Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004993

Physical Location & Seq

Genomic Coordinates Forward (+)

51880706 .. 51884664

Gene Structure 3959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0346700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGCAGCACGACGAGGTCATATGGCAGGTCATCAGGCACAAGCACTGCAGCTTCATGTCCAAAATCGAAACCGGGATTTTCTGTAGAAACCCTTATAACGTCACCGGGATTTGTAATCGGAGCTCTTGCCCTCTGGCCAATAGTCGCTACGCTACCATTCGCGACCACGATGGAGTCTTCTATCTTTATATGAAAACTATAGAAAGAGCTCATATGCCAAACAAATTGTGGGAAAGAGTTAAGTTGCCCAGGAATTATGAGAAAGCACTTGAAATCATCGACAAACATCTGATGTATTGGCCTAAGTTTCTTGTACATAAAACAAAGCAACGGCTCACTAAAATGACTCAGATGCGGATACGCATGAGGAAGCTTGCTTTGAAAACAAGGGAGAAAATAATGACAACACCAAGGAAGGAAATAAAGAGAGAAGCTAGAAGAGAGGAGAAGGCTGAAAAAGCTGCAGTTTTGGATAAGAGCATTGAGAAAGAACTATTAGAACGCCTTAAGAATGGAGTTTATGGTGATCTACATAAAGATATATATAATTACCCTTTTGATAAATACCAAAAAGTCCTTGAAGGGGAAGAACAGAATACTGAAAGAGAAGAAGAAGAAGAAGAAGAATACGAGCAGGATGGTGAGATAGAATATGTTGAAGGTTATGACGAGCTTGAAGAGGAGGATGATATTGAAGATCTGGGTGGTCATGCAATGGACTATTCTCATGCAGATGATGATAGTGTTGGAATGGATGTAGAGTCAGAAGCAGGTACTGGCAAGAGAGGGAGAAAGTCTCGAAAGTTTGAGAAAGATGGAGCTGTTGCCAAATCGAAGAAACCTAGGGTACTTGTTGAGGTGGAGTATGAAGATGGTTGTGATAGACAAAAGGCAGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

300

Amino Acids

35.56

Weight (kDa)

6.07

Isoelectric Point (pI)

