Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002649

Physical Location & Seq

Genomic Coordinates Forward (+)

14318935 .. 14321195

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G090600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1788 bp

ATGGTTGCAGAATCGTGGTTTCGCAGTCTTTGGAAGACTAAAAGGAAGCATGAGGGGCCTGAGAAAGCAGTGGTTGGAGTTTTGGCCTTTGAAGTTGCAAGCTTGATGTCTAAGCTGGTCCATCTATGGCAATTTCTGAGTGATAAACAGGTTACTAAGCTAAGAGAAGAAATCACAAATTCAGTGGGTATAAAAAAGCTTGTGTCAGATGATGATGACTTCATTGTAGGGTTGATATGCGCTGAATTGATTGAGAATATGGTCCGCGTGGCAAAATCTGTGGCCAGGCTTGCCAAAAATTGTACTGATCCTGCATTGAAGAGTTTTGAGAATGCTTTTACTGAGTGGATCAATAATGGTATTGACCCTTATGGATGGGAATTTTCATGGAAGAAGATGGAAAGGAAAGCTAAGAAGATGGAGAAGTTCATTTCAGCAAATGCAAATTTGTATGAAGAGATGGAAGTGCTTACAGAGCTTGAACAAAATTTGAGGAGAATGAAGGGAAATGATGACTTAGATGGTGTGAATTTGCTTGAGTTTCAGAAGAAGGTAGTGTGGAAGCAGCAGGAGGTGAAGAATTTGAAAGAGGTCTCTCTGTGGAACAGGACTTATGATTACATAGTCCTCCTTTTGGCAAGATCTCTCTTCACAATGTACAGTAGGATCAATCATGTCTTTGGAATTCAACAAATGGTAGATGCTGGTGATACCAAAGATTCTGGAATTATTAATTCTGATCACATTAATCGTAGCAATTCAGTTTCTGCACTAATGCAATCTTCAGTCCGTCCACCTAAGAATGGTCTTCCAAGATTTGCTTCAGGTCCCCTTGGGAGGTTTAGTGCTATATCAGGGCCAATATTGGAAACAAATAAAACCAACATTTGCTATTCAGGTCCTCTTGGTGACTCAATTACAAAATCAGGCCCTATTTCGGGAAAGAATAGAGATGTCAACTTTTTTTCAGGCCCTCTTGGGAGGTCAACAACAAAGTCAGGCGCAATTGCTGCAACGAATAGAACCATCAGGAAGTTGTGGAATCACTCACACACTAATCATGGGAAGAAATCACACACAAAGTCCAATAGGTTGACTCAAGTTGGACCTTTCAAAGGATGCATGATAACTGCAAACAATTCACCCATCACCAATTGCTACTTGAGTTCAAGTGATGTTCGTTCAGCAATTCTCAATGTAGACATTCTAGCTTCTGGCAACAAAAGTCATCCTAGTACATCAATCTTCAGTTCCAAGCACAGGTTGTTGGATGCCCCACCAGAAACCCTTGGTGCTGCTGCCTTAGCACTGCACTATGCAAATGTTATCATCATAATTGAGAAGTTAGTTGCATCTCCTCACTTGATTGGTCTTGATGCAAGAGATGACCTGTACAATATGCTGCCTGCAAGTGTGAGAGCTACATTAAGGGCCAGACTAAAGCCATACAGTAAGAGTTTGACTTCATCAGTTTATGATACAGTTCTTGCTGGAGAGTGGAATGAGGCAATGGCAGGAATATTAGAGTGGCTGGCACCTCTTGCTCATAATATGATAAGATGGCAATCCGAGAGGAGTTTTGAACAGCAAAGCTTGGTTTCCAGGACACATGTGCTTTTGGCACAAACCCTTTACTTTGCAAATCAGCAAAAGACAGAAGCAACAATAACAGAGCTGCTTGTTGGGTTGAATTATGTCTGGCGATTTGGCAGAGAAGTCAATGCAAAAGCTCTATTAGAGAGTGGTAGCAGTAGAATCTATGATGAATTTTTGGATCTGGATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

596

Amino Acids

66.59

Weight (kDa)

