Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011618.1

Orthogroup ID

OG0004993

Physical Location & Seq

Genomic Coordinates Forward (+)

17095 .. 17706

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011618.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgaaaaaccatctccctctcacctcactctcactcctcatcttcctcttcctcctccgctcacccccagccgtcggattcccctctcccgctccctccaccaacgactcagatttcatccgcaccagttgcggcaccaccctctaccccgagctctgctactcctccctctcccgctacgccaacgccgtccagagcaacccttctcagctcgccaaggtcgccatcggcgtcagcctctccaaagccaagcgcatggccgccttcgtctccaacctctcccgccacgccgactacggatccgaccaccgcgccaccgccgccctccacgactgcttcagcaactttgatgacgccgtcgatcagattcgcgactcgctccggcagatgaagagcctcggttcgggtcctgggtcggtccggtttcagatgagcaacgtccagacgtggatgagcgccgctctgacggaccaggatacgtgtacggacgggtttcaggacgtgccggacgggtcggtcaagtccgacgtggtgaacaaggttgagaaagtgaagaaggtcacgagtaatgccctcgcgctcgtcaacagagtggcggagaaagcgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

203

Amino Acids

21.88

Weight (kDa)

8.69

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14890 AT1G23205 AT2G01610
fragaria_vesca	FvH4_4g33950 FvH4_4g33960
malus_domestica	MD00G1133700.v1.1 MD00G1134000.v1.1 MD16G1021700.v1.1
prunus_persica	Prupe.1G330900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0443481 RchiOBHm_Chr4g0443491
rosa_laevigata	RLG00000005924 RLG00000005925
rosa_multiflora	Rmu_sc0001118.1_g000032 Rmu_sc0009670.1_g000005 Rmu_sc0011618.1_g000002 Rmu_sc0011618.1_g000006
rosa_roxburghii	Rroxscaffold_5G00384030
rosa_rugosa	Rorug04G0346600 Rorug04G0346700
rosa_samantha	Rh4AG402100 Rh4AG402200 Rh4BG413600 Rh4BG413800 Rh4CG429200 Rh4CG429300 Rh4DG409200 Rh4DG409300
rosa_wichuraiana	Rw4G034670 Rw4G034680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	515
AccB1I	GGYRCC	1 cut(s)	134
AccBSI	CCGCTC	3 cut(s)	60, 92, 461
AccII	CGCG	3 cut(s)	312, 372, 578
AclWI	GGATC	2 cut(s)	294, 307
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	322
AcyI	GRCGYC	2 cut(s)	231, 354
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	74, 403
AflIII	ACRYGT	1 cut(s)	479
AjiI	CACGTC	3 cut(s)	447, 502, 529
AjnI	CCWGG	2 cut(s)	409, 471
AluBI	AGCT	2 cut(s)	154, 211
AluI	AGCT	2 cut(s)	154, 211
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	274
AlwI	GGATC	2 cut(s)	294, 307
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	1 cut(s)	258
AspLEI	GCGC	4 cut(s)	255, 314, 458, 580
AspS9I	GGNCC	3 cut(s)	407, 418, 469
AsuHPI	GGTGA	3 cut(s)	13, 54, 544
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	3 cut(s)	407, 418, 469
BamHI	GGATCC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	562
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	2 cut(s)	18, 233
BceAI	ACGGC	3 cut(s)	56, 173, 341
BciT130I	CCWGG	2 cut(s)	411, 473
BciVI	GTATCC	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	4 cut(s)	133, 261, 321, 459
BlsI	GCNGC	4 cut(s)	134, 262, 322, 460
Bme1390I	CCNGG	2 cut(s)	411, 473
Bme18I	GGWCC	3 cut(s)	407, 418, 469
BmeT110I	CYCGRG	1 cut(s)	149
BmgBI	CACGTC	3 cut(s)	447, 502, 529
BmgT120I	GGNCC	3 cut(s)	407, 418, 469
BmiI	GGNNCC	3 cut(s)	136, 301, 408
BmrFI	CCNGG	2 cut(s)	411, 473
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BsaAI	YACGTR	1 cut(s)	480
BsaHI	GRCGYC	2 cut(s)	231, 354
