Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002649

Physical Location & Seq

Genomic Coordinates Reverse (-)

60910591 .. 60913684

Gene Structure 3094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0455200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCCATGACTTGGAAGCTCCTGAAGCAACTCCGACCGCCACCGTACACCGCCACCGCCTCTGCCTCTGCGAGCCTCCACCGCCCTCGATTTCTCAACTTCCATAATGCCACTCGGCTCTTCTCCGATGCGCCTCCGCCCTCCGGAGAGCCTCCTCCGTCGATTCCACCGCCTCAAAACCCTCACTCTCCCTCGCCGTCGTCTCTGAACCAGGCAGAGCTCGCTAAGTTCGCCGCCATTGCCGGAACCTGGAGGGATCCATTATCTGCTAGGCCCTTTGAAGGGCTCAAGTTTCTTGATGTTGGCTGTGGTGGTGGAATTCTGTCTGAGCCTTTAGCACGGATGGGAGCTTCTGTAACGGGAGTTGATGCTGTTGATAAAAATATCAAGATAGCTCGCCTTCATGCTGTAATTGAGCACGTGGCAAATCCTGCTGAGTTCTGCAAATCTCTGTCTGCCTTAACTGTTCCTGATGGAGCTACCGTGATTTCAACTATTAACCGTTCTATGAGAGCATATGCTACTGCAATTGTTGCTGCCGAGTATCTCCTCCATTGGCTTCCTAAAGGTACACATCAATGGTCCAGTTTCCATACTCCTGAAGAACTAGTCTTGTTCCTGGAGCGTGCTTCTATTTCGGTCCAAGAGATGGCTGGATTTGCATACAACCCTTTGACAGGAAGATGGTTTATATCTGACGATGTTGGTGTAAACTTTATCGCTTATGGTACCAAAACAGAAACAGTCACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

251

Amino Acids

27.14

Weight (kDa)