9.27

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04550 AT5G04550
fragaria_vesca	FvH4_3g07590 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360
malus_domestica	MD02G1244700.v1.1 MD07G1072400.v1.1
prunus_persica	Prupe.2G090600_v2.0.a1
pyrus_communis	pycom02g21060 pycom07g05560
rosa_chinensis	RchiOBHm_Chr1g0334451 RchiOBHm_Chr5g0011101 RchiOBHm_Chr5g0011111
rosa_laevigata	RLG00000029452 RLG00000031810 RLG00000031811
rosa_multiflora	Rmu_ssc0000404.1_g000013
rosa_roxburghii	Rroxscaffold_1G00065290 Rroxscaffold_1G00065300 Rroxscaffold_1G00065310 Rroxscaffold_4G00316830
rosa_rugosa	Rorug01G0113900 Rorug01G0114000 Rorug04G0455200
rosa_samantha	Rh1AG139100 Rh1BG105400 Rh1CG131100 Rh1DG143000 Rh5AG087500 Rh5CG095100 Rh5CG095200 Rh5DG081900
rosa_wichuraiana	Rw0G000190 Rw0G017760 Rw1G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1534
AccI	GTMKAC	1 cut(s)	1200
AccII	CGCG	1 cut(s)	267
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	4 cut(s)	302, 356, 674, 1782
AcoI	YGGCCR	1 cut(s)	282
AcsI	RAATTY	8 cut(s)	178, 380, 445, 487, 529, 580, 684, 1766
AcuI	CTGAAG	3 cut(s)	768, 807, 1231
AfaI	GTAC	4 cut(s)	304, 659, 1237, 1394
AfiI	CCNNNNNNNGG	7 cut(s)	634, 803, 837, 937, 938, 1115, 1260
AflIII	ACRYGT	1 cut(s)	1609
AgsI	TTSAA	9 cut(s)	92, 319, 482, 586, 689, 1114, 1170, 1583, 1690
AjnI	CCWGG	2 cut(s)	284, 1601
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
Alw26I	GTCTC	1 cut(s)	598
AlwI	GGATC	4 cut(s)	302, 356, 674, 1782
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	7 cut(s)	56, 84, 282, 857, 928, 970, 1431
ApeKI	GCWGC	6 cut(s)	565, 1010, 1295, 1298, 1402, 1675
ApoI	RAATTY	8 cut(s)	178, 380, 445, 487, 529, 580, 684, 1766
AseI	ATTAAT	2 cut(s)	732, 747
AspLEI	GCGC	2 cut(s)	242, 1004
AsuHPI	GGTGA	5 cut(s)	586, 719, 920, 1134, 1141
AvaII	GGWCC	5 cut(s)	118, 262, 827, 899, 1106
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	1534
BbsI	GAAGAC	2 cut(s)	41, 800
BbvI	GCAGC	6 cut(s)	577, 997, 1282, 1285, 1389, 1662
BciT130I	CCWGG	2 cut(s)	286, 1603
BclI	TGATCA	1 cut(s)	739
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	2 cut(s)	1208, 1233
BglII	AGATCT	1 cut(s)	641
BisI	GCNGC	6 cut(s)	566, 1011, 1296, 1299, 1403, 1676
BlsI	GCNGC	6 cut(s)	567, 1012, 1297, 1300, 1404, 1677
Bme1390I	CCNGG	2 cut(s)	286, 1603
Bme18I	GGWCC	5 cut(s)	118, 262, 827, 899, 1106
BmiI	GGNNCC	3 cut(s)	57, 829, 1536
BmrFI	CCNGG	2 cut(s)	286, 1603
BmsI	GCATC	5 cut(s)	691, 1109, 1261, 1361, 1366
BpiI	GAAGAC	2 cut(s)	41, 800
BpmI	CTGGAG	1 cut(s)	1512
Bpu10I	CCTNAGC	1 cut(s)	1303
BpuEI	CTTGAG	3 cut(s)	557, 1083, 1183
BsaBI	GATNNNNATC	1 cut(s)	1564
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	832, 1288
