G1133700.v1.1 MD00G1134000.v1.1 MD16G1021700.v1.1
prunus_persica	Prupe.1G330900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443481 RchiOBHm_Chr4g0443491
rosa_laevigata	RLG00000005924 RLG00000005925
rosa_multiflora	Rmu_sc0001118.1_g000032 Rmu_sc0009670.1_g000005 Rmu_sc0011618.1_g000002 Rmu_sc0011618.1_g000006
rosa_roxburghii	Rroxscaffold_5G00384030
rosa_rugosa	Rorug04G0346600 Rorug04G0346700
rosa_samantha	Rh4AG402100 Rh4AG402200 Rh4BG413600 Rh4BG413800 Rh4CG429200 Rh4CG429300 Rh4DG409200 Rh4DG409300
rosa_wichuraiana	Rw4G034670 Rw4G034680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	506
AccB1I	GGYRCC	2 cut(s)	140, 305
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	408
AccII	CGCG	4 cut(s)	316, 323, 479, 632
AclWI	GGATC	3 cut(s)	93, 106, 312
AcoI	YGGCCR	2 cut(s)	264, 324
AcuI	CTGAAG	1 cut(s)	557
AcyI	GRCGYC	3 cut(s)	237, 306, 546
AfaI	GTAC	1 cut(s)	130
AfiI	CCNNNNNNNGG	3 cut(s)	95, 250, 429
AjiI	CACGTC	2 cut(s)	465, 520
AjnI	CCWGG	1 cut(s)	254
AluBI	AGCT	4 cut(s)	135, 217, 362, 403
AluI	AGCT	4 cut(s)	135, 217, 362, 403
Alw26I	GTCTC	2 cut(s)	280, 488
AlwI	GGATC	3 cut(s)	93, 106, 312
AoxI	GGCC	5 cut(s)	252, 264, 324, 409, 530
ApaI	GGGCCC	1 cut(s)	534
ApeKI	GCWGC	1 cut(s)	135
AscI	GGCGCGCC	1 cut(s)	630
AspLEI	GCGC	9 cut(s)	194, 261, 308, 399, 476, 481, 598, 632, 634
AspS9I	GGNCC	5 cut(s)	367, 410, 530, 531, 623
AsuC2I	CCSGG	3 cut(s)	25, 209, 627
AsuHPI	GGTGA	4 cut(s)	64, 379, 541, 589
AsuII	TTCGAA	1 cut(s)	513
AvaII	GGWCC	2 cut(s)	367, 623
BaeGI	GKGCMC	1 cut(s)	534
BamHI	GGATCC	1 cut(s)	98
BanI	GGYRCC	2 cut(s)	140, 305
BanII	GRGCYC	1 cut(s)	534
BauI	CACGAG	1 cut(s)	599
BbsI	GAAGAC	2 cut(s)	522, 545
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	3 cut(s)	87, 203, 239
BceAI	ACGGC	2 cut(s)	319, 523
BciT130I	CCWGG	1 cut(s)	256
BcnI	CCSGG	3 cut(s)	25, 209, 627
BcoDI	GTCTC	2 cut(s)	280, 488
BfoI	RGCGCY	3 cut(s)	195, 309, 477
BfuAI	ACCTGC	1 cut(s)	506
BglI	GCCNNNNNGGC	1 cut(s)	417
BisI	GCNGC	8 cut(s)	136, 139, 267, 324, 327, 409, 427, 477
BlpI	GCTNAGC	2 cut(s)	213, 404
BlsI	GCNGC	8 cut(s)	137, 140, 268, 325, 328, 410, 428, 478
Bme1390I	CCNGG	4 cut(s)	25, 209, 256, 627
Bme18I	GGWCC	2 cut(s)	367, 623
BmgBI	CACGTC	2 cut(s)	465, 520
BmgT120I	GGNCC	5 cut(s)	367, 410, 530, 531, 623
BmrFI	CCNGG	4 cut(s)	25, 209, 256, 627
BmsI	GCATC	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	545
BpiI	GAAGAC	2 cut(s)	522, 545
Bpu10I	CCTNAGC	1 cut(s)	249
Bpu1102I	GCTNAGC	2 cut(s)	213, 404
Bpu14I	TTCGAA	1 cut(s)	513
BpuMI	CCSGG	3 cut(s)	25, 209, 627
BsaHI	GRCGYC	3 cut(s)	237, 306, 546
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	3 cut(s)	94, 222, 321
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	95, 250, 429
Bse3DI	GCAATG	1 cut(s)	592
BseBI	CCWGG	1 cut(s)	256
BseDI	CCNNGG	3 cut(s)	94, 222, 321
BseGI	GGATG	4 cut(s)	79, 123, 195, 474
BseLI	CCNNNNNNNGG	3 cut(s)	95, 250, 429
