RchiOBHm_Chr1g0334451

Domain of unknown function (DUF3475)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
26666321 .. 26670604
4284 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56317

Sequence Viewer

Length: 1791 bp
ATGGTTGCAGACTCGTGGTTTCGCAGTCTCTGGAGGACAAAAAAGAAGCACGAGGATGGTCCTGAGAAAGCAGTGATTGGAGTTTTGGCCTTTGAAGTAGCAAGCTTGATGTCTAAGCTAGTCCAGTTATGGCAATTTCTGAGTGATAAACAAGTGGCTAGGCTCAGAGAGGAAATTTCAAATTCAGTGGGTATAAGAAAGCTTGTGTCAGATGATGATGATTATATTGGAGGTTTAATATGCATCGAGTTGTTCGAGAATATGGTCCGTGTGGCAAAATCTGTGGACAGGCTTGGGAGGAATTGTACTGATCCTAGTTTGAAGGGTTTTGAGACTGCTATTAGTGATTTGATCAATTACGGTGTTGACACTTATGGATGGCAATTATCATGGAAAAAGATGGAGGTGAAGGCCAAGAAGATGGAGAGGTTCATTTCAATAAATGCAAATTTGTATGAAGAGATGGAAGTTCTTTCAGAGCTTGAACAGACGTTGAGGAGAATGAAAGGCAGTGGTGACTTAGATGGTGTTAATTTGCCGGAGTTTCAAAAGAAGGTAGTGTGGAAGCGGCTGGAGGTGAAGAATTTGAAAGAGGCCTCTCTGTGGAACAGAACTTATGACTATACAGTCCTCCTTTTAGCAAGATCTCTCTTCACAATATTCGGTAGGATCAAGCTTGTCTTTGGAGTTCAACAGATGGTAGATGGTGAATCCAAAGATTCTGATCACATTAGTCGTAGTCATTCAGTGTCTGCAATAATACAGCCTTCAGTCCAACCATCTGAGAACGGTCTTCCAAGATTTGCCTCAGGTCCCCTTGGGAGGGTTGCTGCTACATCAGGGCCAATTTCAAAAACACACAAAACCAACAATTTCTTTTCAGGCCCTCTTGGTGGCTCAAGCACAAAATCAGGCCCTATTTCAGCAAAAAAGAAAGACGTCAACTTCTTTTCAGGTCCTCTTGGGAAGTCAACAAAATCAGGCCCAATTGCTGCAACTAATAGAACCATCAGGAAGTTCTGGAAGTCTCGTGATCACTCAGTCACTAATGGTGAGAAGAAACCACCTACAAAGCCCAATAGGTTGACTCAAGTTGGACCTTTTAAAGGATGCATGATAAGCAATTCACCTGTCACCAATTGCTACTTGAATTCAGATGGTGTTCGTTCAGCAATTCTCAATGTGGCCAGAGATGCCAATGGAGACATTTTGGCTTCTGGCAGCAAACTTCATCCTAGTCCGTCAATCTTCAGTTCCAAGTACAAATTGTTGGATGCTCCACCTGAAACCCTTGGTGCTGCTGCCTTAGCACTGCACTACGCAAATGTTGTTATTGTAATTGAGAAGTTAGTTGCATCTCCTCACTTGATTGGTCTTGACGCGAGAGATGACCTGTACAATATGTTGCCTGCAAGTGTGAGAGCTGCACTAAGGGCAAGGCTAAAGCCATACAGTAAGAGCCTAACTTCATCAGTTTATGATACAGTTCTTGCAGGAGAGTGGAATGAGGCAATGGCGGGGATATTAGAATGGTTGGCACCACTTGCTCATAACATGATAAGATGGCAATCCGAGAGGAGCTTTGAACAGCAAACCTTGGTTTCCAGGACACATGTTCTTCTGGTTCAAACCCTCTACTTTGCAAATCAACAGAAAACAGAAGCGACAATTACAGAGCTTCTTGTTGGTTTGAACTACATCTGGAGGTTTGGCAGAGAAGTCAATGCAAAAGCTCTGTTAGATTGTGATAGCAATAGAACATATGATGAATTTTTGGATATGGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

596

Amino Acids

66.37

Weight (kDa)

9.29

Isoelectric Point (pI)

