RLG00000031811

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002649
Physical Location & Seq
Reverse (-)
8407097 .. 8407707
611 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031811

Sequence Viewer

Length: 453 bp
ATGGTTGCAGAATCTTGGTTTCGGAATCTGTGGAAGACTAAAAAGAAGCATAAGGCTGCAGGTCGTGAGAAAGCAGTGATGGGAATTTTGGCCTTTGAAGTTGCTAGCTTGATGTCTAAGACGGTCCATCTATGGAGATCTCTAAGTGATAAAAAAGTTGCTAGGCCCAGAGAAAATATATCAAATTCGGAATGTTTGATCTATAATGGTGTTGACCCTTATGGATGGGAGTTTTCATTGAAGATGAAGGCCAAGAGGATGCAGAAATTTATTTCAGTAAATGAAGATTTGCGTGACGAGATGAAAGTTCTTTCGGATCTTGAACAGACCTTGGAAGTCATCACTACCAACTTAGATGGTGAAATTTTGCTTGACTCTCAGCAGAAGGTAGAGTGGAAGAGGCAGGAGGTTGAGAATTTGAAAGAGATCTCTCTGTGGAACAACACTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko01100 map00500 map01100
Pfam Domains
Protein Families
DUF4413 Dimer_Tnp_hAT zf-BED

Protein Analysis

151

Amino Acids

17.61

Weight (kDa)

8.92

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 29 - 64 1.2e-14 Domain of unknown function (DUF3475)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 50
AclWI GGATC 1 cut(s) 324
AcsI RAATTY 5 cut(s) 84, 184, 266, 363, 415
AgsI TTSAA 4 cut(s) 98, 241, 323, 421
AluBI AGCT 1 cut(s) 108
AluI AGCT 1 cut(s) 108
AlwI GGATC 1 cut(s) 324
AoxI GGCC 3 cut(s) 90, 164, 249
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 5 cut(s) 84, 184, 266, 363, 415
AspS9I GGNCC 2 cut(s) 124, 165
AsuHPI GGTGA 1 cut(s) 371
AsuNHI GCTAGC 1 cut(s) 104
AvaII GGWCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 43
BccI CCATC 4 cut(s) 73, 135, 219, 350
BfaI CTAG 2 cut(s) 105, 162
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 50
BglII AGATCT 2 cut(s) 137, 426
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 124, 165
BmsI GCATC 1 cut(s) 249
BmtI GCTAGC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 2 cut(s) 230, 264
BseMII CTCAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 3 cut(s) 92, 166, 251
BsnI GGCC 3 cut(s) 92, 166, 251
Bsp143I GATC 4 cut(s) 137, 198, 316, 426
BspANI GGCC 3 cut(s) 92, 166, 251
BspCNI CTCAG 1 cut(s) 391
BspMAI CTGCAG 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 1 cut(s) 324
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 4 cut(s) 137, 198, 316, 426
BssT1I CCWWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 4 cut(s) 117, 143, 352, 378
BstF5I GGATG 2 cut(s) 230, 264
BstKTI GATC 4 cut(s) 140, 201, 319, 429
BstMBI GATC 4 cut(s) 137, 198, 316, 426
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 41
BstX2I RGATCY 3 cut(s) 137, 316, 426
BstYI RGATCY 3 cut(s) 137, 316, 426
BsuRI GGCC 3 cut(s) 92, 166, 251
BtsCI GGATG 2 cut(s) 230, 264
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 124, 165
CviJI RGCY 5 cut(s) 56, 92, 108, 166, 251
CviKI_1 RGCY 5 cut(s) 56, 92, 108, 166, 251
DdeI CTNAG 4 cut(s) 117, 143, 352, 378
DpnI GATC 4 cut(s) 139, 200, 318, 428
DpnII GATC 4 cut(s) 137, 198, 316, 426
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 124
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaiI YATR 5 cut(s) 51, 133, 179, 204, 222
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 237, 271
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 105, 162
GluI GCNGC 1 cut(s) 57
HaeIII GGCC 3 cut(s) 92, 166, 251
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 3 cut(s) 11, 25, 374
HphI GGTGA 1 cut(s) 371
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 24, 190, 316
Hpy188III TCNNGA 2 cut(s) 65, 320
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 241, 379
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 8, 59, 262
HpyF3I CTNAG 4 cut(s) 117, 143, 352, 378
Kzo9I GATC 4 cut(s) 137, 198, 316, 426
LpnPI CCDG 3 cut(s) 45, 181, 389
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 105, 162
MaeIII GTNAC 1 cut(s) 293
MalI GATC 4 cut(s) 139, 200, 318, 428
MboI GATC 4 cut(s) 137, 198, 316, 426
MboII GAAGA 4 cut(s) 46, 253, 296, 409
MflI RGATCY 3 cut(s) 137, 316, 426
MluCI AATT 5 cut(s) 84, 184, 266, 363, 415
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 3 cut(s) 249, 393, 400
NdeII GATC 4 cut(s) 137, 198, 316, 426
NheI GCTAGC 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 293
PfeI GAWTC 2 cut(s) 11, 25
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 368
PpsI GAGTC 1 cut(s) 368
PspPI GGNCC 2 cut(s) 124, 165
PstI CTGCAG 1 cut(s) 61
PsuI RGATCY 3 cut(s) 137, 316, 426
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 4 cut(s) 137, 198, 316, 426
Sau96I GGNCC 2 cut(s) 124, 165
SchI GAGTC 1 cut(s) 368
SetI ASST 5 cut(s) 64, 110, 332, 390, 411
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 124
Sse9I AATT 5 cut(s) 84, 184, 266, 363, 415
SspMI CTAG 2 cut(s) 105, 162
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 124
TasI AATT 5 cut(s) 84, 184, 266, 363, 415
TfiI GAWTC 2 cut(s) 11, 25
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 4 cut(s) 225, 260, 297, 317
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 5 cut(s) 84, 184, 266, 363, 415
XspI CTAG 2 cut(s) 105, 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.