Rroxscaffold_4G00316830

Domain of unknown function (DUF3475)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
41753751 .. 41758021
4271 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00316830.1

Sequence Viewer

Length: 1683 bp
ATGTCTAAGCTAGTCCAGTTATGGCAATTTCTGAGTGATAAACAAGTGGCTAGGCTCAGAGAGGAAATTTCAAATTCAGTGGGTATAAGAAAGCTTGTGTCAGATGATGATGATTATATTGGAGGTTTAATATGCATCGAGTTGTTCGAGAATATGGTCCGTGTGGCAAAATCTGTGGACAGGCTTGGGAGGAATTGTACTGATCCTAGTTTGAAGGGTTTTGAGACTGCTATTAGTGATTTGATCTATTACGGTGTTGACACTTATGGATGGCAATTATCATGGAAAAAGATGGAGAGGAAGGCCAAGAAGATGGAGAGGTTCATTTCAATAAATGCAAATTTGTATGAAGAGATGGAAGTTCTTTCAGAGCTTGAACAGACATTGAGCAGAATGAAAGGCAGTGGAGACTTAGATGGTGTTAATTTGCCGGAGTTTCAAAAGAAGGTAGTGTGGAAGCGGCAGGAGGTGAAGAATTTGAAAGAGGCCTCTCTGTGGAACAGAACTTATGACTATACAGTCCTCCTTTTAGCAAGATCTCTCTTCACAATATTTGGTAGGATCAAGCATGTCTTTGGAGTTCAACAGATGGTAGATGGTGAATCCAAAGATTCTGATCACATTAGTCGTAGTCATTCAGTGTCTGCAATAATACAGCCTTCAGTCCAACCATCTGAGAACGGTCTTCCAAGATTTGCCTCAGGTCCCCTTGGGAAGTTTGCTGCTACATCAGGGCCAATTTCAAAAACACACAAAACCAACAATTTCTTTTCAGGCCCTCTTGGTGGCTCAAGCACAAAATCAGGCCCTATTTCAGCAAAAAAGAAAGACGTCAACTTCTTTTCAGGTCCTCTTGGGAAGTCAACAAAATCAGGCCCAATTGCTGCAACTAATAGAACCTTCAGGAAGTTCTGGAAGTCTCGTGATCACTCAGTCACTAATGGTGAGAAGAAACCACCTACAAAGCCCAATCGGTTGACTCAAGTTGGACCTTTTAAAGGATGCATGATAAGCAATTCACCAGTCACCAATTGCTACTTGAATTCAGATGGTGTTCGTTCAGCAATTCTCAATGTAGCCAGAGATGCCAATGGAGACATTTTGGCTTCTGGCAGCAAACTTCATCCTAGTCCGTCAATCTTCAGTTCCAAGTACAAATTGTTGGATGCTCCACCTGAAACCCTTGGTGCTGCTGCCTTAGCACTGCACTACGCAAATGTTGTTATTGTAATCGAGAAGTTAGTTGCATCTCCTCACTTGATTGGTCTTGATGCGAGAGATGACCTGTACAATATGTTGCCTGCAAGTGTGAGAGCTGCACTAAGGGCAAGGCTAAAGCCATACAGTAAGAGCTTAACTTCATCAGTTTACGATACAGTTCTTGCAGGAGAGTGGAATGAGGCAATGGCGGGGATATTAGAATGGTTGGCACCACTTGCTCATAACATGATAAGATGGCAATCCGAGAGGAGCTTTGAACAGCAAACATTGGTTTCCAGGACGCATGTTCTTCTGGTTCAAACCCTCTACTTTGCAAATCAACAGAAAACAGAAGCGACAATTACAGAGCTTCTTGTTGGTTTGAATTACGTCTGGAGGTTTGGCAGAGAAGTCAATGCAAAAGCTCTGTTAGATTGTGATAGCAATAGAACATATGATGAATTTTTGGATATGGATGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

560

Amino Acids

62.4

Weight (kDa)

