RchiOBHm_Chr5g0011111

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002649
Physical Location & Seq
Reverse (-)
7345106 .. 7345724
619 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29182

Sequence Viewer

Length: 519 bp
ATGGTTGCAGAATCTTGGTTTCGGAATCTGTGGAAGACTAAAAAGAAGCATGAGGCTGCAGGTCCTGAGAAAGCAGTGATTGGAATTTTGGCCTTTGAAGTTGCTAGCTTGATGTCTAAGATGGTCCATCTATGGAGATCTCTAAGTGATAAAAAAGTTGCTAGGCCCAGAGAAAATATATCAAATTCGGAAGCTTGGGAAGAACATTGTACTGGTCCTAGTTTGAAGGGTTTTGAATATGCAATTAGTGATTTGATCTATAATGGTGTTGACCCTTATGGATGGGAGTTTTCATTGAAGATGATGAAAATAAAGGCCAATAGGATGCAGAAATTTATTTCAGTAAATGAAGATTTGCGTGACGAGATGAAAGTTCTTTTGGATCTTGAACAGACCTTGGAAGTCATCACTACCAACTTAGATGGTGAAATTTTGCTCGACTTCCAGCAGAAGGTAGAGTGGAAGAGGCAGGAGGTTGAGAATTTGAAAGAGATCTCTATGTGGAACAACACTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

172

Amino Acids

20.14

Weight (kDa)

5.73

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 29 - 65 1.5e-14 Domain of unknown function (DUF3475)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AclWI GGATC 1 cut(s) 390
AcsI RAATTY 5 cut(s) 84, 184, 332, 429, 481
AfaI GTAC 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 451
AgsI TTSAA 6 cut(s) 98, 226, 236, 298, 389, 487
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 2 cut(s) 108, 194
AluI AGCT 2 cut(s) 108, 194
AlwI GGATC 1 cut(s) 390
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 3 cut(s) 90, 164, 315
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 5 cut(s) 84, 184, 332, 429, 481
AspS9I GGNCC 4 cut(s) 62, 124, 165, 215
AsuHPI GGTGA 1 cut(s) 437
AsuNHI GCTAGC 1 cut(s) 104
AvaII GGWCC 3 cut(s) 62, 124, 215
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 43
BccI CCATC 4 cut(s) 115, 135, 276, 416
BfaI CTAG 3 cut(s) 105, 162, 219
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 50
BglII AGATCT 2 cut(s) 137, 492
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 3 cut(s) 62, 124, 215
BmgT120I GGNCC 4 cut(s) 62, 124, 165, 215
BmsI GCATC 1 cut(s) 315
BmtI GCTAGC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 287, 330
BseLI CCNNNNNNNGG 1 cut(s) 451
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 3 cut(s) 92, 166, 317
BslI CCNNNNNNNGG 1 cut(s) 451
BsnI GGCC 3 cut(s) 92, 166, 317
Bsp143I GATC 4 cut(s) 137, 255, 382, 492
BspANI GGCC 3 cut(s) 92, 166, 317
BspCNI CTCAG 1 cut(s) 58
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 1 cut(s) 390
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 4 cut(s) 137, 255, 382, 492
BssT1I CCWWGG 1 cut(s) 396
Bst6I CTCTTC 1 cut(s) 458
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 4 cut(s) 66, 117, 143, 418
BstF5I GGATG 2 cut(s) 287, 330
BstKTI GATC 4 cut(s) 140, 258, 385, 495
BstMBI GATC 4 cut(s) 137, 255, 382, 492
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 3 cut(s) 137, 382, 492
BstYI RGATCY 3 cut(s) 137, 382, 492
BsuRI GGCC 3 cut(s) 92, 166, 317
BtsCI GGATG 2 cut(s) 287, 330
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 65
Cfr13I GGNCC 4 cut(s) 62, 124, 165, 215
Csp6I GTAC 1 cut(s) 210
CviAII CATG 1 cut(s) 50
CviJI RGCY 6 cut(s) 56, 92, 108, 166, 194, 317
CviKI_1 RGCY 6 cut(s) 56, 92, 108, 166, 194, 317
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 4 cut(s) 66, 117, 143, 418
DpnI GATC 4 cut(s) 139, 257, 384, 494
DpnII GATC 4 cut(s) 137, 255, 382, 492
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 3 cut(s) 62, 124, 215
EcoO109I RGGNCCY 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 1 cut(s) 53
FaiI YATR 7 cut(s) 51, 133, 179, 240, 261, 279, 500
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 294, 337
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 3 cut(s) 105, 162, 219
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 3 cut(s) 92, 166, 317
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 192
HinfI GANTC 2 cut(s) 11, 25
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 24, 190
Hpy188III TCNNGA 2 cut(s) 65, 386
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 220, 445
HpyCH4V TGCA 4 cut(s) 8, 59, 242, 328
HpyF3I CTNAG 4 cut(s) 66, 117, 143, 418
Hsp92II CATG 1 cut(s) 53
Kzo9I GATC 4 cut(s) 137, 255, 382, 492
LpnPI CCDG 6 cut(s) 45, 78, 181, 198, 455, 458
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 315
MaeI CTAG 3 cut(s) 105, 162, 219
MaeIII GTNAC 1 cut(s) 359
MalI GATC 4 cut(s) 139, 257, 384, 494
MboI GATC 4 cut(s) 137, 255, 382, 492
MboII GAAGA 5 cut(s) 46, 212, 310, 362, 475
MflI RGATCY 3 cut(s) 137, 382, 492
MluCI AATT 6 cut(s) 84, 184, 243, 332, 429, 481
MnlI CCTC 3 cut(s) 46, 459, 466
NdeII GATC 4 cut(s) 137, 255, 382, 492
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 359
PfeI GAWTC 2 cut(s) 11, 25
PkrI GCNGC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 62
Psp5II RGGWCCY 1 cut(s) 62
PspPI GGNCC 4 cut(s) 62, 124, 165, 215
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 1 cut(s) 61
PstNI CAGNNNCTG 1 cut(s) 65
PsuI RGATCY 3 cut(s) 137, 382, 492
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 137, 255, 382, 492
Sau96I GGNCC 4 cut(s) 62, 124, 165, 215
SetI ASST 6 cut(s) 64, 110, 196, 398, 456, 477
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 3 cut(s) 62, 124, 215
Sse9I AATT 6 cut(s) 84, 184, 243, 332, 429, 481
SspMI CTAG 3 cut(s) 105, 162, 219
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 1 cut(s) 438
TasI AATT 6 cut(s) 84, 184, 243, 332, 429, 481
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 2 cut(s) 11, 25
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 359
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 359
TspDTI ATGAA 4 cut(s) 282, 320, 363, 383
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 3 cut(s) 62, 124, 215
XapI RAATTY 5 cut(s) 84, 184, 332, 429, 481
XspI CTAG 3 cut(s) 105, 162, 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.