Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001118.1

Orthogroup ID

OG0004993

Physical Location & Seq

Genomic Coordinates Reverse (-)

192534 .. 193133

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001118.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ctccctctcacctcactctcactcctcatcttcctcttcctcctccgctcacccccagccgtcggattcccctctcccgctccctccaccaacgactcagatttcatccgcaccagttgcggcaccaccctctaccccgagctctgctactcctccctctcccgctacgccaacgccgtccagagcaacccttctcagctcgccaaggtcgccatcggcgtcagcctctccaaagccaagcgcatggccgccttcgtctccaacctctcccgccacgccgactacggatccgaccaccgcgccaccgccgccctccacgactgcttcagcaactttgatgacgccgtcgatcagattcgcgactcgctccggcagatgaagagcctcggttcgggtcctgggtcggtccggtttcagatgagcaacgtccagacgtggatgagcgccgctctgacggaccaggatacgtgtacggacgggtttcaggacgtgccggacgggtcggtcaagtccgacgtggtgaacaaggttgagaaagtgaagaaggtcacgagtaatgccctcgcgctcgtcaacagagtggcggagaaagcgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

199

Amino Acids

21.37

Weight (kDa)

8.39

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14890 AT1G23205 AT2G01610
fragaria_vesca	FvH4_4g33950 FvH4_4g33960
malus_domestica	MD00G1133700.v1.1 MD00G1134000.v1.1 MD16G1021700.v1.1
prunus_persica	Prupe.1G330900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443481 RchiOBHm_Chr4g0443491
rosa_laevigata	RLG00000005924 RLG00000005925
rosa_multiflora	Rmu_sc0001118.1_g000032 Rmu_sc0009670.1_g000005 Rmu_sc0011618.1_g000002 Rmu_sc0011618.1_g000006
rosa_roxburghii	Rroxscaffold_5G00384030
rosa_rugosa	Rorug04G0346600 Rorug04G0346700
rosa_samantha	Rh4AG402100 Rh4AG402200 Rh4BG413600 Rh4BG413800 Rh4CG429200 Rh4CG429300 Rh4DG409200 Rh4DG409300
rosa_wichuraiana	Rw4G034670 Rw4G034680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	503
AccB1I	GGYRCC	1 cut(s)	122
AccBSI	CCGCTC	3 cut(s)	48, 80, 449
AccII	CGCG	3 cut(s)	300, 360, 566
AclWI	GGATC	2 cut(s)	282, 295
AcoI	YGGCCR	1 cut(s)	246
AcuI	CTGAAG	1 cut(s)	310
AcyI	GRCGYC	2 cut(s)	219, 342
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	62, 391
AflIII	ACRYGT	1 cut(s)	467
AjiI	CACGTC	3 cut(s)	435, 490, 517
AjnI	CCWGG	2 cut(s)	397, 459
AluBI	AGCT	2 cut(s)	142, 199
AluI	AGCT	2 cut(s)	142, 199
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	2 cut(s)	282, 295
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	246
AspLEI	GCGC	4 cut(s)	243, 302, 446, 568
AspS9I	GGNCC	3 cut(s)	395, 406, 457
AsuHPI	GGTGA	2 cut(s)	42, 532
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	3 cut(s)	395, 406, 457
BamHI	GGATCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	3 cut(s)	44, 161, 329
BciT130I	CCWGG	2 cut(s)	399, 461
BciVI	GTATCC	1 cut(s)	457
BcoDI	GTCTC	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	4 cut(s)	121, 249, 309, 447
BlsI	GCNGC	4 cut(s)	122, 250, 310, 448
Bme1390I	CCNGG	2 cut(s)	399, 461
Bme18I	GGWCC	3 cut(s)	395, 406, 457
BmeT110I	CYCGRG	1 cut(s)	137
BmgBI	CACGTC	3 cut(s)	435, 490, 517
BmgT120I	GGNCC	3 cut(s)	395, 406, 457
BmiI	GGNNCC	3 cut(s)	124, 289, 396
BmrFI	CCNGG	2 cut(s)	399, 461
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BsaAI	YACGTR	1 cut(s)	468
BsaHI	GRCGYC	2 cut(s)	219, 342
BsaJI	CCNNGG	3 cut(s)	204, 385, 398
BsaWI	WCCGGW	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 391