36.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 28 - 83 2.5e-25 Domain of unknown function (DUF3475)
DUF668 PF05003 430 - 521 2.3e-35 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 626
AatII GACGTC 1 cut(s) 942
AccB1I GGYRCC 1 cut(s) 1537
AccII CGCG 1 cut(s) 1382
AciI CCGC 2 cut(s) 568, 1517
AclWI GGATC 2 cut(s) 305, 677
AcoI YGGCCR 1 cut(s) 1185
AcsI RAATTY 6 cut(s) 174, 181, 448, 583, 1150, 1769
AcuI CTGAAG 2 cut(s) 753, 1234
AcyI GRCGYC 1 cut(s) 939
AfaI GTAC 3 cut(s) 307, 1262, 1397
AfiI CCNNNNNNNGG 5 cut(s) 603, 822, 823, 893, 1106
AflIII ACRYGT 1 cut(s) 1612
AjnI CCWGG 1 cut(s) 1604
AluBI AGCT 9 cut(s) 105, 118, 202, 481, 676, 1424, 1581, 1678, 1733
AluI AGCT 9 cut(s) 105, 118, 202, 481, 676, 1424, 1581, 1678, 1733
Alw26I GTCTC 4 cut(s) 32, 326, 1032, 1197
AlwI GGATC 2 cut(s) 305, 677
AlwNI CAGNNNCTG 2 cut(s) 30, 752
AoxI GGCC 8 cut(s) 87, 411, 594, 842, 883, 913, 982, 1185
ApeKI GCWGC 6 cut(s) 830, 992, 1221, 1298, 1301, 1424
ApoI RAATTY 6 cut(s) 174, 181, 448, 583, 1150, 1769
AspS9I GGNCC 9 cut(s) 59, 265, 812, 842, 884, 914, 956, 983, 1097
AsuHPI GGTGA 7 cut(s) 418, 527, 589, 719, 1064, 1119, 1126
AvaII GGWCC 5 cut(s) 59, 265, 812, 956, 1097
AxyI CCTNAGG 1 cut(s) 808
BalI TGGCCA 1 cut(s) 1187
BanI GGYRCC 1 cut(s) 1537
BauI CACGAG 3 cut(s) 13, 50, 1029
BbsI GAAGAC 1 cut(s) 785
BbvI GCAGC 6 cut(s) 817, 979, 1233, 1285, 1288, 1411
BciT130I CCWGG 1 cut(s) 1606
BclI TGATCA 3 cut(s) 351, 724, 1033
BcoDI GTCTC 4 cut(s) 32, 326, 1032, 1197
BfaI CTAG 4 cut(s) 119, 159, 315, 1236
BglII AGATCT 1 cut(s) 644
BisI GCNGC 7 cut(s) 569, 831, 993, 1222, 1299, 1302, 1425
BlsI GCNGC 7 cut(s) 570, 832, 994, 1223, 1300, 1303, 1426
Bme1390I CCNGG 1 cut(s) 1606
Bme18I GGWCC 5 cut(s) 59, 265, 812, 956, 1097
BmgT120I GGNCC 9 cut(s) 59, 265, 812, 842, 884, 914, 956, 983, 1097
BmiI GGNNCC 2 cut(s) 814, 1539
BmrFI CCNGG 1 cut(s) 1606
BmsI GCATC 5 cut(s) 252, 1100, 1183, 1264, 1364
BpiI GAAGAC 1 cut(s) 785
BpmI CTGGAG 3 cut(s) 52, 593, 1723
Bpu10I CCTNAGC 1 cut(s) 1306
BpuEI CTTGAG 2 cut(s) 883, 1074
BsaBI GATNNNNATC 2 cut(s) 723, 1567
BsaHI GRCGYC 1 cut(s) 939
BsaJI CCNNGG 3 cut(s) 817, 1291, 1596
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 5 cut(s) 603, 822, 823, 893, 1106
Bse1I ACTGG 1 cut(s) 124
Bse21I CCTNAGG 1 cut(s) 808
Bse3DI GCAATG 1 cut(s) 1518
Bse8I GATNNNNATC 2 cut(s) 723, 1567
BseBI CCWGG 1 cut(s) 1606
BseDI CCNNGG 3 cut(s) 817, 1291, 1596
BseGI GGATG 6 cut(s) 61, 383, 1115, 1231, 1279, 1789
BseJI GATNNNNATC 2 cut(s) 723, 1567
BseLI CCNNNNNNNGG 5 cut(s) 603, 822, 823, 893, 1106
BseMI GCAATG 1 cut(s) 1518
BseMII CTCAG 6 cut(s) 54, 131, 178, 774, 822, 1053
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 3 cut(s) 511, 1350, 1591
BseXI GCAGC 6 cut(s) 817, 979, 1233, 1285, 1288, 1411