BsaXI	ACNNNNNCTCC	2 cut(s)	829, 859
Bsc4I	CCNNNNNNNGG	7 cut(s)	634, 803, 837, 937, 938, 1115, 1260
Bse3DI	GCAATG	1 cut(s)	1515
Bse8I	GATNNNNATC	1 cut(s)	1564
BseBI	CCWGG	2 cut(s)	286, 1603
BseDI	CCNNGG	2 cut(s)	832, 1288
BseGI	GGATG	5 cut(s)	380, 1124, 1228, 1276, 1786
BseJI	GATNNNNATC	1 cut(s)	1564
BseLI	CCNNNNNNNGG	7 cut(s)	634, 803, 837, 937, 938, 1115, 1260
BseMI	GCAATG	1 cut(s)	1515
BseMII	CTCAG	3 cut(s)	51, 128, 333
BseRI	GAGGAG	3 cut(s)	508, 1347, 1588
BseXI	GCAGC	6 cut(s)	577, 997, 1282, 1285, 1389, 1662
BsgI	GTGCAG	2 cut(s)	753, 1295
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	7 cut(s)	58, 86, 284, 859, 930, 972, 1433
BshNI	GGYRCC	1 cut(s)	1534
BslFI	GGGAC	1 cut(s)	813
BslI	CCNNNNNNNGG	7 cut(s)	634, 803, 837, 937, 938, 1115, 1260
BsmAI	GTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	813
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	7 cut(s)	58, 86, 284, 859, 930, 972, 1433
Bso31I	GGTCTC	1 cut(s)	598
Bsp1407I	TGTACA	2 cut(s)	657, 1392
Bsp143I	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	7 cut(s)	58, 86, 284, 859, 930, 972, 1433
BspCNI	CTCAG	3 cut(s)	52, 129, 334
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	57, 829, 1536
BspPI	GGATC	4 cut(s)	302, 356, 674, 1782
BspT107I	GGYRCC	1 cut(s)	1534
BspTNI	GGTCTC	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	1515
BsrGI	TGTACA	2 cut(s)	657, 1392
BssECI	CCNNGG	2 cut(s)	832, 1288
BssMI	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
BssT1I	CCWWGG	2 cut(s)	832, 1288
Bst2UI	CCWGG	2 cut(s)	286, 1603
Bst4CI	ACNGT	3 cut(s)	662, 1451, 1483
Bst6I	CTCTTC	3 cut(s)	314, 450, 653
BstAPI	GCANNNNNTGC	2 cut(s)	1010, 1541
BstAUI	TGTACA	2 cut(s)	657, 1392
BstC8I	GCNNGC	4 cut(s)	100, 291, 1407, 1533
BstENI	CCTNNNNNAGG	1 cut(s)	1113
BstF5I	GGATG	5 cut(s)	380, 1124, 1228, 1276, 1786
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	2 cut(s)	242, 1004
BstKTI	GATC	6 cut(s)	310, 351, 644, 669, 742, 1777
BstMAI	GTCTC	1 cut(s)	598
BstMBI	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
BstMWI	GCNNNNNNNGC	6 cut(s)	55, 290, 475, 1010, 1304, 1541
BstNI	CCWGG	2 cut(s)	286, 1603
BstNSI	RCATGY	1 cut(s)	1613
BstSCI	CCNGG	2 cut(s)	284, 1601
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	6 cut(s)	577, 997, 1282, 1285, 1389, 1662
BstV2I	GAAGAC	2 cut(s)	41, 800
BstX2I	RGATCY	2 cut(s)	641, 1774
BstYI	RGATCY	2 cut(s)	641, 1774
BsuRI	GGCC	7 cut(s)	58, 86, 284, 859, 930, 972, 1433
BtsCI	GGATG	5 cut(s)	380, 1124, 1228, 1276, 1786
BtsI	GCAGTG	2 cut(s)	75, 1307
BtsIMutI	CAGTG	3 cut(s)	75, 189, 1307
Cac8I	GCNNGC	4 cut(s)	100, 291, 1407, 1533
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	2 cut(s)	242, 1004