Bse1I	ACTGG	1 cut(s)	114
BseBI	CCWGG	2 cut(s)	399, 461
BseDI	CCNNGG	3 cut(s)	204, 385, 398
BseGI	GGATG	2 cut(s)	105, 444
BseLI	CCNNNNNNNGG	2 cut(s)	62, 391
BseMII	CTCAG	2 cut(s)	111, 209
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	3 cut(s)	14, 32, 142
BseYI	CCCAGC	1 cut(s)	55
Bsh1236I	CGCG	3 cut(s)	300, 360, 566
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	3 cut(s)	370, 409, 494
BslI	CCNNNNNNNGG	2 cut(s)	62, 391
BsmAI	GTCTC	1 cut(s)	262
BsmBI	CGTCTC	1 cut(s)	262
BsnI	GGCC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	287, 349
Bsp68I	TCGCGA	1 cut(s)	360
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	110, 208
BspFNI	CGCG	3 cut(s)	300, 360, 566
BspLI	GGNNCC	3 cut(s)	124, 289, 396
BspPI	GGATC	2 cut(s)	282, 295
BspQI	GCTCTTC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	122
BsrBI	CCGCTC	3 cut(s)	48, 80, 449
BsrI	ACTGG	1 cut(s)	114
BssECI	CCNNGG	3 cut(s)	204, 385, 398
BssMI	GATC	2 cut(s)	287, 349
BssNI	GRCGYC	2 cut(s)	219, 342
BssSI	CACGAG	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	550
Bst2UI	CCWGG	2 cut(s)	399, 461
Bst6I	CTCTTC	2 cut(s)	41, 374
BstACI	GRCGYC	2 cut(s)	219, 342
BstAPI	GCANNNNNTGC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	468
BstC8I	GCNNGC	2 cut(s)	201, 595
BstDEI	CTNAG	2 cut(s)	97, 195
BstF5I	GGATG	2 cut(s)	105, 444
BstFNI	CGCG	3 cut(s)	300, 360, 566
BstH2I	RGCGCY	1 cut(s)	447
BstHHI	GCGC	4 cut(s)	243, 302, 446, 568
BstKTI	GATC	2 cut(s)	290, 352
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	2 cut(s)	287, 349
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 209, 308, 590
BstNI	CCWGG	2 cut(s)	399, 461
BstSCI	CCNGG	2 cut(s)	397, 459
BstUI	CGCG	3 cut(s)	300, 360, 566
BstX2I	RGATCY	1 cut(s)	287
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	1 cut(s)	248
BtrI	CACGTC	3 cut(s)	435, 490, 517
BtsCI	GGATG	2 cut(s)	105, 444
BtuMI	TCGCGA	1 cut(s)	360
Cac8I	GCNNGC	2 cut(s)	201, 595
CfoI	GCGC	4 cut(s)	243, 302, 446, 568
Cfr13I	GGNCC	3 cut(s)	395, 406, 457
CpoI	CGGWCCG	1 cut(s)	406
CseI	GACGC	2 cut(s)	208, 350
Csp6I	GTAC	1 cut(s)	471
CspI	CGGWCCG	1 cut(s)	406
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	8 cut(s)	59, 142, 199, 225, 236, 248, 384, 597
CviKI_1	RGCY	8 cut(s)	59, 142, 199, 225, 236, 248, 384, 597
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	97, 195
DpnI	GATC	2 cut(s)	289, 351
DpnII	GATC	2 cut(s)	287, 349
DrdI	GACNNNNNNGTC	1 cut(s)	503
DseDI	GACNNNNNNGTC	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	41, 374
EarI	CTCTTC	2 cut(s)	41, 374
EciI	GGCGGA	1 cut(s)	599
Ecl136II	GAGCTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	395, 406, 457
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	137
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	397, 459
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	262
FaeI	CATG	1 cut(s)	247
FaiI	YATR	1 cut(s)	245
FatI	CATG	1 cut(s)	243
FauI	CCCGC	4 cut(s)	85, 170, 278, 586
Fnu4HI	GCNGC	4 cut(s)	121, 249, 309, 447
FokI	GGATG	2 cut(s)	92, 451
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	4 cut(s)	121, 249, 309, 447
GlaI	GCGC	4 cut(s)	242, 301, 445, 567
GluI	GCNGC	4 cut(s)	121, 249, 309, 447
GsaI	CCCAGC	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	447