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	3 cut(s)	227, 395, 629
BsePI	GCGCGC	1 cut(s)	630
BseRI	GAGGAG	2 cut(s)	23, 506
BseSI	GKGCMC	1 cut(s)	534
BseX3I	CGGCCG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	103
BsgI	GTGCAG	2 cut(s)	479, 484
Bsh1236I	CGCG	4 cut(s)	316, 323, 479, 632
Bsh1285I	CGRYCG	1 cut(s)	327
BshFI	GGCC	5 cut(s)	254, 266, 326, 411, 532
BshNI	GGYRCC	2 cut(s)	140, 305
BsiEI	CGRYCG	1 cut(s)	327
BsiSI	CCGG	4 cut(s)	25, 209, 423, 627
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	3 cut(s)	95, 250, 429
BsmAI	GTCTC	2 cut(s)	280, 488
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	5 cut(s)	254, 266, 326, 411, 532
Bso31I	GGTCTC	1 cut(s)	488
Bsp119I	TTCGAA	1 cut(s)	513
Bsp120I	GGGCCC	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	534
Bsp143I	GATC	2 cut(s)	98, 317
Bsp1720I	GCTNAGC	2 cut(s)	213, 404
BspANI	GGCC	5 cut(s)	254, 266, 326, 411, 532
BspCNI	CTCAG	3 cut(s)	226, 396, 628
BspFNI	CGCG	4 cut(s)	316, 323, 479, 632
BspMI	ACCTGC	1 cut(s)	506
BspPI	GGATC	3 cut(s)	93, 106, 312
BspT104I	TTCGAA	1 cut(s)	513
BspT107I	GGYRCC	2 cut(s)	140, 305
BspTNI	GGTCTC	1 cut(s)	488
BsrBI	CCGCTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	592
BssECI	CCNNGG	3 cut(s)	94, 222, 321
BssHII	GCGCGC	1 cut(s)	630
BssMI	GATC	2 cut(s)	98, 317
BssNI	GRCGYC	3 cut(s)	237, 306, 546
BssSI	CACGAG	1 cut(s)	599
BssT1I	CCWWGG	2 cut(s)	94, 222
Bst2BI	CACGAG	1 cut(s)	599
Bst2UI	CCWGG	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	2 cut(s)	41, 68
BstACI	GRCGYC	3 cut(s)	237, 306, 546
BstBI	TTCGAA	1 cut(s)	513
BstC8I	GCNNGC	5 cut(s)	190, 219, 401, 418, 632
BstDEI	CTNAG	4 cut(s)	213, 249, 404, 615
BstDSI	CCRYGG	1 cut(s)	321
BstEII	GGTNACC	1 cut(s)	577
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	4 cut(s)	79, 123, 195, 474
BstFNI	CGCG	4 cut(s)	316, 323, 479, 632
BstH2I	RGCGCY	3 cut(s)	195, 309, 477
BstHHI	GCGC	9 cut(s)	194, 261, 308, 399, 476, 481, 598, 632, 634
BstKTI	GATC	2 cut(s)	101, 320
BstMAI	GTCTC	2 cut(s)	280, 488
BstMBI	GATC	2 cut(s)	98, 317
BstMCI	CGRYCG	1 cut(s)	327
BstMWI	GCNNNNNNNGC	8 cut(s)	154, 189, 218, 227, 405, 417, 426, 507
BstNI	CCWGG	1 cut(s)	256
BstPAI	GACNNNNGTC	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	577
BstSCI	CCNGG	4 cut(s)	23, 207, 254, 625
BstSLI	GKGCMC	1 cut(s)	534
BstUI	CGCG	4 cut(s)	316, 323, 479, 632
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	2 cut(s)	522, 545
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	2 cut(s)	262, 559
BstYI	RGATCY	1 cut(s)	98
BstZI	CGGCCG	1 cut(s)	324
BsuRI	GGCC	5 cut(s)	254, 266, 326, 411, 532
BtgI	CCRYGG	1 cut(s)	321
BtrI	CACGTC	2 cut(s)	465, 520
BtsCI	GGATG	4 cut(s)	79, 123, 195, 474
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	5 cut(s)	190, 219, 401, 418, 632
CciNI	GCGGCCGC	1 cut(s)	324
CfoI	GCGC	9 cut(s)	194, 261, 308, 399, 476, 481, 598, 632, 634