51.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L28e	PF01778	6 - 118	2.2e-39	Ribosomal L28e protein family
Mak16	PF04874	138 - 233	1.4e-22	Mak16 protein C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14890 AT1G23205 AT2G01610
fragaria_vesca	FvH4_4g33950 FvH4_4g33960
malus_domestica	MD00G1133700.v1.1 MD00G1134000.v1.1 MD16G1021700.v1.1
prunus_persica	Prupe.1G330900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443481 RchiOBHm_Chr4g0443491
rosa_laevigata	RLG00000005924 RLG00000005925
rosa_multiflora	Rmu_sc0001118.1_g000032 Rmu_sc0009670.1_g000005 Rmu_sc0011618.1_g000002 Rmu_sc0011618.1_g000006
rosa_roxburghii	Rroxscaffold_5G00384030
rosa_rugosa	Rorug04G0346600 Rorug04G0346700
rosa_samantha	Rh4AG402100 Rh4AG402200 Rh4BG413600 Rh4BG413800 Rh4CG429200 Rh4CG429300 Rh4DG409200 Rh4DG409300
rosa_wichuraiana	Rw4G034670 Rw4G034680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	96
Acc36I	ACCTGC	2 cut(s)	16, 761
AccII	CGCG	1 cut(s)	162
AciI	CCGC	1 cut(s)	355
AcoI	YGGCCR	1 cut(s)	135
AfaI	GTAC	3 cut(s)	315, 775, 849
AfiI	CCNNNNNNNGG	1 cut(s)	583
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	6 cut(s)	272, 382, 581, 659, 677, 695
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	8 cut(s)	51, 123, 209, 373, 434, 461, 673, 821
AluI	AGCT	8 cut(s)	51, 123, 209, 373, 434, 461, 673, 821
Alw21I	GWGCWC	2 cut(s)	125, 211
Alw26I	GTCTC	1 cut(s)	801
AlwNI	CAGNNNCTG	1 cut(s)	776
AoxI	GGCC	2 cut(s)	135, 299
ApeKI	GCWGC	3 cut(s)	4, 48, 461
AspA2I	CCTAGG	1 cut(s)	842
AsuC2I	CCSGG	2 cut(s)	73, 106
AsuHPI	GGTGA	3 cut(s)	94, 536, 653
AvrII	CCTAGG	1 cut(s)	842
BalI	TGGCCA	1 cut(s)	137
BanII	GRGCYC	2 cut(s)	125, 211
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	125, 211
BbvI	GCAGC	3 cut(s)	16, 60, 448
BccI	CCATC	4 cut(s)	164, 632, 809, 866
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	250
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	2 cut(s)	73, 106
BcoDI	GTCTC	1 cut(s)	801
BfaI	CTAG	2 cut(s)	435, 843
BfmI	CTRYAG	4 cut(s)	46, 82, 198, 462
BfrI	CTTAAG	1 cut(s)	506
BfuAI	ACCTGC	2 cut(s)	16, 761
BfuI	GTATCC	1 cut(s)	351
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	3 cut(s)	5, 49, 462
BlnI	CCTAGG	1 cut(s)	842
BlsI	GCNGC	3 cut(s)	6, 50, 463
Bme1390I	CCNGG	3 cut(s)	73, 106, 250
BmrFI	CCNGG	3 cut(s)	73, 106, 250
BmsI	GCATC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	169
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
BpuMI	CCSGG	2 cut(s)	73, 106
BsaJI	CCNNGG	3 cut(s)	248, 410, 842
Bsc4I	CCNNNNNNNGG	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	781
Bse3DI	GCAATG	1 cut(s)	720
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	248, 410, 842
BseGI	GGATG	3 cut(s)	643, 691, 760
BseLI	CCNNNNNNNGG	1 cut(s)	583
BseMI	GCAATG	1 cut(s)	720
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	781
BseRI	GAGGAG	2 cut(s)	458, 695
BseXI	GCAGC	3 cut(s)	16, 60, 448
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	137, 301
BsiHKAI	GWGCWC	2 cut(s)	125, 211
BsiSI	CCGG	2 cut(s)	72, 105
BslI	CCNNNNNNNGG	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	801
BsnI	GGCC	2 cut(s)	137, 301
Bsp1286I	GDGCHC	2 cut(s)	125, 211
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	526, 697
Bsp68I	TCGCGA	1 cut(s)	162
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	137, 301
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	162
BspMAI	CTGCAG	2 cut(s)	50, 466
BspMI	ACCTGC	2 cut(s)	16, 761
BspTI	CTTAAG	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	720
BsrGI	TGTACA	1 cut(s)	313
BsrI	ACTGG	1 cut(s)	781
BssECI	CCNNGG	3 cut(s)	248, 410, 842
BssMI	GATC	2 cut(s)	526, 697
BssT1I	CCWWGG	2 cut(s)	410, 842
Bst2UI	CCWGG	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	433, 672
BstAFI	CTTAAG	1 cut(s)	506
BstAUI	TGTACA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	303, 348
BstF5I	GGATG	3 cut(s)	643, 691, 760
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	529, 700
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	2 cut(s)	526, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	458
BstNI	CCWGG	1 cut(s)	250
BstSCI	CCNGG	3 cut(s)	71, 104, 248
BstSFI	CTRYAG	4 cut(s)	46, 82, 198, 462
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	16, 60, 448
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	2 cut(s)	137, 301
BtsCI	GGATG	3 cut(s)	643, 691, 760
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
BtuMI	TCGCGA	1 cut(s)	162