7.85

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	84 - 210	1.8e-13	Methyltransferase domain
Methyltransf_11	PF08241	99 - 157	3e-07	Methyltransferase domain
Methyltransf_25	PF13649	99 - 160	2.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04550 AT5G04550
fragaria_vesca	FvH4_3g07590 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360
malus_domestica	MD02G1244700.v1.1 MD07G1072400.v1.1
prunus_persica	Prupe.2G090600_v2.0.a1
pyrus_communis	pycom02g21060 pycom07g05560
rosa_chinensis	RchiOBHm_Chr1g0334451 RchiOBHm_Chr5g0011101 RchiOBHm_Chr5g0011111
rosa_laevigata	RLG00000029452 RLG00000031810 RLG00000031811
rosa_multiflora	Rmu_ssc0000404.1_g000013
rosa_roxburghii	Rroxscaffold_1G00065290 Rroxscaffold_1G00065300 Rroxscaffold_1G00065310 Rroxscaffold_4G00316830
rosa_rugosa	Rorug01G0113900 Rorug01G0114000 Rorug04G0455200
rosa_samantha	Rh1AG139100 Rh1BG105400 Rh1CG131100 Rh1DG143000 Rh5AG087500 Rh5CG095100 Rh5CG095200 Rh5DG081900
rosa_wichuraiana	Rw0G000190 Rw0G017760 Rw1G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	728
AccB1I	GGYRCC	1 cut(s)	728
AccB7I	CCANNNNNTGG	2 cut(s)	12, 649
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
AclWI	GGATC	2 cut(s)	251, 264
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	318
AcuI	CTGAAG	2 cut(s)	44, 621
AcvI	CACGTG	1 cut(s)	421
AfaI	GTAC	3 cut(s)	47, 571, 730
AfiI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 281, 282, 649, 677
AgsI	TTSAA	2 cut(s)	281, 492
AhlI	ACTAGT	1 cut(s)	607
AjnI	CCWGG	3 cut(s)	210, 248, 618
AluBI	AGCT	5 cut(s)	19, 220, 350, 395, 479
AluI	AGCT	5 cut(s)	19, 220, 350, 395, 479
Alw21I	GWGCWC	2 cut(s)	222, 420
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	251, 264
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	2 cut(s)	3, 272
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	318
Asp718I	GGTACC	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	133
AspS9I	GGNCC	3 cut(s)	273, 582, 640
AvaII	GGWCC	2 cut(s)	582, 640
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	728
BanII	GRGCYC	2 cut(s)	222, 288
BbrPI	CACGTG	1 cut(s)	421
Bbv12I	GWGCWC	2 cut(s)	222, 420
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	4 cut(s)	337, 467, 643, 678
BceAI	ACGGC	1 cut(s)	181
BciT130I	CCWGG	3 cut(s)	212, 250, 620
BcoDI	GTCTC	1 cut(s)	207
BcuI	ACTAGT	1 cut(s)	607
BfaI	CTAG	2 cut(s)	270, 608
BisI	GCNGC	2 cut(s)	234, 537
BlsI	GCNGC	2 cut(s)	235, 538
Bme1390I	CCNGG	3 cut(s)	212, 250, 620
Bme18I	GGWCC	2 cut(s)	582, 640
BmgT120I	GGNCC	3 cut(s)	273, 582, 640
BmiI	GGNNCC	3 cut(s)	247, 258, 730
BmrFI	CCNGG	3 cut(s)	212, 250, 620
BmsI	GCATC	2 cut(s)	118, 358
BpmI	CTGGAG	2 cut(s)	271, 641
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	421
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	4 cut(s)	339, 369, 468, 498
Bsc4I	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 281, 282, 649, 677
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	237
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	212, 250, 620
BseGI	GGATG	1 cut(s)	348
BseLI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 281, 282, 649, 677
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	318, 426
BseNI	ACTGG	1 cut(s)	585
BseRI	GAGGAG	2 cut(s)	144, 539
BseXI	GCAGC	1 cut(s)	523
Bsh1285I	CGRYCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	5, 274
BshNI	GGYRCC	1 cut(s)	728
BsiEI	CGRYCG	1 cut(s)	38
BsiHKAI	GWGCWC	2 cut(s)	222, 420
BsiSI	CCGG	2 cut(s)	144, 243
BslI	CCNNNNNNNGG	7 cut(s)	12, 143, 249, 281, 282, 649, 677
BsmAI	GTCTC	1 cut(s)	207
BsmBI	CGTCTC	1 cut(s)	207
BsnI	GGCC	2 cut(s)	5, 274
Bsp1286I	GDGCHC	3 cut(s)	222, 288, 420
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
BspANI	GGCC	2 cut(s)	5, 274
BspCNI	CTCAG	2 cut(s)	319, 427
BspEI	TCCGGA	1 cut(s)	143
BspLI	GGNNCC	3 cut(s)	247, 258, 730
BspPI	GGATC	2 cut(s)	251, 264
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	585
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	3 cut(s)	212, 250, 620
Bst4CI	ACNGT	5 cut(s)	45, 466, 484, 503, 745
Bst6I	CTCTTC	1 cut(s)	125
BstAPI	GCANNNNNTGC	2 cut(s)	431, 533
BstBAI	YACGTR	1 cut(s)	421
BstC8I	GCNNGC	4 cut(s)	73, 222, 397, 627
BstDEI	CTNAG	3 cut(s)	225, 327, 435
BstENI	CCTNNNNNAGG	1 cut(s)	675
BstF5I	GGATG	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	1 cut(s)	38
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 81, 221, 230, 239, 431, 533, 659
BstNI	CCWGG	3 cut(s)	212, 250, 620
BstSCI	CCNGG	3 cut(s)	210, 248, 618
BstV1I	GCAGC	1 cut(s)	523
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	2 cut(s)	5, 274
BtsCI	GGATG	1 cut(s)	348
Cac8I	GCNNGC	4 cut(s)	73, 222, 397, 627
CfoI	GCGC	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	273, 582, 640
