protein dimerization activity
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G04550 AT5G04550 |
| fragaria_vesca | FvH4_3g07590 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 |
| malus_domestica | MD02G1244700.v1.1 MD07G1072400.v1.1 |
| prunus_persica | Prupe.2G090600_v2.0.a1 |
| pyrus_communis | pycom02g21060 pycom07g05560 |
| rosa_chinensis | RchiOBHm_Chr1g0334451 RchiOBHm_Chr5g0011101 RchiOBHm_Chr5g0011111 |
| rosa_laevigata | RLG00000029452 RLG00000031810 RLG00000031811 |
| rosa_multiflora | Rmu_ssc0000404.1_g000013 |
| rosa_roxburghii | Rroxscaffold_1G00065290 Rroxscaffold_1G00065300 Rroxscaffold_1G00065310 Rroxscaffold_4G00316830 |
| rosa_rugosa | Rorug01G0113900 Rorug01G0114000 Rorug04G0455200 |
| rosa_samantha | Rh1AG139100 Rh1BG105400 Rh1CG131100 Rh1DG143000 Rh5AG087500 Rh5CG095100 Rh5CG095200 Rh5DG081900 |
| rosa_wichuraiana | Rw0G000190 Rw0G017760 Rw1G011470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 267 |
| AcsI | RAATTY | 3 cut(s) | 209, 306, 358 |
| AfaI | GTAC | 1 cut(s) | 88 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 328 |
| AgsI | TTSAA | 5 cut(s) | 103, 113, 175, 266, 364 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 24, 56, 239, 271 |
| AlwI | GGATC | 1 cut(s) | 267 |
| AoxI | GGCC | 1 cut(s) | 192 |
| ApoI | RAATTY | 3 cut(s) | 209, 306, 358 |
| AspS9I | GGNCC | 1 cut(s) | 92 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| AvaII | GGWCC | 1 cut(s) | 92 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| BccI | CCATC | 2 cut(s) | 153, 293 |
| BfaI | CTAG | 1 cut(s) | 96 |
| BglII | AGATCT | 1 cut(s) | 369 |
| Bme18I | GGWCC | 1 cut(s) | 92 |
| BmgT120I | GGNCC | 1 cut(s) | 92 |
| BmsI | GCATC | 1 cut(s) | 192 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| BsaJI | CCNNGG | 1 cut(s) | 273 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 328 |
| Bse1I | ACTGG | 1 cut(s) | 94 |
| BseDI | CCNNGG | 1 cut(s) | 273 |
| BseGI | GGATG | 2 cut(s) | 164, 207 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BseNI | ACTGG | 1 cut(s) | 94 |
| BshFI | GGCC | 1 cut(s) | 194 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 328 |
| BsnI | GGCC | 1 cut(s) | 194 |
| Bsp143I | GATC | 3 cut(s) | 132, 259, 369 |
| BspANI | GGCC | 1 cut(s) | 194 |
| BspHI | TCATGA | 1 cut(s) | 43 |
| BspPI | GGATC | 1 cut(s) | 267 |
| BsrI | ACTGG | 1 cut(s) | 94 |
| BssECI | CCNNGG | 1 cut(s) | 273 |
| BssMI | GATC | 3 cut(s) | 132, 259, 369 |
| BssT1I | CCWWGG | 1 cut(s) | 273 |
| Bst6I | CTCTTC | 2 cut(s) | 45, 335 |
| BstDEI | CTNAG | 1 cut(s) | 295 |
| BstF5I | GGATG | 2 cut(s) | 164, 207 |
| BstKTI | GATC | 3 cut(s) | 135, 262, 372 |
| BstMBI | GATC | 3 cut(s) | 132, 259, 369 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| BstX2I | RGATCY | 2 cut(s) | 259, 369 |