BsgI GTGCAG 2 cut(s) 1298, 1410
Bsh1236I CGCG 1 cut(s) 1382
BshFI GGCC 8 cut(s) 89, 413, 596, 844, 885, 915, 984, 1187
BshNI GGYRCC 1 cut(s) 1537
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 5 cut(s) 603, 822, 823, 893, 1106
BsmAI GTCTC 4 cut(s) 32, 326, 1032, 1197
BsmFI GGGAC 1 cut(s) 798
BsnI GGCC 8 cut(s) 89, 413, 596, 844, 885, 915, 984, 1187
Bsp1407I TGTACA 1 cut(s) 1395
Bsp143I GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
BspACI CCGC 2 cut(s) 568, 1517
BspANI GGCC 8 cut(s) 89, 413, 596, 844, 885, 915, 984, 1187
BspCNI CTCAG 6 cut(s) 55, 132, 177, 775, 821, 1052
BspFNI CGCG 1 cut(s) 1382
BspLI GGNNCC 2 cut(s) 814, 1539
BspPI GGATC 2 cut(s) 305, 677
BspT107I GGYRCC 1 cut(s) 1537
BsrDI GCAATG 1 cut(s) 1518
BsrGI TGTACA 1 cut(s) 1395
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 817, 1291, 1596
BssMI GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
BssNI GRCGYC 1 cut(s) 939
BssSI CACGAG 3 cut(s) 13, 50, 1029
BssT1I CCWWGG 3 cut(s) 817, 1291, 1596
Bst2BI CACGAG 3 cut(s) 13, 50, 1029
Bst2UI CCWGG 1 cut(s) 1606
Bst4CI ACNGT 5 cut(s) 362, 628, 791, 1454, 1486
Bst6I CTCTTC 2 cut(s) 453, 656
BstACI GRCGYC 1 cut(s) 939
BstAPI GCANNNNNTGC 1 cut(s) 1544
BstAUI TGTACA 1 cut(s) 1395
BstC8I GCNNGC 2 cut(s) 103, 1410
BstENI CCTNNNNNAGG 1 cut(s) 1104
BstF5I GGATG 6 cut(s) 61, 383, 1115, 1231, 1279, 1789
BstFNI CGCG 1 cut(s) 1382
BstKTI GATC 6 cut(s) 313, 354, 647, 672, 727, 1036
BstMAI GTCTC 4 cut(s) 32, 326, 1032, 1197
BstMBI GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
BstMWI GCNNNNNNNGC 5 cut(s) 1119, 1193, 1307, 1433, 1544
BstNI CCWGG 1 cut(s) 1606
BstNSI RCATGY 1 cut(s) 1616
BstSCI CCNGG 1 cut(s) 1604
BstUI CGCG 1 cut(s) 1382
BstV1I GCAGC 6 cut(s) 817, 979, 1233, 1285, 1288, 1411
BstV2I GAAGAC 1 cut(s) 785
BstX2I RGATCY 1 cut(s) 644
BstXI CCANNNNNNTGG 1 cut(s) 421
BstYI RGATCY 1 cut(s) 644
Bsu36I CCTNAGG 1 cut(s) 808
BsuRI GGCC 8 cut(s) 89, 413, 596, 844, 885, 915, 984, 1187
BtsCI GGATG 6 cut(s) 61, 383, 1115, 1231, 1279, 1789
BtsI GCAGTG 3 cut(s) 78, 517, 1310
BtsIMutI CAGTG 5 cut(s) 78, 192, 517, 753, 1310
Cac8I GCNNGC 2 cut(s) 103, 1410
CaiI CAGNNNCTG 2 cut(s) 30, 752
Cfr13I GGNCC 9 cut(s) 59, 265, 812, 842, 884, 914, 956, 983, 1097
CseI GACGC 1 cut(s) 1388
Csp6I GTAC 3 cut(s) 306, 1261, 1396
CspCI CAANNNNNGTGG 4 cut(s) 168, 203, 264, 299
CviAII CATG 4 cut(s) 390, 1114, 1555, 1613
CviQI GTAC 3 cut(s) 306, 1261, 1396
DpnI GATC 6 cut(s) 312, 353, 646, 671, 726, 1035
DpnII GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
DraI TTTAAA 1 cut(s) 1105
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
EaeI YGGCCR 1 cut(s) 1185
Eam1104I CTCTTC 2 cut(s) 453, 656
EarI CTCTTC 2 cut(s) 453, 656
Eco130I CCWWGG 3 cut(s) 817, 1291, 1596
