Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00005

Orthogroup ID

OG0002649

Physical Location & Seq

Genomic Coordinates Reverse (-)

58858 .. 61293

Gene Structure 2436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGTTGCAGAATCTTGGTTTCGGAATCTGTGGAAGACTAAAAAGAAGCATGAGGCTGAAGGTCCTGAGAAAGCAGTGATTGGAATTTTGGCCTTTGAAGTTGCTAGCTTGATGTCTAAGATGGTCCATCTACGGAGATCTCTAAGTGGTAAAAAATATAAAAAAGCTTTGGCAGATGATGATGATTTCATTGTAGGTAAAATATACATTGAATTGTTTGAGAATATGGTGAACCTAGAAAAATCTGTGGCTATGCTTGGGAAGAAACATTGTACTGGTCCTAGTTTGAAGGGTTTTGAATATGCAATTAGTGATTTGATCTATAATGGTGTTGACCCTTATGGATGGGAGTTTTCATTGAAGATGATGAAAATAAAGGCCAAGAGGATGCAGAAATTTATTTCAGTAAATGAAGATTTGTGTGACGAGATGAAAGTTCTTTCGGATCTTGAACAGACCTTGGAAGTCATCACTACCAACTTAGATGGTGAAATTTTGCTTCCAGCAGAAGGTAGAAGATCTCTATGTGGAACAACACTTATTGATGATGTGGCACTTCTTTTGGCAAGATCTCTCTTCACAACATTCGGTAGGATCAAGAAACTTGAGAAAGATTCTGATCACATTAGTCGTCGTTGTCATTCAGTTTCTTCAGTCCATCCATCTGAGGAAGGCCCAATTGCTGCAATGAAGAGAACCATCAGGAAGGTGTGGAAGTGTAATAGTTTGAGTGAAGTTGAACCTTTCAGAAATTCACCTGTCACCAATTGCTACTTGAGATGGAACACCATTAGTTCAGCCACTGCACTATGCAAATGTGGTTATCGATCGAAATTGAGAAGTCAGGTACAGTTTCCTAGCTTGATGGTTTTTTACAGAGATAACCTGTACAAAATGTTGCCTGCAACAGTGAGAAATGCACTAAGGAAGAGGCTAGAGCCGCACAACAGGAAGAGCTCGACTTCATTAGTTTATGATGAAGGTGTTTCAGGAGAGTGGAATGAGGCAGTCTCAGGAATATTAGAATGGTTGGCGCCACTTTCTCATAATATGATAAGCTGGAAACCCAAGAACAGACATATGCTTCTGGTACAAACCCTGTACTTTGCAAATCAACAAAAGACAGAAGCAACAATTACTGAACTTCTAGTTGGTTTGCATTACACGTGGAAATTTAGATATCGTGTTCTGAGCACTCCAAAGCAACTTCTTTCCCCTCAAATTTCTGGTTTGCAAAAGGTTCAGGACCCAGACGGAGAGTCAAATACCGCTGCTGTGGATGCAAAACAGATCGCTACTTCAATTGTGAACTTGTTAATTTACGTAGAGGAAATGAAGTTTGGTGATATTTCGATTTGTCAAAAGAATATAACAAAAACTTGTTTCTATATCCAAATCTGCTTACAAGACTATATGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3475 DUF668

Protein Analysis

473

Amino Acids

54.03

Weight (kDa)

9.12

Isoelectric Point (pI)