9.26

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3475 PF11961 1 - 47 6.4e-18 Domain of unknown function (DUF3475)
DUF668 PF05003 394 - 485 2.1e-35 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
AatII GACGTC 1 cut(s) 834
AccB1I GGYRCC 1 cut(s) 1429
AciI CCGC 2 cut(s) 460, 1409
AclWI GGATC 2 cut(s) 197, 569
AcsI RAATTY 6 cut(s) 66, 73, 340, 475, 1042, 1661
AcuI CTGAAG 3 cut(s) 645, 886, 1126
AcyI GRCGYC 1 cut(s) 831
AfaI GTAC 3 cut(s) 199, 1154, 1289
AfiI CCNNNNNNNGG 3 cut(s) 495, 785, 998
AjnI CCWGG 1 cut(s) 1496
AluBI AGCT 8 cut(s) 10, 94, 373, 1316, 1353, 1473, 1570, 1625
AluI AGCT 8 cut(s) 10, 94, 373, 1316, 1353, 1473, 1570, 1625
Alw26I GTCTC 4 cut(s) 218, 402, 924, 1089
AlwI GGATC 2 cut(s) 197, 569
AlwNI CAGNNNCTG 1 cut(s) 644
AoxI GGCC 6 cut(s) 303, 486, 734, 775, 805, 874
ApeKI GCWGC 6 cut(s) 722, 884, 1113, 1190, 1193, 1316
ApoI RAATTY 6 cut(s) 66, 73, 340, 475, 1042, 1661
AspS9I GGNCC 8 cut(s) 157, 704, 734, 776, 806, 848, 875, 989
AsuHPI GGTGA 5 cut(s) 481, 611, 956, 1011, 1018
AvaII GGWCC 4 cut(s) 157, 704, 848, 989
AxyI CCTNAGG 1 cut(s) 700
BanI GGYRCC 1 cut(s) 1429
BauI CACGAG 1 cut(s) 921
BbsI GAAGAC 1 cut(s) 677
BbvI GCAGC 6 cut(s) 709, 871, 1125, 1177, 1180, 1303
BciT130I CCWGG 1 cut(s) 1498
BclI TGATCA 2 cut(s) 616, 925
BcoDI GTCTC 4 cut(s) 218, 402, 924, 1089
BfaI CTAG 4 cut(s) 11, 51, 207, 1128
BglII AGATCT 1 cut(s) 536
BisI GCNGC 7 cut(s) 461, 723, 885, 1114, 1191, 1194, 1317
BlsI GCNGC 7 cut(s) 462, 724, 886, 1115, 1192, 1195, 1318
Bme1390I CCNGG 1 cut(s) 1498
Bme18I GGWCC 4 cut(s) 157, 704, 848, 989
BmgT120I GGNCC 8 cut(s) 157, 704, 734, 776, 806, 848, 875, 989
BmiI GGNNCC 2 cut(s) 706, 1431
BmrFI CCNGG 1 cut(s) 1498
BmsI GCATC 6 cut(s) 144, 992, 1075, 1156, 1256, 1261
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 1615
Bpu10I CCTNAGC 1 cut(s) 1198
BpuEI CTTGAG 2 cut(s) 775, 966
BsaBI GATNNNNATC 2 cut(s) 615, 1459
BsaHI GRCGYC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 709, 1183
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 3 cut(s) 495, 785, 998
Bse1I ACTGG 2 cut(s) 16, 1022
Bse21I CCTNAGG 1 cut(s) 700
Bse3DI GCAATG 1 cut(s) 1410
Bse8I GATNNNNATC 2 cut(s) 615, 1459
BseBI CCWGG 1 cut(s) 1498
BseDI CCNNGG 2 cut(s) 709, 1183
BseGI GGATG 5 cut(s) 275, 1007, 1123, 1171, 1681
BseJI GATNNNNATC 2 cut(s) 615, 1459
BseLI CCNNNNNNNGG 3 cut(s) 495, 785, 998
BseMI GCAATG 1 cut(s) 1410
BseMII CTCAG 5 cut(s) 23, 70, 666, 714, 945
BseNI ACTGG 2 cut(s) 16, 1022
BseRI GAGGAG 2 cut(s) 1242, 1483
BseXI GCAGC 6 cut(s) 709, 871, 1125, 1177, 1180, 1303