Eco147I AGGCCT 1 cut(s) 596
Eco47I GGWCC 5 cut(s) 59, 265, 812, 956, 1097
Eco57I CTGAAG 2 cut(s) 753, 1234
Eco81I CCTNAGG 1 cut(s) 808
EcoNI CCTNNNNNAGG 1 cut(s) 1104
EcoO109I RGGNCCY 4 cut(s) 812, 884, 914, 956
EcoRI GAATTC 1 cut(s) 1150
EcoRII CCWGG 1 cut(s) 1604
EcoT14I CCWWGG 3 cut(s) 817, 1291, 1596
EcoT22I ATGCAT 2 cut(s) 245, 1115
ErhI CCWWGG 3 cut(s) 817, 1291, 1596
FaeI CATG 4 cut(s) 393, 1117, 1558, 1616
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 1 cut(s) 798
FatI CATG 4 cut(s) 389, 1113, 1554, 1612
FauI CCCGC 1 cut(s) 1510
FauNDI CATATG 1 cut(s) 1762
FbaI TGATCA 3 cut(s) 351, 724, 1033
Fnu4HI GCNGC 7 cut(s) 569, 831, 993, 1222, 1299, 1302, 1425
FokI GGATG 5 cut(s) 68, 390, 1122, 1218, 1286
Fsp4HI GCNGC 7 cut(s) 569, 831, 993, 1222, 1299, 1302, 1425
FspBI CTAG 4 cut(s) 119, 159, 315, 1236
GluI GCNGC 7 cut(s) 569, 831, 993, 1222, 1299, 1302, 1425
GsuI CTGGAG 3 cut(s) 52, 593, 1723
HaeIII GGCC 8 cut(s) 89, 413, 596, 844, 885, 915, 984, 1187
HapII CCGG 1 cut(s) 539
HgaI GACGC 1 cut(s) 1388
Hin1I GRCGYC 1 cut(s) 939
Hin1II CATG 4 cut(s) 393, 1117, 1558, 1616
HincII GTYRAC 4 cut(s) 367, 943, 972, 1086
HindII GTYRAC 4 cut(s) 367, 943, 972, 1086
HindIII AAGCTT 3 cut(s) 103, 200, 674
HinfI GANTC 4 cut(s) 11, 710, 719, 1087
HpaII CCGG 1 cut(s) 539
HphI GGTGA 7 cut(s) 418, 527, 589, 719, 1064, 1119, 1126
Hpy166II GTNNAC 5 cut(s) 286, 367, 943, 972, 1086
Hpy188I TCNGA 8 cut(s) 141, 167, 211, 478, 724, 784, 1156, 1573
Hpy188III TCNNGA 8 cut(s) 31, 62, 256, 1012, 1021, 1031, 1376, 1702
Hpy8I GTNNAC 5 cut(s) 286, 367, 943, 972, 1086
HpyAV CCTTC 4 cut(s) 316, 403, 547, 777
HpyCH4III ACNGT 5 cut(s) 362, 628, 791, 1454, 1486
HpyCH4IV ACGT 2 cut(s) 491, 939
HpyF10VI GCNNNNNNNGC 5 cut(s) 1119, 1193, 1307, 1433, 1544
HpySE526I ACGT 2 cut(s) 491, 939
Hsp92I GRCGYC 1 cut(s) 939
Hsp92II CATG 4 cut(s) 393, 1117, 1558, 1616
Ksp22I TGATCA 3 cut(s) 351, 724, 1033
Kzo9I GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
LmnI GCTCC 2 cut(s) 1282, 1578
Lsp1109I GCAGC 6 cut(s) 817, 979, 1233, 1285, 1288, 1411
LweI GCATC 5 cut(s) 252, 1100, 1183, 1264, 1364
MaeI CTAG 4 cut(s) 119, 159, 315, 1236
MaeII ACGT 2 cut(s) 491, 939
MaeIII GTNAC 3 cut(s) 515, 1042, 1132
MalI GATC 6 cut(s) 312, 353, 646, 671, 726, 1035
MboI GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
MboII GAAGA 8 cut(s) 430, 470, 592, 643, 785, 1069, 1240, 1610
MfeI CAATTG 2 cut(s) 987, 1138
MflI RGATCY 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 1187
MluNI TGGCCA 1 cut(s) 1187
MlyI GAGTC 2 cut(s) 5, 1081
MmeI TCCRAC 3 cut(s) 799, 1075, 1251
Mox20I TGGCCA 1 cut(s) 1187
Mph1103I ATGCAT 2 cut(s) 245, 1115
MscI TGGCCA 1 cut(s) 1187
MseI TTAA 3 cut(s) 236, 531, 1104
MslI CAYNNNNRTG 1 cut(s) 54
Msp20I TGGCCA 1 cut(s) 1187