| BstYI | RGATCY | 2 cut(s) | 259, 369 |
| BsuRI | GGCC | 1 cut(s) | 194 |
| BtsCI | GGATG | 2 cut(s) | 164, 207 |
| CciI | TCATGA | 1 cut(s) | 43 |
| Cfr13I | GGNCC | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 87 |
| CviAII | CATG | 2 cut(s) | 16, 44 |
| CviJI | RGCY | 3 cut(s) | 29, 71, 194 |
| CviKI_1 | RGCY | 3 cut(s) | 29, 71, 194 |
| CviQI | GTAC | 1 cut(s) | 87 |
| DdeI | CTNAG | 1 cut(s) | 295 |
| DpnI | GATC | 3 cut(s) | 134, 261, 371 |
| DpnII | GATC | 3 cut(s) | 132, 259, 369 |
| Eam1104I | CTCTTC | 2 cut(s) | 45, 335 |
| EarI | CTCTTC | 2 cut(s) | 45, 335 |
| Eco130I | CCWWGG | 1 cut(s) | 273 |
| Eco47I | GGWCC | 1 cut(s) | 92 |
| EcoT14I | CCWWGG | 1 cut(s) | 273 |
| ErhI | CCWWGG | 1 cut(s) | 273 |
| FaeI | CATG | 2 cut(s) | 19, 47 |
| FaiI | YATR | 6 cut(s) | 17, 45, 117, 138, 156, 377 |
| FatI | CATG | 2 cut(s) | 15, 43 |
| FokI | GGATG | 2 cut(s) | 171, 214 |
| FspBI | CTAG | 1 cut(s) | 96 |
| HaeIII | GGCC | 1 cut(s) | 194 |
| Hin1II | CATG | 2 cut(s) | 19, 47 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 263 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyAV | CCTTC | 2 cut(s) | 97, 322 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 205 |
| HpyF3I | CTNAG | 1 cut(s) | 295 |
| Hsp92II | CATG | 2 cut(s) | 19, 47 |
| Kzo9I | GATC | 3 cut(s) | 132, 259, 369 |
| LpnPI | CCDG | 3 cut(s) | 75, 332, 335 |
| LweI | GCATC | 1 cut(s) | 192 |
| MaeI | CTAG | 1 cut(s) | 96 |
| MaeIII | GTNAC | 1 cut(s) | 236 |
| MalI | GATC | 3 cut(s) | 134, 261, 371 |
| MboI | GATC | 3 cut(s) | 132, 259, 369 |
| MboII | GAAGA | 7 cut(s) | 16, 22, 32, 89, 187, 239, 352 |
| MflI | RGATCY | 2 cut(s) | 259, 369 |
| MluCI | AATT | 4 cut(s) | 120, 209, 306, 358 |
| MnlI | CCTC | 2 cut(s) | 336, 343 |
| NdeII | GATC | 3 cut(s) | 132, 259, 369 |
| NlaIII | CATG | 2 cut(s) | 19, 47 |
| NmuCI | GTSAC | 1 cut(s) | 236 |
| PagI | TCATGA | 1 cut(s) | 43 |
| PspPI | GGNCC | 1 cut(s) | 92 |
| PsuI | RGATCY | 2 cut(s) | 259, 369 |
| RsaI | GTAC | 1 cut(s) | 88 |
| RsaNI | GTAC | 1 cut(s) | 87 |
| Sau3AI | GATC | 3 cut(s) | 132, 259, 369 |
| Sau96I | GGNCC | 1 cut(s) | 92 |
| SetI | ASST | 3 cut(s) | 275, 333, 354 |
| SfaNI | GCATC | 1 cut(s) | 192 |
| SinI | GGWCC | 1 cut(s) | 92 |
| Sse9I | AATT | 4 cut(s) | 120, 209, 306, 358 |
| SspMI | CTAG | 1 cut(s) | 96 |
| StyI | CCWWGG | 1 cut(s) | 273 |
| TaqI | TCGA | 1 cut(s) | 315 |
| TasI | AATT | 4 cut(s) | 120, 209, 306, 358 |
| TatI | WGTACW | 1 cut(s) | 86 |
| TseFI | GTSAC | 1 cut(s) | 236 |
| Tsp45I | GTSAC | 1 cut(s) | 236 |
| TspDTI | ATGAA | 7 cut(s) | 17, 23, 32, 159, 197, 240, 260 |
| VpaK11BI | GGWCC | 1 cut(s) | 92 |
| XapI | RAATTY | 3 cut(s) | 209, 306, 358 |
| XspI | CTAG | 1 cut(s) | 96 |