BsgI GTGCAG 2 cut(s) 1190, 1302
BshFI GGCC 6 cut(s) 305, 488, 736, 777, 807, 876
BshNI GGYRCC 1 cut(s) 1429
BsiSI CCGG 1 cut(s) 431
BslFI GGGAC 1 cut(s) 690
BslI CCNNNNNNNGG 3 cut(s) 495, 785, 998
BsmAI GTCTC 4 cut(s) 218, 402, 924, 1089
BsmFI GGGAC 1 cut(s) 690
BsnI GGCC 6 cut(s) 305, 488, 736, 777, 807, 876
Bsp1407I TGTACA 1 cut(s) 1287
Bsp143I GATC 6 cut(s) 202, 243, 536, 561, 616, 925
BspACI CCGC 2 cut(s) 460, 1409
BspANI GGCC 6 cut(s) 305, 488, 736, 777, 807, 876
BspCNI CTCAG 5 cut(s) 24, 69, 667, 713, 944
BspLI GGNNCC 2 cut(s) 706, 1431
BspPI GGATC 2 cut(s) 197, 569
BspT107I GGYRCC 1 cut(s) 1429
BsrDI GCAATG 1 cut(s) 1410
BsrGI TGTACA 1 cut(s) 1287
BsrI ACTGG 2 cut(s) 16, 1022
BssECI CCNNGG 2 cut(s) 709, 1183
BssMI GATC 6 cut(s) 202, 243, 536, 561, 616, 925
BssNI GRCGYC 1 cut(s) 831
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 2 cut(s) 709, 1183
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 1498
Bst4CI ACNGT 5 cut(s) 254, 520, 683, 1346, 1378
Bst6I CTCTTC 2 cut(s) 345, 548
BstACI GRCGYC 1 cut(s) 831
BstAPI GCANNNNNTGC 1 cut(s) 1436
BstAUI TGTACA 1 cut(s) 1287
BstC8I GCNNGC 1 cut(s) 1302
BstDEI CTNAG 9 cut(s) 6, 32, 56, 412, 675, 700, 931, 1198, 1322
BstENI CCTNNNNNAGG 1 cut(s) 996
BstF5I GGATG 5 cut(s) 275, 1007, 1123, 1171, 1681
BstKTI GATC 6 cut(s) 205, 246, 539, 564, 619, 928
BstMAI GTCTC 4 cut(s) 218, 402, 924, 1089
BstMBI GATC 6 cut(s) 202, 243, 536, 561, 616, 925
BstMWI GCNNNNNNNGC 5 cut(s) 1011, 1085, 1199, 1325, 1436
BstNI CCWGG 1 cut(s) 1498
BstNSI RCATGY 2 cut(s) 572, 1508
BstSCI CCNGG 1 cut(s) 1496
BstV1I GCAGC 6 cut(s) 709, 871, 1125, 1177, 1180, 1303
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 1 cut(s) 536
BstXI CCANNNNNNTGG 1 cut(s) 313
BstYI RGATCY 1 cut(s) 536
Bsu36I CCTNAGG 1 cut(s) 700
BsuRI GGCC 6 cut(s) 305, 488, 736, 777, 807, 876
BtsCI GGATG 5 cut(s) 275, 1007, 1123, 1171, 1681
BtsI GCAGTG 2 cut(s) 409, 1202
BtsIMutI CAGTG 4 cut(s) 84, 409, 645, 1202
Cac8I GCNNGC 1 cut(s) 1302
CaiI CAGNNNCTG 1 cut(s) 644
Cfr13I GGNCC 8 cut(s) 157, 704, 734, 776, 806, 848, 875, 989
CseI GACGC 1 cut(s) 1510
Csp6I GTAC 3 cut(s) 198, 1153, 1288
CspCI CAANNNNNGTGG 4 cut(s) 60, 95, 156, 191
CviAII CATG 5 cut(s) 282, 569, 1006, 1447, 1505
CviQI GTAC 3 cut(s) 198, 1153, 1288
DdeI CTNAG 9 cut(s) 6, 32, 56, 412, 675, 700, 931, 1198, 1322
DpnI GATC 6 cut(s) 204, 245, 538, 563, 618, 927
DpnII GATC 6 cut(s) 202, 243, 536, 561, 616, 925
DraI TTTAAA 1 cut(s) 997
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
Eam1104I CTCTTC 2 cut(s) 345, 548
EarI CTCTTC 2 cut(s) 345, 548
