Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011618.1

Orthogroup ID

OG0004993

Physical Location & Seq

Genomic Coordinates Forward (+)

6130 .. 6741

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011618.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atggaaaaccctcaatccgtcctcctactccttcctctcattttcctcttcttcctccgtccaaccttagccgtcgaatccccctcctcctctcccacccccaccaacaaccctgcagatttcatccgcacaagctgcgccaccaccctataccccgagctctgcgactcctccctctcacccttcacctacaccgtccagtcaaaccctactcggcttgcgatggcagccatcgctgtgagcctagccaatgccagacgcacggcgacttccctcgcaagcgtctccaaacaagccgaccctaaagtctccggggccctccaggactgctccagcaacttcggaaaagccatcgacgagattacagattcacaagagcagatgaagacgttggggtcgggttccgggtcggttaggtttcagctgagcaacgtgcagacttggatgagtgcggcgcttacggacgcggagacgtgtacggatggatttgaggacgtggaggacgggccgatcaagacggaggtggtgaaccaggctgagatggtgaagaagatgacaagtaatgcgcttgcgatcgttaatggtcttgctagtaacggcgcaccgccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

203

Amino Acids

21.47

Weight (kDa)

4.54

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14890 AT1G23205 AT2G01610
fragaria_vesca	FvH4_4g33950 FvH4_4g33960
malus_domestica	MD00G1133700.v1.1 MD00G1134000.v1.1 MD16G1021700.v1.1
prunus_persica	Prupe.1G330900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443481 RchiOBHm_Chr4g0443491
rosa_laevigata	RLG00000005924 RLG00000005925
rosa_multiflora	Rmu_sc0001118.1_g000032 Rmu_sc0009670.1_g000005 Rmu_sc0011618.1_g000002 Rmu_sc0011618.1_g000006
rosa_roxburghii	Rroxscaffold_5G00384030
rosa_rugosa	Rorug04G0346600 Rorug04G0346700
rosa_samantha	Rh4AG402100 Rh4AG402200 Rh4BG413600 Rh4BG413800 Rh4CG429200 Rh4CG429300 Rh4DG409200 Rh4DG409300
rosa_wichuraiana	Rw4G034670 Rw4G034680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	305, 394
AccII	CGCG	1 cut(s)	467
AciI	CCGC	4 cut(s)	127, 452, 467, 605
AfaI	GTAC	1 cut(s)	478
AflIII	ACRYGT	1 cut(s)	473
AjiI	CACGTC	2 cut(s)	474, 496
AjnI	CCWGG	2 cut(s)	321, 531
AluBI	AGCT	3 cut(s)	135, 160, 424
AluI	AGCT	3 cut(s)	135, 160, 424
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	3 cut(s)	289, 313, 464
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	2 cut(s)	315, 506
ApaI	GGGCCC	1 cut(s)	319
ApeKI	GCWGC	2 cut(s)	135, 227
AspLEI	GCGC	4 cut(s)	140, 457, 568, 602
AspS9I	GGNCC	3 cut(s)	315, 316, 506
AsuC2I	CCSGG	2 cut(s)	313, 406
AsuHPI	GGTGA	4 cut(s)	171, 178, 538, 556
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	162, 319
BbsI	GAAGAC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	2 cut(s)	122, 239
BccI	CCATC	5 cut(s)	217, 239, 359, 476, 535
BceAI	ACGGC	2 cut(s)	56, 279
BciT130I	CCWGG	2 cut(s)	323, 533
BcnI	CCSGG	2 cut(s)	313, 406
BcoDI	GTCTC	3 cut(s)	289, 313, 464
BfaI	CTAG	2 cut(s)	245, 591
BfmI	CTRYAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	458
BisI	GCNGC	3 cut(s)	136, 228, 453
BlpI	GCTNAGC	1 cut(s)	425
BlsI	GCNGC	3 cut(s)	137, 229, 454
Bme1390I	CCNGG	4 cut(s)	313, 323, 406, 533
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	2 cut(s)	474, 496
BmgT120I	GGNCC	3 cut(s)	315, 316, 506