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 1 cut(s) 1606
MunI CAATTG 2 cut(s) 987, 1138
MvaI CCWGG 1 cut(s) 1606
MvnI CGCG 1 cut(s) 1382
MwoI GCNNNNNNNGC 5 cut(s) 1119, 1193, 1307, 1433, 1544
NdeI CATATG 1 cut(s) 1762
NdeII GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
NlaIII CATG 4 cut(s) 393, 1117, 1558, 1616
NlaIV GGNNCC 2 cut(s) 814, 1539
NmuCI GTSAC 3 cut(s) 515, 1042, 1132
NsiI ATGCAT 2 cut(s) 245, 1115
NspI RCATGY 1 cut(s) 1616
PceI AGGCCT 1 cut(s) 596
PciI ACATGT 1 cut(s) 1612
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PfeI GAWTC 2 cut(s) 710, 719
PfoI TCCNGGA 1 cut(s) 1604
PkrI GCNGC 7 cut(s) 570, 832, 994, 1223, 1300, 1303, 1426
PleI GAGTC 2 cut(s) 5, 1081
PpsI GAGTC 2 cut(s) 5, 1081
PpuMI RGGWCCY 2 cut(s) 812, 956
PscI ACATGT 1 cut(s) 1612
Psp5II RGGWCCY 2 cut(s) 812, 956
Psp6I CCWGG 1 cut(s) 1604
PspGI CCWGG 1 cut(s) 1604
PspN4I GGNNCC 2 cut(s) 814, 1539
PspPI GGNCC 9 cut(s) 59, 265, 812, 842, 884, 914, 956, 983, 1097
PspPPI RGGWCCY 2 cut(s) 812, 956
PstNI CAGNNNCTG 2 cut(s) 30, 752
PsuI RGATCY 1 cut(s) 644
RsaI GTAC 3 cut(s) 307, 1262, 1397
RsaNI GTAC 3 cut(s) 306, 1261, 1396
RseI CAYNNNNRTG 1 cut(s) 54
SaqAI TTAA 3 cut(s) 236, 531, 1104
SatI GCNGC 7 cut(s) 569, 831, 993, 1222, 1299, 1302, 1425
Sau3AI GATC 6 cut(s) 310, 351, 644, 669, 724, 1033
Sau96I GGNCC 9 cut(s) 59, 265, 812, 842, 884, 914, 956, 983, 1097
SchI GAGTC 2 cut(s) 5, 1081
ScrFI CCNGG 1 cut(s) 1606
SfaNI GCATC 5 cut(s) 252, 1100, 1183, 1264, 1364
SinI GGWCC 5 cut(s) 59, 265, 812, 956, 1097
SmiMI CAYNNNNRTG 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 898, 1089
SmoI CTYRAG 2 cut(s) 898, 1089
SseBI AGGCCT 1 cut(s) 596
SsiI CCGC 2 cut(s) 568, 1517
SspI AATATT 1 cut(s) 660
SspMI CTAG 4 cut(s) 119, 159, 315, 1236
StuI AGGCCT 1 cut(s) 596
StyD4I CCNGG 1 cut(s) 1604
StyI CCWWGG 3 cut(s) 817, 1291, 1596
TaaI ACNGT 5 cut(s) 362, 628, 791, 1454, 1486
TaiI ACGT 2 cut(s) 494, 942
TaqI TCGA 2 cut(s) 246, 255
TatI WGTACW 3 cut(s) 305, 1260, 1395
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 2 cut(s) 710, 719
Tru1I TTAA 3 cut(s) 236, 531, 1104
Tru9I TTAA 3 cut(s) 236, 531, 1104
TscAI CASTG 5 cut(s) 78, 192, 517, 753, 1317
TseFI GTSAC 3 cut(s) 515, 1042, 1132
TseI GCWGC 6 cut(s) 830, 992, 1221, 1298, 1301, 1424
Tsp45I GTSAC 3 cut(s) 515, 1042, 1132
TspDTI ATGAA 6 cut(s) 421, 471, 518, 1220, 1458, 1782
TspGWI ACGGA 2 cut(s) 257, 1230
TspRI CASTG 5 cut(s) 78, 192, 517, 753, 1317
VpaK11BI GGWCC 5 cut(s) 59, 265, 812, 956, 1097
XagI CCTNNNNNAGG 1 cut(s) 1104
XapI RAATTY 6 cut(s) 174, 181, 448, 583, 1150, 1769
XceI RCATGY 1 cut(s) 1616
XspI CTAG 4 cut(s) 119, 159, 315, 1236
ZraI GACGTC 1 cut(s) 940
Zsp2I ATGCAT 2 cut(s) 245, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.