Cfr13I	GGNCC	5 cut(s)	367, 410, 530, 531, 623
Cfr42I	CCGCGG	1 cut(s)	324
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	2 cut(s)	19, 262
CviQI	GTAC	1 cut(s)	129
DdeI	CTNAG	4 cut(s)	213, 249, 404, 615
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	2 cut(s)	100, 319
DpnII	GATC	2 cut(s)	98, 317
EaeI	YGGCCR	2 cut(s)	264, 324
EagI	CGGCCG	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	41, 68
EarI	CTCTTC	2 cut(s)	41, 68
EciI	GGCGGA	1 cut(s)	539
EclXI	CGGCCG	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	94, 222
Eco24I	GRGCYC	1 cut(s)	534
Eco31I	GGTCTC	1 cut(s)	488
Eco47I	GGWCC	2 cut(s)	367, 623
Eco52I	CGGCCG	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	557
Eco91I	GGTNACC	1 cut(s)	577
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	3 cut(s)	530, 531, 623
EcoO65I	GGTNACC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	254
EcoT14I	CCWWGG	2 cut(s)	94, 222
EcoT38I	GRGCYC	1 cut(s)	534
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
ErhI	CCWWGG	2 cut(s)	94, 222
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	22, 265
FaiI	YATR	2 cut(s)	20, 263
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	2 cut(s)	18, 261
FauI	CCCGC	5 cut(s)	162, 188, 321, 421, 422
Fnu4HI	GCNGC	8 cut(s)	136, 139, 267, 324, 327, 409, 427, 477
FokI	GGATG	4 cut(s)	66, 110, 182, 481
FriOI	GRGCYC	1 cut(s)	534
Fsp4HI	GCNGC	8 cut(s)	136, 139, 267, 324, 327, 409, 427, 477
GlaI	GCGC	9 cut(s)	193, 260, 307, 398, 475, 480, 597, 631, 633
GluI	GCNGC	8 cut(s)	136, 139, 267, 324, 327, 409, 427, 477
GsaI	CCCAGC	1 cut(s)	107
HaeII	RGCGCY	3 cut(s)	195, 309, 477
HaeIII	GGCC	5 cut(s)	254, 266, 326, 411, 532
HapII	CCGG	4 cut(s)	25, 209, 423, 627
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	9 cut(s)	194, 261, 308, 399, 476, 481, 598, 632, 634
Hin1I	GRCGYC	3 cut(s)	237, 306, 546
Hin1II	CATG	2 cut(s)	22, 265
Hin6I	GCGC	9 cut(s)	192, 259, 306, 397, 474, 479, 596, 630, 632
HinP1I	GCGC	9 cut(s)	192, 259, 306, 397, 474, 479, 596, 630, 632
HinfI	GANTC	4 cut(s)	113, 373, 380, 637
HpaII	CCGG	4 cut(s)	25, 209, 423, 627
HphI	GGTGA	4 cut(s)	64, 379, 541, 589
Hpy166II	GTNNAC	2 cut(s)	367, 604
Hpy188I	TCNGA	3 cut(s)	118, 280, 618
Hpy188III	TCNNGA	4 cut(s)	199, 377, 445, 601
Hpy8I	GTNNAC	2 cut(s)	367, 604
Hpy99I	CGWCG	2 cut(s)	359, 548
HpyAV	CCTTC	3 cut(s)	521, 568, 613
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	5 cut(s)	273, 456, 464, 519, 546
HpyCH4V	TGCA	2 cut(s)	460, 501
HpyF10VI	GCNNNNNNNGC	8 cut(s)	154, 189, 218, 227, 405, 417, 426, 507
HpyF3I	CTNAG	4 cut(s)	213, 249, 404, 615
HpySE526I	ACGT	5 cut(s)	273, 456, 464, 519, 546
Hsp92I	GRCGYC	3 cut(s)	237, 306, 546
Hsp92II	CATG	2 cut(s)	22, 265
HspAI	GCGC	9 cut(s)	192, 259, 306, 397, 474, 479, 596, 630, 632
KasI	GGCGCC	1 cut(s)	305
KflI	GGGWCCC	1 cut(s)	623
KspI	CCGCGG	1 cut(s)	324
Kzo9I	GATC	2 cut(s)	98, 317