BmiI	GGNNCC	3 cut(s)	316, 317, 403
BmrFI	CCNGG	4 cut(s)	313, 323, 406, 533
BpiI	GAAGAC	1 cut(s)	392
BpmI	CTGGAG	2 cut(s)	305, 316
Bpu10I	CCTNAGC	1 cut(s)	67
Bpu1102I	GCTNAGC	1 cut(s)	425
BpuMI	CCSGG	2 cut(s)	313, 406
BsaJI	CCNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	323, 533
BseDI	CCNNGG	1 cut(s)	312
BseGI	GGATG	3 cut(s)	123, 450, 487
BseMII	CTCAG	2 cut(s)	416, 528
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	3 cut(s)	76, 79, 160
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	2 cut(s)	122, 239
BsgI	GTGCAG	1 cut(s)	455
Bsh1236I	CGCG	1 cut(s)	467
Bsh1285I	CGRYCG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	317, 508
BsiEI	CGRYCG	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	312, 405
BsmAI	GTCTC	3 cut(s)	289, 313, 464
BsmBI	CGTCTC	2 cut(s)	289, 464
BsnI	GGCC	2 cut(s)	317, 508
BsoBI	CYCGRG	1 cut(s)	155
Bsp120I	GGGCCC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	162, 319
Bsp143I	GATC	2 cut(s)	510, 573
Bsp1720I	GCTNAGC	1 cut(s)	425
BspACI	CCGC	4 cut(s)	127, 452, 467, 605
BspANI	GGCC	2 cut(s)	317, 508
BspCNI	CTCAG	2 cut(s)	417, 529
BspFNI	CGCG	1 cut(s)	467
BspLI	GGNNCC	3 cut(s)	316, 317, 403
BspMAI	CTGCAG	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	312
BssMI	GATC	2 cut(s)	510, 573
Bst2UI	CCWGG	2 cut(s)	323, 533
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	219, 280, 570
BstDEI	CTNAG	3 cut(s)	67, 425, 537
BstF5I	GGATG	3 cut(s)	123, 450, 487
BstFNI	CGCG	1 cut(s)	467
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	4 cut(s)	140, 457, 568, 602
BstKTI	GATC	2 cut(s)	513, 576
BstMAI	GTCTC	3 cut(s)	289, 313, 464
BstMBI	GATC	2 cut(s)	510, 573
BstMCI	CGRYCG	1 cut(s)	576
BstMWI	GCNNNNNNNGC	3 cut(s)	135, 227, 233
BstNI	CCWGG	2 cut(s)	323, 533
BstSCI	CCNGG	4 cut(s)	311, 321, 404, 531
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	319
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	122, 239
BstV2I	GAAGAC	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	317, 508
BtgZI	GCGATG	2 cut(s)	217, 236
BtrI	CACGTC	2 cut(s)	474, 496
BtsCI	GGATG	3 cut(s)	123, 450, 487
Cac8I	GCNNGC	3 cut(s)	219, 280, 570
CfoI	GCGC	4 cut(s)	140, 457, 568, 602
Cfr13I	GGNCC	3 cut(s)	315, 316, 506
CseI	GACGC	3 cut(s)	267, 271, 473
Csp6I	GTAC	1 cut(s)	477
CviQI	GTAC	1 cut(s)	477
DdeI	CTNAG	3 cut(s)	67, 425, 537
DpnI	GATC	2 cut(s)	512, 575
DpnII	GATC	2 cut(s)	510, 573
DrdI	GACNNNNNNGTC	2 cut(s)	305, 394
DseDI	GACNNNNNNGTC	2 cut(s)	305, 394
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	2 cut(s)	162, 319
Eco53kI	GAGCTC	1 cut(s)	160
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	2 cut(s)	315, 316
EcoRII	CCWGG	2 cut(s)	321, 531
EcoT38I	GRGCYC	2 cut(s)	162, 319
Esp3I	CGTCTC	2 cut(s)	289, 464
FaiI	YATR	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	136, 228, 453
FokI	GGATG	3 cut(s)	110, 457, 494
FriOI	GRGCYC	2 cut(s)	162, 319
Fsp4HI	GCNGC	3 cut(s)	136, 228, 453
FspBI	CTAG	2 cut(s)	245, 591
GlaI	GCGC	4 cut(s)	139, 456, 567, 601
GluI	GCNGC	3 cut(s)	136, 228, 453