BsaJI	CCNNGG	3 cut(s)	216, 397, 410
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 403
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	411, 473
BseDI	CCNNGG	3 cut(s)	216, 397, 410
BseGI	GGATG	2 cut(s)	117, 456
BseLI	CCNNNNNNNGG	2 cut(s)	74, 403
BseMII	CTCAG	2 cut(s)	123, 221
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	3 cut(s)	26, 44, 154
BseYI	CCCAGC	1 cut(s)	67
Bsh1236I	CGCG	3 cut(s)	312, 372, 578
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	382, 421, 506
BslI	CCNNNNNNNGG	2 cut(s)	74, 403
BsmAI	GTCTC	1 cut(s)	274
BsmBI	CGTCTC	1 cut(s)	274
BsnI	GGCC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	299, 361
Bsp68I	TCGCGA	1 cut(s)	372
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	122, 220
BspFNI	CGCG	3 cut(s)	312, 372, 578
BspLI	GGNNCC	3 cut(s)	136, 301, 408
BspPI	GGATC	2 cut(s)	294, 307
BspQI	GCTCTTC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	134
BsrBI	CCGCTC	3 cut(s)	60, 92, 461
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	216, 397, 410
BssMI	GATC	2 cut(s)	299, 361
BssNI	GRCGYC	2 cut(s)	231, 354
BssSI	CACGAG	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	562
Bst2UI	CCWGG	2 cut(s)	411, 473
Bst6I	CTCTTC	2 cut(s)	53, 386
BstACI	GRCGYC	2 cut(s)	231, 354
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	480
BstC8I	GCNNGC	2 cut(s)	213, 607
BstDEI	CTNAG	2 cut(s)	109, 207
BstF5I	GGATG	2 cut(s)	117, 456
BstFNI	CGCG	3 cut(s)	312, 372, 578
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	4 cut(s)	255, 314, 458, 580
BstKTI	GATC	2 cut(s)	302, 364
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	2 cut(s)	299, 361
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 221, 320, 602
BstNI	CCWGG	2 cut(s)	411, 473
BstSCI	CCNGG	2 cut(s)	409, 471
BstUI	CGCG	3 cut(s)	312, 372, 578
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	1 cut(s)	260
BtrI	CACGTC	3 cut(s)	447, 502, 529
BtsCI	GGATG	2 cut(s)	117, 456
BtuMI	TCGCGA	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	213, 607
CfoI	GCGC	4 cut(s)	255, 314, 458, 580
Cfr13I	GGNCC	3 cut(s)	407, 418, 469
CpoI	CGGWCCG	1 cut(s)	418
CseI	GACGC	2 cut(s)	220, 362
Csp6I	GTAC	1 cut(s)	483
CspI	CGGWCCG	1 cut(s)	418
CviAII	CATG	1 cut(s)	256
CviJI	RGCY	8 cut(s)	71, 154, 211, 237, 248, 260, 396, 609
CviKI_1	RGCY	8 cut(s)	71, 154, 211, 237, 248, 260, 396, 609
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	2 cut(s)	109, 207
DpnI	GATC	2 cut(s)	301, 363
DpnII	GATC	2 cut(s)	299, 361
DrdI	GACNNNNNNGTC	1 cut(s)	515
DseDI	GACNNNNNNGTC	1 cut(s)	515
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	53, 386
EarI	CTCTTC	2 cut(s)	53, 386
EciI	GGCGGA	1 cut(s)	611
Ecl136II	GAGCTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	3 cut(s)	407, 418, 469
Eco53kI	GAGCTC	1 cut(s)	154
Eco57I	CTGAAG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	409, 471
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	274
FaeI	CATG	1 cut(s)	259
FaiI	YATR	1 cut(s)	257
FatI	CATG	1 cut(s)	255
FauI	CCCGC	4 cut(s)	97, 182, 290, 598
Fnu4HI	GCNGC	4 cut(s)	133, 261, 321, 459
FokI	GGATG	2 cut(s)	104, 463
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	133, 261, 321, 459
GlaI	GCGC	4 cut(s)	254, 313, 457, 579
GluI	GCNGC	4 cut(s)	133, 261, 321, 459