48.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3475	PF11961	29 - 54	6.6e-08	Domain of unknown function (DUF3475)
DUF668	PF05003	292 - 352	2.5e-15	Protein of unknown function (DUF668)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04550 AT5G04550
fragaria_vesca	FvH4_3g07590 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360 FvH4_7g06360
malus_domestica	MD02G1244700.v1.1 MD07G1072400.v1.1
prunus_persica	Prupe.2G090600_v2.0.a1
pyrus_communis	pycom02g21060 pycom07g05560
rosa_chinensis	RchiOBHm_Chr1g0334451 RchiOBHm_Chr5g0011101 RchiOBHm_Chr5g0011111
rosa_laevigata	RLG00000029452 RLG00000031810 RLG00000031811
rosa_multiflora	Rmu_ssc0000404.1_g000013
rosa_roxburghii	Rroxscaffold_1G00065290 Rroxscaffold_1G00065300 Rroxscaffold_1G00065310 Rroxscaffold_4G00316830
rosa_rugosa	Rorug01G0113900 Rorug01G0114000 Rorug04G0455200
rosa_samantha	Rh1AG139100 Rh1BG105400 Rh1CG131100 Rh1DG143000 Rh5AG087500 Rh5CG095100 Rh5CG095200 Rh5DG081900
rosa_wichuraiana	Rw0G000190 Rw0G017760 Rw1G011470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1033
AciI	CCGC	2 cut(s)	941, 1269
AclWI	GGATC	2 cut(s)	453, 602
AcsI	RAATTY	6 cut(s)	84, 395, 492, 751, 1172, 1221
AcuI	CTGAAG	2 cut(s)	78, 636
AcvI	CACGTG	1 cut(s)	1167
AcyI	GRCGYC	1 cut(s)	1034
AfaI	GTAC	5 cut(s)	274, 849, 890, 1092, 1103
AfiI	CCNNNNNNNGG	1 cut(s)	509
AflIII	ACRYGT	1 cut(s)	1164
AgsI	TTSAA	8 cut(s)	98, 212, 289, 299, 361, 452, 740, 1302
AhdI	GACNNNNNGTC	1 cut(s)	1258
AjuI	GAANNNNNNNTTGG	4 cut(s)	1134, 1166, 1323, 1355
AluBI	AGCT	5 cut(s)	108, 167, 861, 957, 1059
AluI	AGCT	5 cut(s)	108, 167, 861, 957, 1059
Alw21I	GWGCWC	2 cut(s)	959, 1196
Alw26I	GTCTC	1 cut(s)	1015
AlwI	GGATC	2 cut(s)	453, 602
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	3 cut(s)	90, 378, 673
ApeKI	GCWGC	2 cut(s)	683, 1271
ApoI	RAATTY	6 cut(s)	84, 395, 492, 751, 1172, 1221
AspLEI	GCGC	1 cut(s)	1036
AspS9I	GGNCC	5 cut(s)	62, 124, 278, 674, 1246
AsuHPI	GGTGA	5 cut(s)	241, 500, 747, 754, 1355
AsuNHI	GCTAGC	1 cut(s)	104
AvaII	GGWCC	4 cut(s)	62, 124, 278, 1246
BanI	GGYRCC	1 cut(s)	1033
BanII	GRGCYC	1 cut(s)	959
BbrPI	CACGTG	1 cut(s)	1167
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	959, 1196
BbvI	GCAGC	2 cut(s)	670, 1258
BccI	CCATC	9 cut(s)	115, 135, 339, 479, 666, 670, 707, 774, 859
BclI	TGATCA	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	1015
BfaI	CTAG	6 cut(s)	105, 236, 282, 858, 935, 1148
BfoI	RGCGCY	1 cut(s)	1037
BglII	AGATCT	3 cut(s)	137, 518, 569
BisI	GCNGC	3 cut(s)	684, 941, 1272
BlsI	GCNGC	3 cut(s)	685, 942, 1273
Bme18I	GGWCC	4 cut(s)	62, 124, 278, 1246
BmeRI	GACNNNNNGTC	1 cut(s)	1258
BmgT120I	GGNCC	5 cut(s)	62, 124, 278, 674, 1246
BmiI	GGNNCC	2 cut(s)	1035, 1248