GsuI	CTGGAG	2 cut(s)	305, 316
HaeII	RGCGCY	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	317, 508
HapII	CCGG	2 cut(s)	312, 405
HgaI	GACGC	3 cut(s)	267, 271, 473
HhaI	GCGC	4 cut(s)	140, 457, 568, 602
Hin6I	GCGC	4 cut(s)	138, 455, 566, 600
HinP1I	GCGC	4 cut(s)	138, 455, 566, 600
HinfI	GANTC	3 cut(s)	77, 167, 368
HpaII	CCGG	2 cut(s)	312, 405
HphI	GGTGA	4 cut(s)	171, 178, 538, 556
Hpy166II	GTNNAC	2 cut(s)	477, 529
Hpy188I	TCNGA	1 cut(s)	344
Hpy188III	TCNNGA	1 cut(s)	514
Hpy8I	GTNNAC	2 cut(s)	477, 529
Hpy99I	CGWCG	2 cut(s)	77, 359
HpyAV	CCTTC	2 cut(s)	41, 193
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	4 cut(s)	389, 432, 473, 495
HpyCH4V	TGCA	2 cut(s)	116, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	135, 227, 233
HpyF3I	CTNAG	3 cut(s)	67, 425, 537
HpySE526I	ACGT	4 cut(s)	389, 432, 473, 495
HspAI	GCGC	4 cut(s)	138, 455, 566, 600
Kzo9I	GATC	2 cut(s)	510, 573
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	2 cut(s)	122, 239
MaeI	CTAG	2 cut(s)	245, 591
MaeII	ACGT	4 cut(s)	389, 432, 473, 495
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	2 cut(s)	512, 575
MboI	GATC	2 cut(s)	510, 573
MboII	GAAGA	5 cut(s)	40, 43, 397, 559, 562
MhlI	GDGCHC	2 cut(s)	162, 319
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	86
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	1 cut(s)	424
MspI	CCGG	2 cut(s)	312, 405
MspR9I	CCNGG	4 cut(s)	313, 323, 406, 533
MvaI	CCWGG	2 cut(s)	323, 533
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	3 cut(s)	135, 227, 233
NciI	CCSGG	2 cut(s)	313, 406
NdeII	GATC	2 cut(s)	510, 573
NlaIV	GGNNCC	3 cut(s)	316, 317, 403
NmeAIII	GCCGAG	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	77, 368
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	137, 229, 454
Ple19I	CGATCG	1 cut(s)	576
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	321, 531
PspGI	CCWGG	2 cut(s)	321, 531
PspN4I	GGNNCC	3 cut(s)	316, 317, 403
PspOMI	GGGCCC	1 cut(s)	315
PspPI	GGNCC	3 cut(s)	315, 316, 506
PstI	CTGCAG	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	576
PvuII	CAGCTG	1 cut(s)	424
RsaI	GTAC	1 cut(s)	478
RsaNI	GTAC	1 cut(s)	477
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	3 cut(s)	136, 228, 453
Sau3AI	GATC	2 cut(s)	510, 573
Sau96I	GGNCC	3 cut(s)	315, 316, 506
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	4 cut(s)	313, 323, 406, 533
SduI	GDGCHC	2 cut(s)	162, 319
SfcI	CTRYAG	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	236
SsiI	CCGC	4 cut(s)	127, 452, 467, 605
SspMI	CTAG	2 cut(s)	245, 591
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	4 cut(s)	311, 321, 404, 531
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	4 cut(s)	392, 435, 476, 498
TaqI	TCGA	2 cut(s)	75, 354
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	2 cut(s)	77, 368
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TseI	GCWGC	2 cut(s)	135, 227
TspDTI	ATGAA	2 cut(s)	112, 398
TspGWI	ACGGA	5 cut(s)	7, 47, 476, 494, 533
XspI	CTAG	2 cut(s)	245, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.