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	3 cut(s)	370, 409, 494
HgaI	GACGC	2 cut(s)	208, 350
HhaI	GCGC	4 cut(s)	243, 302, 446, 568
Hin1I	GRCGYC	2 cut(s)	219, 342
Hin1II	CATG	1 cut(s)	247
Hin6I	GCGC	4 cut(s)	241, 300, 444, 566
HinP1I	GCGC	4 cut(s)	241, 300, 444, 566
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	4 cut(s)	66, 95, 355, 362
HpaII	CCGG	3 cut(s)	370, 409, 494
HphI	GGTGA	2 cut(s)	42, 532
Hpy166II	GTNNAC	3 cut(s)	471, 523, 574
Hpy188I	TCNGA	7 cut(s)	65, 100, 292, 354, 417, 453, 514
Hpy188III	TCNNGA	5 cut(s)	181, 359, 430, 485, 550
Hpy8I	GTNNAC	3 cut(s)	471, 523, 574
Hpy99I	CGWCG	3 cut(s)	65, 350, 518
HpyAV	CCTTC	3 cut(s)	201, 262, 538
HpyCH4IV	ACGT	5 cut(s)	426, 434, 467, 489, 516
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 209, 308, 590
HpyF3I	CTNAG	2 cut(s)	97, 195
HpySE526I	ACGT	5 cut(s)	426, 434, 467, 489, 516
Hsp92I	GRCGYC	2 cut(s)	219, 342
Hsp92II	CATG	1 cut(s)	247
HspAI	GCGC	4 cut(s)	241, 300, 444, 566
Kzo9I	GATC	2 cut(s)	287, 349
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	2 cut(s)	85, 372
MaeII	ACGT	5 cut(s)	426, 434, 467, 489, 516
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	2 cut(s)	289, 351
MbiI	CCGCTC	3 cut(s)	48, 80, 449
MboI	GATC	2 cut(s)	287, 349
MboII	GAAGA	4 cut(s)	22, 28, 391, 553
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	89, 356
MmeI	TCCRAC	4 cut(s)	43, 285, 315, 537
MspI	CCGG	3 cut(s)	370, 409, 494
MspR9I	CCNGG	2 cut(s)	399, 461
MvaI	CCWGG	2 cut(s)	399, 461
MvnI	CGCG	3 cut(s)	300, 360, 566
MwoI	GCNNNNNNNGC	4 cut(s)	117, 209, 308, 590
NdeII	GATC	2 cut(s)	287, 349
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	3 cut(s)	124, 289, 396
NmuCI	GTSAC	1 cut(s)	547
NruI	TCGCGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	374
PcsI	WCGNNNNNNNCGW	2 cut(s)	174, 216
PfeI	GAWTC	2 cut(s)	66, 355
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	122, 250, 310, 448
PleI	GAGTC	2 cut(s)	89, 356
PpsI	GAGTC	2 cut(s)	89, 356
Ppu21I	YACGTR	1 cut(s)	468
PpuMI	RGGWCCY	1 cut(s)	395
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	397, 459
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	397, 459
PspN4I	GGNNCC	3 cut(s)	124, 289, 396
PspPI	GGNCC	3 cut(s)	395, 406, 457
PspPPI	RGGWCCY	1 cut(s)	395
PsuI	RGATCY	1 cut(s)	287
PsyI	GACNNNGTC	1 cut(s)	344
RruI	TCGCGA	1 cut(s)	360
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
Rsr2I	CGGWCCG	1 cut(s)	406
RsrII	CGGWCCG	1 cut(s)	406
SacI	GAGCTC	1 cut(s)	144
SapI	GCTCTTC	1 cut(s)	374
SatI	GCNGC	4 cut(s)	121, 249, 309, 447
Sau3AI	GATC	2 cut(s)	287, 349
Sau96I	GGNCC	3 cut(s)	395, 406, 457
SchI	GAGTC	2 cut(s)	89, 356
ScrFI	CCNGG	2 cut(s)	399, 461
SduI	GDGCHC	1 cut(s)	144
SinI	GGWCC	3 cut(s)	395, 406, 457
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	397, 459
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	5 cut(s)	429, 437, 470, 492, 519
TaqI	TCGA	1 cut(s)	348
TaqII	GACCGA	2 cut(s)	394, 493
TauI	GCSGC	4 cut(s)	123, 251, 311, 449
TfiI	GAWTC	2 cut(s)	66, 355
TseFI	GTSAC	1 cut(s)	547
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	94, 392
TspGWI	ACGGA	3 cut(s)	300, 470, 488
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	395, 406, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.