BmsI	GCATC	2 cut(s)	378, 1270
BmtI	GCTAGC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	41
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
BpuEI	CTTGAG	2 cut(s)	626, 796
Bsa29I	ATCGAT	1 cut(s)	826
BsaAI	YACGTR	2 cut(s)	1167, 1324
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	1034
BsaJI	CCNNGG	1 cut(s)	459
Bsc4I	CCNNNNNNNGG	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	693
Bse8I	GATNNNNATC	1 cut(s)	618
BseCI	ATCGAT	1 cut(s)	826
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	4 cut(s)	350, 393, 658, 1285
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	1 cut(s)	509
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	4 cut(s)	57, 657, 1026, 1181
BseNI	ACTGG	1 cut(s)	280
BseXI	GCAGC	2 cut(s)	670, 1258
BsgI	GTGCAG	1 cut(s)	789
Bsh1285I	CGRYCG	1 cut(s)	830
BshFI	GGCC	3 cut(s)	92, 380, 675
BshNI	GGYRCC	1 cut(s)	1033
BshVI	ATCGAT	1 cut(s)	826
BsiEI	CGRYCG	1 cut(s)	830
BsiHKAI	GWGCWC	2 cut(s)	959, 1196
BslI	CCNNNNNNNGG	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	1015
BsnI	GGCC	3 cut(s)	92, 380, 675
Bsp1286I	GDGCHC	2 cut(s)	959, 1196
Bsp1407I	TGTACA	1 cut(s)	888
Bsp143I	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
BspACI	CCGC	2 cut(s)	941, 1269
BspANI	GGCC	3 cut(s)	92, 380, 675
BspCNI	CTCAG	4 cut(s)	58, 658, 1025, 1182
BspDI	ATCGAT	1 cut(s)	826
BspLI	GGNNCC	2 cut(s)	1035, 1248
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	2 cut(s)	453, 602
BspQI	GCTCTTC	1 cut(s)	947
BspT107I	GGYRCC	1 cut(s)	1033
BsrDI	GCAATG	1 cut(s)	693
BsrGI	TGTACA	1 cut(s)	888
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
BssNI	GRCGYC	1 cut(s)	1034
BssT1I	CCWWGG	1 cut(s)	459
Bst4CI	ACNGT	2 cut(s)	852, 910
Bst6I	CTCTTC	4 cut(s)	581, 686, 923, 947
BstACI	GRCGYC	1 cut(s)	1034
BstAUI	TGTACA	1 cut(s)	888
BstBAI	YACGTR	2 cut(s)	1167, 1324
BstC8I	GCNNGC	2 cut(s)	106, 903
BstDEI	CTNAG	8 cut(s)	66, 117, 143, 481, 666, 923, 1012, 1190
BstF5I	GGATG	4 cut(s)	350, 393, 658, 1285
BstH2I	RGCGCY	1 cut(s)	1037
BstHHI	GCGC	1 cut(s)	1036
BstKTI	GATC	9 cut(s)	140, 321, 448, 521, 572, 597, 622, 830, 1293
BstMAI	GTCTC	1 cut(s)	1015
BstMBI	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
BstMCI	CGRYCG	1 cut(s)	830
BstMWI	GCNNNNNNNGC	2 cut(s)	940, 1280
BstSNI	TACGTA	1 cut(s)	1324
BstV1I	GCAGC	2 cut(s)	670, 1258
BstV2I	GAAGAC	1 cut(s)	41
BstX2I	RGATCY	4 cut(s)	137, 445, 518, 569
BstYI	RGATCY	4 cut(s)	137, 445, 518, 569
Bsu15I	ATCGAT	1 cut(s)	826
BsuRI	GGCC	3 cut(s)	92, 380, 675
BsuTUI	ATCGAT	1 cut(s)	826
BtsCI	GGATG	4 cut(s)	350, 393, 658, 1285
BtsI	GCAGTG	2 cut(s)	81, 801
BtsIMutI	CAGTG	3 cut(s)	81, 801, 915
Cac8I	GCNNGC	2 cut(s)	106, 903
CaiI	CAGNNNCTG	1 cut(s)	803
CfoI	GCGC	1 cut(s)	1036
Cfr13I	GGNCC	5 cut(s)	62, 124, 278, 674, 1246