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	1 cut(s)	384
MaeII	ACGT	5 cut(s)	273, 456, 464, 519, 546
MaeIII	GTNAC	2 cut(s)	547, 577
MalI	GATC	2 cut(s)	100, 319
MbiI	CCGCTC	1 cut(s)	408
MboI	GATC	2 cut(s)	98, 317
MboII	GAAGA	6 cut(s)	28, 49, 55, 527, 550, 583
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	534
Mly113I	GGCGCC	1 cut(s)	306
MlyI	GAGTC	2 cut(s)	107, 631
MmeI	TCCRAC	3 cut(s)	64, 303, 372
MnlI	CCTC	8 cut(s)	41, 44, 71, 86, 181, 254, 341, 484
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	2 cut(s)	323, 403
MspI	CCGG	4 cut(s)	25, 209, 423, 627
MspR9I	CCNGG	4 cut(s)	25, 209, 256, 627
MteI	GCGCNGCGC	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	256
MvnI	CGCG	4 cut(s)	316, 323, 479, 632
MwoI	GCNNNNNNNGC	8 cut(s)	154, 189, 218, 227, 405, 417, 426, 507
NarI	GGCGCC	1 cut(s)	306
NciI	CCSGG	3 cut(s)	25, 209, 627
NdeII	GATC	2 cut(s)	98, 317
NlaIII	CATG	2 cut(s)	22, 265
NmuCI	GTSAC	2 cut(s)	547, 577
NotI	GCGGCCGC	1 cut(s)	324
NspV	TTCGAA	1 cut(s)	513
PalAI	GGCGCGCC	1 cut(s)	630
PauI	GCGCGC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	373, 380
PflMI	CCANNNNNTGG	1 cut(s)	95
PkrI	GCNGC	8 cut(s)	137, 140, 268, 325, 328, 410, 428, 478
PleI	GAGTC	2 cut(s)	107, 631
PluTI	GGCGCC	1 cut(s)	309
PpsI	GAGTC	2 cut(s)	107, 631
PpuMI	RGGWCCY	1 cut(s)	623
PshAI	GACNNNNGTC	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	254
PspOMI	GGGCCC	1 cut(s)	530
PspPI	GGNCC	5 cut(s)	367, 410, 530, 531, 623
PspPPI	RGGWCCY	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	98
PteI	GCGCGC	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	403
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
RseI	CAYNNNNRTG	1 cut(s)	392
SacII	CCGCGG	1 cut(s)	324
SatI	GCNGC	8 cut(s)	136, 139, 267, 324, 327, 409, 427, 477
Sau3AI	GATC	2 cut(s)	98, 317
Sau96I	GGNCC	5 cut(s)	367, 410, 530, 531, 623
SchI	GAGTC	2 cut(s)	107, 631
ScrFI	CCNGG	4 cut(s)	25, 209, 256, 627
SduI	GDGCHC	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	384
SfoI	GGCGCC	1 cut(s)	307
Sfr303I	CCGCGG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	513
SgrBI	CCGCGG	1 cut(s)	324
SgsI	GGCGCGCC	1 cut(s)	630
SinI	GGWCC	2 cut(s)	367, 623
SmiMI	CAYNNNNRTG	1 cut(s)	392
SspDI	GGCGCC	1 cut(s)	305
StyD4I	CCNGG	4 cut(s)	23, 207, 254, 625
StyI	CCWWGG	2 cut(s)	94, 222
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	5 cut(s)	276, 459, 467, 522, 549
TaqI	TCGA	2 cut(s)	354, 513
TaqII	GACCGA	1 cut(s)	557
TauI	GCSGC	7 cut(s)	141, 269, 326, 329, 411, 429, 479
TfiI	GAWTC	2 cut(s)	373, 380
TseFI	GTSAC	2 cut(s)	547, 577
TseI	GCWGC	1 cut(s)	135
Tsp45I	GTSAC	2 cut(s)	547, 577
TspDTI	ATGAA	2 cut(s)	17, 112
TspGWI	ACGGA	3 cut(s)	116, 500, 518
Van91I	CCANNNNNTGG	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	367, 623
XagI	CCTNNNNNAGG	1 cut(s)	248
ZraI	GACGTC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.