Eco130I CCWWGG 2 cut(s) 709, 1183
Eco147I AGGCCT 1 cut(s) 488
Eco47I GGWCC 4 cut(s) 157, 704, 848, 989
Eco57I CTGAAG 3 cut(s) 645, 886, 1126
Eco81I CCTNAGG 1 cut(s) 700
EcoNI CCTNNNNNAGG 1 cut(s) 996
EcoO109I RGGNCCY 4 cut(s) 704, 776, 806, 848
EcoRI GAATTC 1 cut(s) 1042
EcoRII CCWGG 1 cut(s) 1496
EcoT14I CCWWGG 2 cut(s) 709, 1183
EcoT22I ATGCAT 2 cut(s) 137, 1007
ErhI CCWWGG 2 cut(s) 709, 1183
FaeI CATG 5 cut(s) 285, 572, 1009, 1450, 1508
FalI AAGNNNNNCTT 2 cut(s) 557, 589
FaqI GGGAC 1 cut(s) 690
FatI CATG 5 cut(s) 281, 568, 1005, 1446, 1504
FauI CCCGC 1 cut(s) 1402
FauNDI CATATG 1 cut(s) 1654
FbaI TGATCA 2 cut(s) 616, 925
Fnu4HI GCNGC 7 cut(s) 461, 723, 885, 1114, 1191, 1194, 1317
FokI GGATG 4 cut(s) 282, 1014, 1110, 1178
Fsp4HI GCNGC 7 cut(s) 461, 723, 885, 1114, 1191, 1194, 1317
FspBI CTAG 4 cut(s) 11, 51, 207, 1128
GluI GCNGC 7 cut(s) 461, 723, 885, 1114, 1191, 1194, 1317
GsuI CTGGAG 1 cut(s) 1615
HaeIII GGCC 6 cut(s) 305, 488, 736, 777, 807, 876
HapII CCGG 1 cut(s) 431
HgaI GACGC 1 cut(s) 1510
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 5 cut(s) 285, 572, 1009, 1450, 1508
HincII GTYRAC 4 cut(s) 259, 835, 864, 978
HindII GTYRAC 4 cut(s) 259, 835, 864, 978
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 3 cut(s) 602, 611, 979
HpaII CCGG 1 cut(s) 431
HphI GGTGA 5 cut(s) 481, 611, 956, 1011, 1018
Hpy166II GTNNAC 6 cut(s) 178, 259, 835, 864, 978, 1369
Hpy188I TCNGA 8 cut(s) 33, 59, 103, 370, 616, 676, 1048, 1465
Hpy188III TCNNGA 7 cut(s) 148, 904, 913, 923, 1234, 1268, 1594
Hpy8I GTNNAC 6 cut(s) 178, 259, 835, 864, 978, 1369
HpyAV CCTTC 5 cut(s) 208, 295, 439, 669, 910
HpyCH4III ACNGT 5 cut(s) 254, 520, 683, 1346, 1378
HpyCH4IV ACGT 2 cut(s) 831, 1590
HpyF10VI GCNNNNNNNGC 5 cut(s) 1011, 1085, 1199, 1325, 1436
HpyF3I CTNAG 9 cut(s) 6, 32, 56, 412, 675, 700, 931, 1198, 1322
HpySE526I ACGT 2 cut(s) 831, 1590
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 5 cut(s) 285, 572, 1009, 1450, 1508
Ksp22I TGATCA 2 cut(s) 616, 925
Kzo9I GATC 6 cut(s) 202, 243, 536, 561, 616, 925
LmnI GCTCC 2 cut(s) 1174, 1470
Lsp1109I GCAGC 6 cut(s) 709, 871, 1125, 1177, 1180, 1303
LweI GCATC 6 cut(s) 144, 992, 1075, 1156, 1256, 1261
MaeI CTAG 4 cut(s) 11, 51, 207, 1128
MaeII ACGT 2 cut(s) 831, 1590
MaeIII GTNAC 2 cut(s) 934, 1024
MalI GATC 6 cut(s) 204, 245, 538, 563, 618, 927
MboI GATC 6 cut(s) 202, 243, 536, 561, 616, 925
MboII GAAGA 8 cut(s) 322, 362, 484, 535, 677, 961, 1132, 1502
MfeI CAATTG 2 cut(s) 879, 1030
MflI RGATCY 1 cut(s) 536
MlyI GAGTC 1 cut(s) 973
MmeI TCCRAC 3 cut(s) 691, 967, 1143
Mph1103I ATGCAT 2 cut(s) 137, 1007