Csp6I	GTAC	4 cut(s)	303, 658, 1236, 1393
CspCI	CAANNNNNGTGG	4 cut(s)	165, 200, 261, 296
CviAII	CATG	6 cut(s)	50, 387, 674, 1061, 1123, 1610
CviQI	GTAC	4 cut(s)	303, 658, 1236, 1393
DpnI	GATC	6 cut(s)	309, 350, 643, 668, 741, 1776
DpnII	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
EaeI	YGGCCR	1 cut(s)	282
Eam1104I	CTCTTC	3 cut(s)	314, 450, 653
EarI	CTCTTC	3 cut(s)	314, 450, 653
Eco130I	CCWWGG	2 cut(s)	832, 1288
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	5 cut(s)	118, 262, 827, 899, 1106
Eco57I	CTGAAG	3 cut(s)	768, 807, 1231
EcoNI	CCTNNNNNAGG	1 cut(s)	1113
EcoO109I	RGGNCCY	5 cut(s)	56, 827, 899, 929, 971
EcoRI	GAATTC	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	284, 1601
EcoT14I	CCWWGG	2 cut(s)	832, 1288
EcoT22I	ATGCAT	1 cut(s)	1124
ErhI	CCWWGG	2 cut(s)	832, 1288
FaeI	CATG	6 cut(s)	53, 390, 677, 1064, 1126, 1613
FalI	AAGNNNNNCTT	2 cut(s)	805, 837
FaqI	GGGAC	1 cut(s)	813
FatI	CATG	6 cut(s)	49, 386, 673, 1060, 1122, 1609
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	1200
Fnu4HI	GCNGC	6 cut(s)	566, 1011, 1296, 1299, 1403, 1676
FokI	GGATG	4 cut(s)	387, 1131, 1215, 1283
Fsp4HI	GCNGC	6 cut(s)	566, 1011, 1296, 1299, 1403, 1676
FspBI	CTAG	2 cut(s)	1208, 1233
GlaI	GCGC	2 cut(s)	241, 1003
GluI	GCNGC	6 cut(s)	566, 1011, 1296, 1299, 1403, 1676
GsuI	CTGGAG	1 cut(s)	1512
HaeIII	GGCC	7 cut(s)	58, 86, 284, 859, 930, 972, 1433
HhaI	GCGC	2 cut(s)	242, 1004
Hin1II	CATG	6 cut(s)	53, 390, 677, 1064, 1126, 1613
Hin6I	GCGC	2 cut(s)	240, 1002
HinP1I	GCGC	2 cut(s)	240, 1002
HincII	GTYRAC	3 cut(s)	958, 987, 1095
HindII	GTYRAC	3 cut(s)	958, 987, 1095
HindIII	AAGCTT	3 cut(s)	100, 197, 1591
HinfI	GANTC	6 cut(s)	11, 719, 911, 1042, 1096, 1755
HphI	GGTGA	5 cut(s)	586, 719, 920, 1134, 1141
Hpy166II	GTNNAC	5 cut(s)	794, 958, 987, 1095, 1201
Hpy188I	TCNGA	5 cut(s)	138, 208, 546, 739, 1570
Hpy188III	TCNNGA	5 cut(s)	723, 939, 1030, 1373, 1778
Hpy8I	GTNNAC	5 cut(s)	794, 958, 987, 1095, 1201
HpyAV	CCTTC	2 cut(s)	496, 544
HpyCH4III	ACNGT	3 cut(s)	662, 1451, 1483
HpyF10VI	GCNNNNNNNGC	6 cut(s)	55, 290, 475, 1010, 1304, 1541
Hsp92II	CATG	6 cut(s)	53, 390, 677, 1064, 1126, 1613
HspAI	GCGC	2 cut(s)	240, 1002
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
Lsp1109I	GCAGC	6 cut(s)	577, 997, 1282, 1285, 1389, 1662
LweI	GCATC	5 cut(s)	691, 1109, 1261, 1361, 1366
MaeI	CTAG	2 cut(s)	1208, 1233
MaeIII	GTNAC	2 cut(s)	151, 908
MalI	GATC	6 cut(s)	309, 350, 643, 668, 741, 1776
MboI	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
MfeI	CAATTG	2 cut(s)	1005, 1153
MflI	RGATCY	2 cut(s)	641, 1774
MlsI	TGGCCA	1 cut(s)	284
MluNI	TGGCCA	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	905, 1090