BveI	ACCTGC	2 cut(s)	16, 761
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	776
Csp6I	GTAC	3 cut(s)	314, 774, 848
CviAII	CATG	4 cut(s)	55, 364, 710, 728
CviQI	GTAC	3 cut(s)	314, 774, 848
DdeI	CTNAG	2 cut(s)	303, 348
DpnI	GATC	2 cut(s)	528, 699
DpnII	GATC	2 cut(s)	526, 697
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	433, 672
EarI	CTCTTC	2 cut(s)	433, 672
Ecl136II	GAGCTC	2 cut(s)	123, 209
Eco130I	CCWWGG	2 cut(s)	410, 842
Eco24I	GRGCYC	2 cut(s)	125, 211
Eco53kI	GAGCTC	2 cut(s)	123, 209
EcoICRI	GAGCTC	2 cut(s)	123, 209
EcoRII	CCWGG	1 cut(s)	248
EcoT14I	CCWWGG	2 cut(s)	410, 842
EcoT38I	GRGCYC	2 cut(s)	125, 211
ErhI	CCWWGG	2 cut(s)	410, 842
FaeI	CATG	4 cut(s)	58, 367, 713, 731
FatI	CATG	4 cut(s)	54, 363, 709, 727
FauNDI	CATATG	2 cut(s)	20, 213
Fnu4HI	GCNGC	3 cut(s)	5, 49, 462
FokI	GGATG	3 cut(s)	650, 698, 767
FriOI	GRGCYC	2 cut(s)	125, 211
Fsp4HI	GCNGC	3 cut(s)	5, 49, 462
FspBI	CTAG	2 cut(s)	435, 843
GluI	GCNGC	3 cut(s)	5, 49, 462
HaeIII	GGCC	2 cut(s)	137, 301
HapII	CCGG	2 cut(s)	72, 105
Hin1II	CATG	4 cut(s)	58, 367, 713, 731
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	3 cut(s)	174, 346, 761
HpaII	CCGG	2 cut(s)	72, 105
HphI	GGTGA	3 cut(s)	94, 536, 653
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188I	TCNGA	4 cut(s)	120, 291, 351, 766
Hpy188III	TCNNGA	2 cut(s)	161, 798
Hpy8I	GTNNAC	1 cut(s)	898
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	4 cut(s)	409, 442, 575, 653
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	4, 48, 464, 713, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	458
HpyF3I	CTNAG	2 cut(s)	303, 348
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	58, 367, 713, 731
Kzo9I	GATC	2 cut(s)	526, 697
LmnI	GCTCC	2 cut(s)	120, 818
Lsp1109I	GCAGC	3 cut(s)	16, 60, 448
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	2 cut(s)	435, 843
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	2 cut(s)	528, 699
MboI	GATC	2 cut(s)	526, 697
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	2 cut(s)	125, 211
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	3 cut(s)	224, 253, 547
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	3 cut(s)	183, 340, 770
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	8 cut(s)	7, 141, 360, 436, 673, 676, 779, 850
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	2 cut(s)	240, 507
MslI	CAYNNNNRTG	2 cut(s)	341, 732
Msp20I	TGGCCA	1 cut(s)	137
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	72, 105
MspR9I	CCNGG	3 cut(s)	73, 106, 250
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	1 cut(s)	458
NciI	CCSGG	2 cut(s)	73, 106
NdeI	CATATG	2 cut(s)	20, 213
NdeII	GATC	2 cut(s)	526, 697
NlaIII	CATG	4 cut(s)	58, 367, 713, 731
NmuCI	GTSAC	1 cut(s)	100
NruI	TCGCGA	1 cut(s)	162
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	3 cut(s)	6, 50, 463
PleI	GAGTC	3 cut(s)	182, 340, 769
PpsI	GAGTC	3 cut(s)	182, 340, 769
PsiI	TTATAA	1 cut(s)	96
Psp124BI	GAGCTC	2 cut(s)	125, 211
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PstI	CTGCAG	2 cut(s)	50, 466
PstNI	CAGNNNCTG	1 cut(s)	776
PsuI	RGATCY	1 cut(s)	697
PsyI	GACNNNGTC	1 cut(s)	14
RruI	TCGCGA	1 cut(s)	162
RsaI	GTAC	3 cut(s)	315, 775, 849
RsaNI	GTAC	3 cut(s)	314, 774, 848
RseI	CAYNNNNRTG	2 cut(s)	341, 732
SacI	GAGCTC	2 cut(s)	125, 211
SaqAI	TTAA	2 cut(s)	240, 507
SatI	GCNGC	3 cut(s)	5, 49, 462
Sau3AI	GATC	2 cut(s)	526, 697
SchI	GAGTC	3 cut(s)	183, 340, 770
ScrFI	CCNGG	3 cut(s)	73, 106, 250
SduI	GDGCHC	2 cut(s)	125, 211
SfaNI	GCATC	1 cut(s)	342
SfcI	CTRYAG	4 cut(s)	46, 82, 198, 462
SmiMI	CAYNNNNRTG	2 cut(s)	341, 732
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	3 cut(s)	224, 253, 547
SsiI	CCGC	1 cut(s)	355
SspMI	CTAG	2 cut(s)	435, 843
SstI	GAGCTC	2 cut(s)	125, 211
StyD4I	CCNGG	3 cut(s)	71, 104, 248
StyI	CCWWGG	2 cut(s)	410, 842
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	4 cut(s)	66, 279, 799, 833
TasI	AATT	3 cut(s)	224, 253, 547
TatI	WGTACW	1 cut(s)	313
Tru1I	TTAA	2 cut(s)	240, 507
Tru9I	TTAA	2 cut(s)	240, 507
TscAI	CASTG	1 cut(s)	50
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	4, 48, 461
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	3 cut(s)	43, 206, 882
TspRI	CASTG	1 cut(s)	50
Tth111I	GACNNNGTC	1 cut(s)	14
Vha464I	CTTAAG	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XmaJI	CCTAGG	1 cut(s)	842
XspI	CTAG	2 cut(s)	435, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.