Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002649

Physical Location & Seq

Genomic Coordinates Forward (+)

87012423 .. 87013032

Gene Structure 610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTGAACCTAGCAAAATCTGTGGCTCGGCTTGGGAAGAAACATTGTACTGATCCTAGTTTGAAGGGTTTTGAATATGCAATTAGTGATTTGATCTATAATGGTGTTGACCCTTATGGATGGGAGTTTTCATTGAAGATGATGAAAATAAAGGCCAAGAGGATGCAGAAATTTATTTCAGTAAATGAAGATTTGCGTGACGAGATGAAAGTTCTTTCGGATCTTGAACAGACCTTGGAAGTCATCACTACCAACTTAGATGGTGAAATTTTGCTCGACTTTCAGCAGAAGGTAGAGTGGAAGAGGCAGGAGAGATCTCTATGTGGAACAACACTTAATGATGATGTGGTACTTCTTTTGGCAAGATCTCTCTTCACAACATTCGGTAGGATCAAGAAACTTGAGAAAGATTCTGATCACATTAGTCGTCGTTGTCATTCAGTTTCTTCAGTCCATCCATCTGAGGAAGGCCCAATTGCTGCAATGAAGAGAACCATCAGGAAGGTGTGGAAGTCTAATAGTTTGAGTGAAGTTGGACCTTTCAGAAATTCACCTGTCACCAATTGCTACTTGATCGAGATGGAACACCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

197

Amino Acids

22.65

Weight (kDa)