MmeI	TCCRAC	3 cut(s)	55, 1084, 1248
Mox20I	TGGCCA	1 cut(s)	284
Mph1103I	ATGCAT	1 cut(s)	1124
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	3 cut(s)	732, 747, 1427
Msp20I	TGGCCA	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	286, 1603
MunI	CAATTG	2 cut(s)	1005, 1153
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	286, 1603
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	6 cut(s)	55, 290, 475, 1010, 1304, 1541
NdeII	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
NlaIII	CATG	6 cut(s)	53, 390, 677, 1064, 1126, 1613
NlaIV	GGNNCC	3 cut(s)	57, 829, 1536
NmuCI	GTSAC	1 cut(s)	908
NsiI	ATGCAT	1 cut(s)	1124
NspI	RCATGY	1 cut(s)	1613
PciI	ACATGT	1 cut(s)	1609
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	11, 719, 1042, 1755
PfoI	TCCNGGA	1 cut(s)	1601
PkrI	GCNGC	6 cut(s)	567, 1012, 1297, 1300, 1404, 1677
PleI	GAGTC	2 cut(s)	905, 1090
PpsI	GAGTC	2 cut(s)	905, 1090
PpuMI	RGGWCCY	2 cut(s)	827, 899
PscI	ACATGT	1 cut(s)	1609
PshBI	ATTAAT	2 cut(s)	732, 747
Psp5II	RGGWCCY	2 cut(s)	827, 899
Psp6I	CCWGG	2 cut(s)	284, 1601
PspGI	CCWGG	2 cut(s)	284, 1601
PspN4I	GGNNCC	3 cut(s)	57, 829, 1536
PspPPI	RGGWCCY	2 cut(s)	827, 899
PstNI	CAGNNNCTG	1 cut(s)	767
PsuI	RGATCY	2 cut(s)	641, 1774
RsaI	GTAC	4 cut(s)	304, 659, 1237, 1394
RsaNI	GTAC	4 cut(s)	303, 658, 1236, 1393
SaqAI	TTAA	3 cut(s)	732, 747, 1427
SatI	GCNGC	6 cut(s)	566, 1011, 1296, 1299, 1403, 1676
Sau3AI	GATC	6 cut(s)	307, 348, 641, 666, 739, 1774
SchI	GAGTC	2 cut(s)	905, 1090
ScrFI	CCNGG	2 cut(s)	286, 1603
SfaNI	GCATC	5 cut(s)	691, 1109, 1261, 1361, 1366
SinI	GGWCC	5 cut(s)	118, 262, 827, 899, 1106
SmlI	CTYRAG	3 cut(s)	536, 1098, 1162
SmoI	CTYRAG	3 cut(s)	536, 1098, 1162
SsiI	CCGC	1 cut(s)	265
SspI	AATATT	2 cut(s)	864, 1521
SspMI	CTAG	2 cut(s)	1208, 1233
StyD4I	CCNGG	2 cut(s)	284, 1601
StyI	CCWWGG	2 cut(s)	832, 1288
TaaI	ACNGT	3 cut(s)	662, 1451, 1483
TatI	WGTACW	4 cut(s)	302, 657, 1235, 1392
TfiI	GAWTC	4 cut(s)	11, 719, 1042, 1755
Tru1I	TTAA	3 cut(s)	732, 747, 1427
Tru9I	TTAA	3 cut(s)	732, 747, 1427
TscAI	CASTG	3 cut(s)	75, 189, 1314
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	6 cut(s)	565, 1010, 1295, 1298, 1402, 1675
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	7 cut(s)	211, 375, 418, 468, 515, 1455, 1779
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	3 cut(s)	75, 189, 1314
VpaK11BI	GGWCC	5 cut(s)	118, 262, 827, 899, 1106
VspI	ATTAAT	2 cut(s)	732, 747
XagI	CCTNNNNNAGG	1 cut(s)	1113
XapI	RAATTY	8 cut(s)	178, 380, 445, 487, 529, 580, 684, 1766
XceI	RCATGY	1 cut(s)	1613
XmiI	GTMKAC	1 cut(s)	1200
XspI	CTAG	2 cut(s)	1208, 1233
Zsp2I	ATGCAT	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.