ClaI	ATCGAT	1 cut(s)	826
Csp6I	GTAC	5 cut(s)	273, 848, 889, 1091, 1102
CviAII	CATG	1 cut(s)	50
CviQI	GTAC	5 cut(s)	273, 848, 889, 1091, 1102
DdeI	CTNAG	8 cut(s)	66, 117, 143, 481, 666, 923, 1012, 1190
DinI	GGCGCC	1 cut(s)	1035
DpnI	GATC	9 cut(s)	139, 320, 447, 520, 571, 596, 621, 829, 1292
DpnII	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
DriI	GACNNNNNGTC	1 cut(s)	1258
Eam1104I	CTCTTC	4 cut(s)	581, 686, 923, 947
Eam1105I	GACNNNNNGTC	1 cut(s)	1258
EarI	CTCTTC	4 cut(s)	581, 686, 923, 947
Ecl136II	GAGCTC	1 cut(s)	957
Eco105I	TACGTA	1 cut(s)	1324
Eco130I	CCWWGG	1 cut(s)	459
Eco24I	GRGCYC	1 cut(s)	959
Eco32I	GATATC	1 cut(s)	1181
Eco47I	GGWCC	4 cut(s)	62, 124, 278, 1246
Eco53kI	GAGCTC	1 cut(s)	957
Eco57I	CTGAAG	2 cut(s)	78, 636
Eco72I	CACGTG	1 cut(s)	1167
EcoICRI	GAGCTC	1 cut(s)	957
EcoO109I	RGGNCCY	2 cut(s)	62, 1246
EcoRV	GATATC	1 cut(s)	1181
EcoT14I	CCWWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	959
EgeI	GGCGCC	1 cut(s)	1035
EheI	GGCGCC	1 cut(s)	1035
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	1 cut(s)	53
FatI	CATG	1 cut(s)	49
FauNDI	CATATG	1 cut(s)	1080
FbaI	TGATCA	1 cut(s)	619
Fnu4HI	GCNGC	3 cut(s)	684, 941, 1272
FokI	GGATG	4 cut(s)	357, 400, 645, 1292
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	3 cut(s)	684, 941, 1272
FspBI	CTAG	6 cut(s)	105, 236, 282, 858, 935, 1148
GlaI	GCGC	1 cut(s)	1035
GluI	GCNGC	3 cut(s)	684, 941, 1272
HaeII	RGCGCY	1 cut(s)	1037
HaeIII	GGCC	3 cut(s)	92, 380, 675
HhaI	GCGC	1 cut(s)	1036
Hin1I	GRCGYC	1 cut(s)	1034
Hin1II	CATG	1 cut(s)	53
Hin6I	GCGC	1 cut(s)	1034
HinP1I	GCGC	1 cut(s)	1034
HincII	GTYRAC	1 cut(s)	334
HindII	GTYRAC	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	4 cut(s)	11, 25, 614, 1259
HphI	GGTGA	5 cut(s)	241, 500, 747, 754, 1355
Hpy166II	GTNNAC	3 cut(s)	232, 334, 1309
Hpy188I	TCNGA	6 cut(s)	24, 445, 619, 667, 749, 1191
Hpy188III	TCNNGA	7 cut(s)	65, 449, 598, 703, 990, 1014, 1244
Hpy8I	GTNNAC	3 cut(s)	232, 334, 1309
Hpy99I	CGWCG	1 cut(s)	636
HpyAV	CCTTC	6 cut(s)	53, 283, 503, 665, 700, 974
HpyCH4III	ACNGT	2 cut(s)	852, 910
HpyCH4IV	ACGT	2 cut(s)	1166, 1323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	940, 1280
HpyF3I	CTNAG	8 cut(s)	66, 117, 143, 481, 666, 923, 1012, 1190
HpySE526I	ACGT	2 cut(s)	1166, 1323
Hsp92I	GRCGYC	1 cut(s)	1034
Hsp92II	CATG	1 cut(s)	53
HspAI	GCGC	1 cut(s)	1034
KasI	GGCGCC	1 cut(s)	1033
Ksp22I	TGATCA	1 cut(s)	619
Kzo9I	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
LguI	GCTCTTC	1 cut(s)	947
Lsp1109I	GCAGC	2 cut(s)	670, 1258
LweI	GCATC	2 cut(s)	378, 1270
MaeI	CTAG	6 cut(s)	105, 236, 282, 858, 935, 1148
MaeII	ACGT	2 cut(s)	1166, 1323
MaeIII	GTNAC	2 cut(s)	422, 760
MalI	GATC	9 cut(s)	139, 320, 447, 520, 571, 596, 621, 829, 1292