GsaI	CCCAGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	1 cut(s)	260
HapII	CCGG	3 cut(s)	382, 421, 506
HgaI	GACGC	2 cut(s)	220, 362
HhaI	GCGC	4 cut(s)	255, 314, 458, 580
Hin1I	GRCGYC	2 cut(s)	231, 354
Hin1II	CATG	1 cut(s)	259
Hin6I	GCGC	4 cut(s)	253, 312, 456, 578
HinP1I	GCGC	4 cut(s)	253, 312, 456, 578
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	4 cut(s)	78, 107, 367, 374
HpaII	CCGG	3 cut(s)	382, 421, 506
HphI	GGTGA	3 cut(s)	13, 54, 544
Hpy166II	GTNNAC	3 cut(s)	483, 535, 586
Hpy188I	TCNGA	7 cut(s)	77, 112, 304, 366, 429, 465, 526
Hpy188III	TCNNGA	5 cut(s)	193, 371, 442, 497, 562
Hpy8I	GTNNAC	3 cut(s)	483, 535, 586
Hpy99I	CGWCG	3 cut(s)	77, 362, 530
HpyAV	CCTTC	3 cut(s)	213, 274, 550
HpyCH4IV	ACGT	5 cut(s)	438, 446, 479, 501, 528
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 221, 320, 602
HpyF3I	CTNAG	2 cut(s)	109, 207
HpySE526I	ACGT	5 cut(s)	438, 446, 479, 501, 528
Hsp92I	GRCGYC	2 cut(s)	231, 354
Hsp92II	CATG	1 cut(s)	259
HspAI	GCGC	4 cut(s)	253, 312, 456, 578
Kzo9I	GATC	2 cut(s)	299, 361
LguI	GCTCTTC	1 cut(s)	386
LmnI	GCTCC	2 cut(s)	97, 384
MaeII	ACGT	5 cut(s)	438, 446, 479, 501, 528
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	2 cut(s)	301, 363
MbiI	CCGCTC	3 cut(s)	60, 92, 461
MboI	GATC	2 cut(s)	299, 361
MboII	GAAGA	4 cut(s)	34, 40, 403, 565
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	101, 368
MmeI	TCCRAC	4 cut(s)	55, 297, 327, 549
MspI	CCGG	3 cut(s)	382, 421, 506
MspR9I	CCNGG	2 cut(s)	411, 473
MvaI	CCWGG	2 cut(s)	411, 473
MvnI	CGCG	3 cut(s)	312, 372, 578
MwoI	GCNNNNNNNGC	4 cut(s)	129, 221, 320, 602
NdeII	GATC	2 cut(s)	299, 361
NlaIII	CATG	1 cut(s)	259
NlaIV	GGNNCC	3 cut(s)	136, 301, 408
NmuCI	GTSAC	1 cut(s)	559
NruI	TCGCGA	1 cut(s)	372
PciSI	GCTCTTC	1 cut(s)	386
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 228
PfeI	GAWTC	2 cut(s)	78, 367
PflFI	GACNNNGTC	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	134, 262, 322, 460
PleI	GAGTC	2 cut(s)	101, 368
PpsI	GAGTC	2 cut(s)	101, 368
Ppu21I	YACGTR	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	409, 471
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	2 cut(s)	409, 471
PspN4I	GGNNCC	3 cut(s)	136, 301, 408
PspPI	GGNCC	3 cut(s)	407, 418, 469
PspPPI	RGGWCCY	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	299
PsyI	GACNNNGTC	1 cut(s)	356
RruI	TCGCGA	1 cut(s)	372
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
Rsr2I	CGGWCCG	1 cut(s)	418
RsrII	CGGWCCG	1 cut(s)	418
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	386
SatI	GCNGC	4 cut(s)	133, 261, 321, 459
Sau3AI	GATC	2 cut(s)	299, 361
Sau96I	GGNCC	3 cut(s)	407, 418, 469
SchI	GAGTC	2 cut(s)	101, 368
ScrFI	CCNGG	2 cut(s)	411, 473
SduI	GDGCHC	1 cut(s)	156
SinI	GGWCC	3 cut(s)	407, 418, 469
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	409, 471
StyI	CCWWGG	1 cut(s)	216
TaiI	ACGT	5 cut(s)	441, 449, 482, 504, 531
TaqI	TCGA	1 cut(s)	360
TaqII	GACCGA	2 cut(s)	406, 505
TauI	GCSGC	4 cut(s)	135, 263, 323, 461
TfiI	GAWTC	2 cut(s)	78, 367
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	3 cut(s)	17, 106, 404
TspGWI	ACGGA	3 cut(s)	312, 482, 500
Tth111I	GACNNNGTC	1 cut(s)	356
VpaK11BI	GGWCC	3 cut(s)	407, 418, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.