MseI TTAA 4 cut(s) 128, 423, 996, 1355
MspI CCGG 1 cut(s) 431
MspR9I CCNGG 1 cut(s) 1498
MunI CAATTG 2 cut(s) 879, 1030
MvaI CCWGG 1 cut(s) 1498
MwoI GCNNNNNNNGC 5 cut(s) 1011, 1085, 1199, 1325, 1436
NdeI CATATG 1 cut(s) 1654
NdeII GATC 6 cut(s) 202, 243, 536, 561, 616, 925
NlaIII CATG 5 cut(s) 285, 572, 1009, 1450, 1508
NlaIV GGNNCC 2 cut(s) 706, 1431
NmuCI GTSAC 2 cut(s) 934, 1024
NsiI ATGCAT 2 cut(s) 137, 1007
NspI RCATGY 2 cut(s) 572, 1508
PceI AGGCCT 1 cut(s) 488
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PfeI GAWTC 2 cut(s) 602, 611
PfoI TCCNGGA 1 cut(s) 1496
PkrI GCNGC 7 cut(s) 462, 724, 886, 1115, 1192, 1195, 1318
PleI GAGTC 1 cut(s) 973
PpsI GAGTC 1 cut(s) 973
PpuMI RGGWCCY 2 cut(s) 704, 848
Psp5II RGGWCCY 2 cut(s) 704, 848
Psp6I CCWGG 1 cut(s) 1496
PspGI CCWGG 1 cut(s) 1496
PspN4I GGNNCC 2 cut(s) 706, 1431
PspPI GGNCC 8 cut(s) 157, 704, 734, 776, 806, 848, 875, 989
PspPPI RGGWCCY 2 cut(s) 704, 848
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 1 cut(s) 536
RsaI GTAC 3 cut(s) 199, 1154, 1289
RsaNI GTAC 3 cut(s) 198, 1153, 1288
SaqAI TTAA 4 cut(s) 128, 423, 996, 1355
SatI GCNGC 7 cut(s) 461, 723, 885, 1114, 1191, 1194, 1317
Sau3AI GATC 6 cut(s) 202, 243, 536, 561, 616, 925
Sau96I GGNCC 8 cut(s) 157, 704, 734, 776, 806, 848, 875, 989
SchI GAGTC 1 cut(s) 973
ScrFI CCNGG 1 cut(s) 1498
SfaNI GCATC 6 cut(s) 144, 992, 1075, 1156, 1256, 1261
SinI GGWCC 4 cut(s) 157, 704, 848, 989
SmlI CTYRAG 2 cut(s) 790, 981
SmoI CTYRAG 2 cut(s) 790, 981
SseBI AGGCCT 1 cut(s) 488
SsiI CCGC 2 cut(s) 460, 1409
SspI AATATT 1 cut(s) 552
SspMI CTAG 4 cut(s) 11, 51, 207, 1128
StuI AGGCCT 1 cut(s) 488
StyD4I CCNGG 1 cut(s) 1496
StyI CCWWGG 2 cut(s) 709, 1183
TaaI ACNGT 5 cut(s) 254, 520, 683, 1346, 1378
TaiI ACGT 2 cut(s) 834, 1593
TaqI TCGA 3 cut(s) 138, 147, 1233
TatI WGTACW 3 cut(s) 197, 1152, 1287
TauI GCSGC 1 cut(s) 463
TfiI GAWTC 2 cut(s) 602, 611
Tru1I TTAA 4 cut(s) 128, 423, 996, 1355
Tru9I TTAA 4 cut(s) 128, 423, 996, 1355
TscAI CASTG 4 cut(s) 84, 409, 645, 1209
TseFI GTSAC 2 cut(s) 934, 1024
TseI GCWGC 6 cut(s) 722, 884, 1113, 1190, 1193, 1316
Tsp45I GTSAC 2 cut(s) 934, 1024
TspDTI ATGAA 6 cut(s) 313, 363, 410, 1112, 1350, 1674
TspGWI ACGGA 2 cut(s) 149, 1122
TspRI CASTG 4 cut(s) 84, 409, 645, 1209
VpaK11BI GGWCC 4 cut(s) 157, 704, 848, 989
XagI CCTNNNNNAGG 1 cut(s) 996
XapI RAATTY 6 cut(s) 66, 73, 340, 475, 1042, 1661
XceI RCATGY 2 cut(s) 572, 1508
XspI CTAG 4 cut(s) 11, 51, 207, 1128
ZraI GACGTC 1 cut(s) 832
Zsp2I ATGCAT 2 cut(s) 137, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.