MboI	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
MfeI	CAATTG	3 cut(s)	678, 766, 1302
MflI	RGATCY	4 cut(s)	137, 445, 518, 569
MhlI	GDGCHC	2 cut(s)	959, 1196
Mly113I	GGCGCC	1 cut(s)	1034
MlyI	GAGTC	1 cut(s)	1268
MnlI	CCTC	7 cut(s)	46, 378, 661, 924, 997, 1227, 1321
MseI	TTAA	1 cut(s)	1316
MspA1I	CMGCKG	1 cut(s)	1271
MunI	CAATTG	3 cut(s)	678, 766, 1302
MwoI	GCNNNNNNNGC	2 cut(s)	940, 1280
NarI	GGCGCC	1 cut(s)	1034
NdeI	CATATG	1 cut(s)	1080
NdeII	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	1 cut(s)	53
NlaIV	GGNNCC	2 cut(s)	1035, 1248
NmuCI	GTSAC	2 cut(s)	422, 760
PciSI	GCTCTTC	1 cut(s)	947
PfeI	GAWTC	3 cut(s)	11, 25, 614
PkrI	GCNGC	3 cut(s)	685, 942, 1273
Ple19I	CGATCG	1 cut(s)	830
PleI	GAGTC	1 cut(s)	1267
PluTI	GGCGCC	1 cut(s)	1037
PmaCI	CACGTG	1 cut(s)	1167
PmlI	CACGTG	1 cut(s)	1167
PpsI	GAGTC	1 cut(s)	1267
Ppu21I	YACGTR	2 cut(s)	1167, 1324
PpuMI	RGGWCCY	2 cut(s)	62, 1246
Psp124BI	GAGCTC	1 cut(s)	959
Psp5II	RGGWCCY	2 cut(s)	62, 1246
PspCI	CACGTG	1 cut(s)	1167
PspN4I	GGNNCC	2 cut(s)	1035, 1248
PspPI	GGNCC	5 cut(s)	62, 124, 278, 674, 1246
PspPPI	RGGWCCY	2 cut(s)	62, 1246
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	4 cut(s)	137, 445, 518, 569
PvuI	CGATCG	1 cut(s)	830
RsaI	GTAC	5 cut(s)	274, 849, 890, 1092, 1103
RsaNI	GTAC	5 cut(s)	273, 848, 889, 1091, 1102
SacI	GAGCTC	1 cut(s)	959
SapI	GCTCTTC	1 cut(s)	947
SaqAI	TTAA	1 cut(s)	1316
SatI	GCNGC	3 cut(s)	684, 941, 1272
Sau3AI	GATC	9 cut(s)	137, 318, 445, 518, 569, 594, 619, 827, 1290
Sau96I	GGNCC	5 cut(s)	62, 124, 278, 674, 1246
SchI	GAGTC	1 cut(s)	1268
SduI	GDGCHC	2 cut(s)	959, 1196
SfaNI	GCATC	2 cut(s)	378, 1270
SfoI	GGCGCC	1 cut(s)	1035
SinI	GGWCC	4 cut(s)	62, 124, 278, 1246
SmlI	CTYRAG	2 cut(s)	605, 775
SmoI	CTYRAG	2 cut(s)	605, 775
SnaBI	TACGTA	1 cut(s)	1324
SsiI	CCGC	2 cut(s)	941, 1269
SspDI	GGCGCC	1 cut(s)	1033
SspI	AATATT	1 cut(s)	1020
SspMI	CTAG	6 cut(s)	105, 236, 282, 858, 935, 1148
SstI	GAGCTC	1 cut(s)	959
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	852, 910
TaiI	ACGT	2 cut(s)	1169, 1326
TaqI	TCGA	4 cut(s)	826, 830, 959, 1352
TatI	WGTACW	3 cut(s)	272, 888, 1101
TauI	GCSGC	1 cut(s)	943
TfiI	GAWTC	3 cut(s)	11, 25, 614
Tru1I	TTAA	1 cut(s)	1316
Tru9I	TTAA	1 cut(s)	1316
TscAI	CASTG	3 cut(s)	81, 808, 915
TseFI	GTSAC	2 cut(s)	422, 760
TseI	GCWGC	2 cut(s)	683, 1271
Tsp45I	GTSAC	2 cut(s)	422, 760
TspDTI	ATGAA	9 cut(s)	178, 345, 383, 426, 446, 704, 954, 993, 1349
TspGWI	ACGGA	2 cut(s)	148, 1269
TspRI	CASTG	3 cut(s)	81, 808, 915
VpaK11BI	GGWCC	4 cut(s)	62, 124, 278, 1246
XapI	RAATTY	6 cut(s)	84, 395, 492, 751, 1172, 1221
XspI	CTAG	6 cut(s)	105, 236, 282, 858, 935, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.