Csp6I	GTAC	3 cut(s)	46, 570, 729
CviAII	CATG	2 cut(s)	7, 404
CviQI	GTAC	3 cut(s)	46, 570, 729
DdeI	CTNAG	3 cut(s)	225, 327, 435
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	220
Eco24I	GRGCYC	2 cut(s)	222, 288
Eco47I	GGWCC	2 cut(s)	582, 640
Eco53kI	GAGCTC	1 cut(s)	220
Eco57I	CTGAAG	2 cut(s)	44, 621
Eco72I	CACGTG	1 cut(s)	421
EcoICRI	GAGCTC	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	675
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRI	GAATTC	1 cut(s)	318
EcoRII	CCWGG	3 cut(s)	210, 248, 618
EcoT38I	GRGCYC	2 cut(s)	222, 288
Esp3I	CGTCTC	1 cut(s)	207
FaeI	CATG	2 cut(s)	10, 407
FatI	CATG	2 cut(s)	6, 403
FauNDI	CATATG	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	234, 537
FokI	GGATG	1 cut(s)	355
FriOI	GRGCYC	2 cut(s)	222, 288
Fsp4HI	GCNGC	2 cut(s)	234, 537
FspBI	CTAG	2 cut(s)	270, 608
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	234, 537
GsuI	CTGGAG	2 cut(s)	271, 641
HaeIII	GGCC	2 cut(s)	5, 274
HapII	CCGG	2 cut(s)	144, 243
HhaI	GCGC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	10, 407
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	144, 243
Hpy166II	GTNNAC	3 cut(s)	48, 572, 712
Hpy188I	TCNGA	5 cut(s)	35, 127, 207, 328, 697
Hpy188III	TCNNGA	6 cut(s)	22, 144, 296, 388, 470, 599
Hpy8I	GTNNAC	3 cut(s)	48, 572, 712
Hpy99I	CGWCG	2 cut(s)	163, 202
HpyAV	CCTTC	2 cut(s)	275, 410
HpyCH4III	ACNGT	5 cut(s)	45, 466, 484, 503, 745
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	3 cut(s)	444, 527, 662
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 81, 221, 230, 239, 431, 533, 659
HpyF3I	CTNAG	3 cut(s)	225, 327, 435
HpySE526I	ACGT	1 cut(s)	420
Hsp92II	CATG	2 cut(s)	10, 407
HspAI	GCGC	1 cut(s)	131
Kpn2I	TCCGGA	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	732
Kzo9I	GATC	1 cut(s)	256
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	4 cut(s)	24, 347, 476, 622
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	2 cut(s)	118, 358
MaeI	CTAG	2 cut(s)	270, 608
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	355, 745
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	3 cut(s)	112, 614, 693
MfeI	CAATTG	1 cut(s)	528
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	3 cut(s)	222, 288, 420
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	318, 411, 528
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	58
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	461, 498
MslI	CAYNNNNRTG	1 cut(s)	577
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	144, 243
MspR9I	CCNGG	3 cut(s)	212, 250, 620
MunI	CAATTG	1 cut(s)	528
MvaI	CCWGG	3 cut(s)	212, 250, 620
MwoI	GCNNNNNNNGC	8 cut(s)	25, 81, 221, 230, 239, 431, 533, 659
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	10, 407
NlaIV	GGNNCC	3 cut(s)	247, 258, 730
NmeAIII	GCCGAG	2 cut(s)	94, 565
NmuCI	GTSAC	1 cut(s)	745
PciSI	GCTCTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	163
PflMI	CCANNNNNTGG	2 cut(s)	12, 649
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	2 cut(s)	235, 538
PmaCI	CACGTG	1 cut(s)	421
PmlI	CACGTG	1 cut(s)	421
Ppu21I	YACGTR	1 cut(s)	421
Psp124BI	GAGCTC	1 cut(s)	222
Psp6I	CCWGG	3 cut(s)	210, 248, 618
PspCI	CACGTG	1 cut(s)	421
PspGI	CCWGG	3 cut(s)	210, 248, 618
PspN4I	GGNNCC	3 cut(s)	247, 258, 730
PspPI	GGNCC	3 cut(s)	273, 582, 640
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	3 cut(s)	47, 571, 730
RsaNI	GTAC	3 cut(s)	46, 570, 729
RseI	CAYNNNNRTG	1 cut(s)	577
SacI	GAGCTC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	461, 498
SatI	GCNGC	2 cut(s)	234, 537
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	3 cut(s)	273, 582, 640
ScrFI	CCNGG	3 cut(s)	212, 250, 620
SduI	GDGCHC	3 cut(s)	222, 288, 420
SetI	ASST	8 cut(s)	21, 222, 251, 352, 397, 423, 481, 571
SfaNI	GCATC	2 cut(s)	118, 358
SinI	GGWCC	2 cut(s)	582, 640
SmiMI	CAYNNNNRTG	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	607
Sse9I	AATT	3 cut(s)	318, 411, 528
SsiI	CCGC	7 cut(s)	38, 51, 57, 82, 137, 170, 234
SspMI	CTAG	2 cut(s)	270, 608
SstI	GAGCTC	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	210, 248, 618
TaaI	ACNGT	5 cut(s)	45, 466, 484, 503, 745
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	2 cut(s)	88, 161
TaqII	GACCGA	1 cut(s)	628
TasI	AATT	3 cut(s)	318, 411, 528
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	461, 498
Tru9I	TTAA	2 cut(s)	461, 498
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	1 cut(s)	392
TspGWI	ACGGA	2 cut(s)	147, 355
Van91I	CCANNNNNTGG	2 cut(s)	12, 649
VpaK11BI	GGWCC	2 cut(s)	582, 640
XagI	CCTNNNNNAGG	1 cut(s)	675
XapI	RAATTY	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	650
XspI	CTAG	2 cut(s)	270, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.