8.61

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04550 AT5G04550
fragaria_vesca	FvH4_3g07590 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360
malus_domestica	MD02G1244700.v1.1 MD07G1072400.v1.1
prunus_persica	Prupe.2G090600_v2.0.a1
pyrus_communis	pycom02g21060 pycom07g05560
rosa_chinensis	RchiOBHm_Chr1g0334451 RchiOBHm_Chr5g0011101 RchiOBHm_Chr5g0011111
rosa_laevigata	RLG00000029452 RLG00000031810 RLG00000031811
rosa_multiflora	Rmu_ssc0000404.1_g000013
rosa_roxburghii	Rroxscaffold_1G00065290 Rroxscaffold_1G00065300 Rroxscaffold_1G00065310 Rroxscaffold_4G00316830
rosa_rugosa	Rorug01G0113900 Rorug01G0114000 Rorug04G0455200
rosa_samantha	Rh1AG139100 Rh1BG105400 Rh1CG131100 Rh1DG143000 Rh5AG087500 Rh5CG095100 Rh5CG095200 Rh5DG081900
rosa_wichuraiana	Rw0G000190 Rw0G017760 Rw1G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	47, 228, 398
AcsI	RAATTY	3 cut(s)	170, 267, 547
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	2 cut(s)	49, 351
AgsI	TTSAA	4 cut(s)	64, 74, 136, 227
AlwI	GGATC	3 cut(s)	47, 228, 398
AoxI	GGCC	2 cut(s)	153, 469
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	3 cut(s)	170, 267, 547
AspS9I	GGNCC	2 cut(s)	470, 536
AsuHPI	GGTGA	4 cut(s)	16, 275, 543, 550
AvaII	GGWCC	1 cut(s)	536
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	6 cut(s)	114, 254, 462, 466, 503, 574
BclI	TGATCA	1 cut(s)	415
BfaI	CTAG	2 cut(s)	11, 57
BglII	AGATCT	2 cut(s)	314, 365
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme18I	GGWCC	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	470, 536
BmsI	GCATC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	414
BsaJI	CCNNGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	489
Bse8I	GATNNNNATC	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	125, 168, 454
BseJI	GATNNNNATC	1 cut(s)	414
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	453
BseXI	GCAGC	1 cut(s)	466
BshFI	GGCC	2 cut(s)	155, 471
BsnI	GGCC	2 cut(s)	155, 471
Bsp143I	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
BspANI	GGCC	2 cut(s)	155, 471
BspCNI	CTCAG	1 cut(s)	454
BspPI	GGATC	3 cut(s)	47, 228, 398
BsrDI	GCAATG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
BssT1I	CCWWGG	1 cut(s)	234
Bst6I	CTCTTC	3 cut(s)	296, 377, 482
BstDEI	CTNAG	2 cut(s)	256, 462
BstF5I	GGATG	3 cut(s)	125, 168, 454
BstKTI	GATC	8 cut(s)	55, 96, 223, 317, 368, 393, 418, 576
BstMBI	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
BstV1I	GCAGC	1 cut(s)	466
BstX2I	RGATCY	3 cut(s)	220, 314, 365
BstYI	RGATCY	3 cut(s)	220, 314, 365
BsuRI	GGCC	2 cut(s)	155, 471
BtsCI	GGATG	3 cut(s)	125, 168, 454
Cfr13I	GGNCC	2 cut(s)	470, 536
Csp6I	GTAC	2 cut(s)	48, 350
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviJI	RGCY	4 cut(s)	26, 31, 155, 471
CviKI_1	RGCY	4 cut(s)	26, 31, 155, 471
CviQI	GTAC	2 cut(s)	48, 350
DdeI	CTNAG	2 cut(s)	256, 462
DpnI	GATC	8 cut(s)	54, 95, 222, 316, 367, 392, 417, 575
DpnII	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
Eam1104I	CTCTTC	3 cut(s)	296, 377, 482
EarI	CTCTTC	3 cut(s)	296, 377, 482
Eco130I	CCWWGG	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	536
Eco57I	CTGAAG	1 cut(s)	432
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaiI	YATR	4 cut(s)	78, 99, 117, 322
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	3 cut(s)	132, 175, 441
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	2 cut(s)	11, 57
GluI	GCNGC	1 cut(s)	480
HaeIII	GGCC	2 cut(s)	155, 471
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	1 cut(s)	410
HphI	GGTGA	4 cut(s)	16, 275, 543, 550
Hpy166II	GTNNAC	2 cut(s)	7, 109
Hpy188I	TCNGA	4 cut(s)	220, 415, 463, 545
Hpy188III	TCNNGA	4 cut(s)	224, 394, 499, 577
Hpy8I	GTNNAC	2 cut(s)	7, 109
Hpy99I	CGWCG	1 cut(s)	432
HpyAV	CCTTC	4 cut(s)	58, 283, 461, 496
HpyCH4V	TGCA	3 cut(s)	80, 166, 482
HpyF3I	CTNAG	2 cut(s)	256, 462
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
LpnPI	CCDG	3 cut(s)	293, 484, 567
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	11, 57
MaeIII	GTNAC	2 cut(s)	197, 556
MalI	GATC	8 cut(s)	54, 95, 222, 316, 367, 392, 417, 575
MboI	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
MboII	GAAGA	7 cut(s)	49, 148, 200, 313, 364, 438, 499
MfeI	CAATTG	2 cut(s)	474, 562
MflI	RGATCY	3 cut(s)	220, 314, 365
MluCI	AATT	6 cut(s)	81, 170, 267, 474, 547, 562
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	3 cut(s)	153, 297, 457
MseI	TTAA	1 cut(s)	336
MunI	CAATTG	2 cut(s)	474, 562
NdeII	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
NmeAIII	GCCGAG	1 cut(s)	7
NmuCI	GTSAC	2 cut(s)	197, 556
PfeI	GAWTC	1 cut(s)	410
PkrI	GCNGC	1 cut(s)	481
PspPI	GGNCC	2 cut(s)	470, 536
PsuI	RGATCY	3 cut(s)	220, 314, 365
RsaI	GTAC	2 cut(s)	49, 351
RsaNI	GTAC	2 cut(s)	48, 350
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	8 cut(s)	52, 93, 220, 314, 365, 390, 415, 573
Sau96I	GGNCC	2 cut(s)	470, 536
SetI	ASST	6 cut(s)	12, 236, 294, 507, 541, 556
SfaNI	GCATC	1 cut(s)	153
SinI	GGWCC	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	6 cut(s)	81, 170, 267, 474, 547, 562
SspMI	CTAG	2 cut(s)	11, 57
StyI	CCWWGG	1 cut(s)	234
TaqI	TCGA	2 cut(s)	276, 576
TasI	AATT	6 cut(s)	81, 170, 267, 474, 547, 562
TatI	WGTACW	1 cut(s)	47
TfiI	GAWTC	1 cut(s)	410
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TseFI	GTSAC	2 cut(s)	197, 556
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	2 cut(s)	197, 556
TspDTI	ATGAA	5 cut(s)	120, 158, 201, 221, 500
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	3 cut(s)	170, 267, 547
XspI	CTAG	2 cut(s)	11, 57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.