Rorug01G0114000

Domain of unknown function (DUF3475)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
20183066 .. 20191772
8707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0114000.1

Sequence Viewer

Length: 3039 bp
ATGAAGTTTTTGACAATTTGTATGCTTTTCTCTCTAACTAGAATTGCGGCGATTGTGACAGGTTATTTCCAAATAAATCAGGTGGAGGGGAAGCTAGTGATTACGGGAGGGATAGAAGAAGCCATCCAGGTAAGTAGAGTCCAAGATGAAGAAGGTAATAGATATGTGGAATTTTTGGGTAACGTGCCATCTGAGTACATGAAGGAGGGCGGCAAAGCTATAACTTTTGAAGGTTTGCGAAGGATGTTCGAGAAGGTACCCAGAGATGTCGATGAGGAAACATTTGTCAGACATGTTAGAGCCTTTGCCCTCTATGTTGTCAACACGACAATCACGGTGACCACCGAGAATAAATATGCGAGTGTGGCCTGCTTGAGGGCCTTTTCTGACATTCACCAAATAAAGAACTTCGCATGGGGAGTTGCAATGCTTTCCCAAGTCCACTATAGTTTGATGAAGTATGAGACCAAGAAGGGGGCTAATATTGGAGGTCACATGTACTTCTTGATGGTGTGGGCGTTGGAGCATCTCCCTGCCTTTCGAGATAGTCTAGGGGTTTTGGTTCCTGCACAGTGCGATTTCCCGATGGCCTGTAGCTGGGCATCAGCCCTTTCCAAAAAGCTTGCTAATAGGAACCAGCATCAGTCCTACAGTCAGCTGCTGGATCAGCCTTGCGAGGTTGATTGGAATCCTTATTCTAGGCTGGGAGATACTTTTCTCCCCGAGGGGATTAGCAACCAGCGACGGATGAGAGGGTATCGTGGGGTTCTAGTCAACGCTTTCCACAAGCAGCCCCTAGTCTACCATCGTCCTGAGTTTTGCCCGAGGAAACTGCAGTTTTCAACAGTGGATGTGAGCGGTTGTCGCCCCTTGTGGCAAATTAAAATCTCGGACAAGACTGGTAAAGAAGTAACAGTACGGAACTGGACAAAACATAAAGCAGAGTGGGATAACTTTGAGCAATGTTTTGTGACCGGGACACCTTTGGATGGTGATGGACATGACATTTTTTTGGCTGGTGATGGCACATTCCATTTGGAAGAGCTGAGAGCAGTGACGGCTGGTGATTTCCCTGTCCCGGAGGAAAACGATCTGCATGATGCAGATACTCATGATGCAAATCTGCATGATGAGATGGAGACAAATCTGCATGATGAGATGGAGACAAATAGGTTGAATGGTGTTGGTGATGGTGATGATGAGGATCGACTTATACAGTCACGTGGAGGCTTTTATGATGATGGTGATGGTGGTGGTGGTGGTGGTGGTGAACGTGATATTTCGTTGAATATGTTTCATGACTACTTTGCCGGGCAGAATGATGATGGTTATTTCCAAATAAATCAGGTGGAGGGGAAGCTAGTGACTAAGGGAGGGATAGAAGAAGGCATCCAGGTAAGTAGAGTCCAAGATGAAGAAGGTAATAGATATGTGGAATTTTTGGGTAACGTGCCATCTGAGTACATGAAGGAGGGCGGCAAAGCTATAACTTTTGAAGGTTTGCGAAGGATGTTCGAGAAGGTACCCAGAGATGTCGATGAGGAAACATTTGCCAGACATGTTAGAGCATTTGCCCTCTATGTTGTCAACACGACAATCACGGTGACCACCGAGAATAAATATGCGAGTGTGGCCTGCTTGAGGGCCTTTTCTGACATTCACCAAATAAAGAACTTCGCATGGGGAGTTGCAATGCTTTCCCAAGTCCACTATAGTTTGATGAAGTATGAGACCAAGAAGGGGGCTAATATTGGAGGTCACATGTACTTCTTGATGGTGTGGGCGTTGGAGCATCTCCCTACCTTTCGAGATAGTCTAGGGGTTTTGGTTCCTGCACAGTGCGATTTCCCGCTGGCCTGTAGCTGGGCATCAGCCCTTTCCAAAAAGCTTGCTAAGAGGAACCGGCATCAGTCCTACAGTCAGCTACTGGATCAGCCTTGCGAGGTTGATTGGAATCCTTATTCTAGGCTGGGAGATACTTTTCTCCCCGAGGGGATTAGCAACCAGCGACGGATGAGAGGGTATCGTGGGGTTCTAGTCAACGCTTTCCACAAGCAGCCCCTAGTCTACCATCGTCCTGAGTTTTGCCCGAGGAAACTGCAGTTTTCAACGGTGGATGTGAGCGGTTGTCGCCCCTTGTGGCAAATTAAAATCTCGGACAAGACTGGTAAAGAAGTAACAGTACGGAATTGGACAAAACATAAAGCAGAGTGGGATAACTTTGAGCAATGTTTTGTGACCGGGACACCTTTGGCTGGTGATGGTAGCTCCGCCTTGAGAAGCAATGGTGCGGTATTATTGGCCACTAATGATCACAAGTATGTGAACTTGTGCTACTTGAAGAGTGTGTCTAGGGGGGAACTTAGGGAATCTGCATGGGGACTTGCAATCCTCACCCACATGCACTATTATATGCTGACTTATGTGTCGAATGAGGACAAGACGTCTATAGGTGCTCACATGTTCATGCTCATGGTGTGGGCGATCGAGCATATCCCTAGCTTTGCTACGGAACTCTTTGGGCCCGACTTTCGTGATTATCCTGTAGAGTTTCCATTTTTACTTGGCGGCCTTATAATAGGCTTCCTAGGTTCTTCCTTCCCCAAGATCTATCGGACCAGTTATGGTTGGGGAGAGCTGTTGGCTCAGCATAGCCAACAGCAGGATTCACAATCATTCTTACAGCAGGATCAGCAGCATGATGAGCCACCGCCGACAGTTTATCAGCTGTATGATCATGATGGGTCACTAGATTTCTCGCCGCCGCCGCCGGATGATCATCTACATGATCATGATGTGTCGCTAGGTTTCTCACCGCCATCGTCGCCGTCGCCACTGCATGATCATGATGGGCCCCCGCATGATGATCATGATCACGATCACCAGCTGCCTAATCAAAAGCAGGATCAGTCGCGTTATAACTTGTGGCCTACTTATAAAGCTCCCACTATGTATGGCTTCGACACCCCAGCGACCATTGAGAGACCTTATTTTAGACAGGGGGAGCCTGGACAGCCCATAGCCCCCGGACCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1012

Amino Acids

114.83

Weight (kDa)

5.68

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 51 - 245 6.9e-17 Plant mobile domain
PMD PF10536 469 - 667 5.7e-17 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 2576, 2919, 2937
AasI GACNNNNNNGTC 1 cut(s) 2425
AatII GACGTC 1 cut(s) 2447
Acc65I GGTACC 2 cut(s) 256, 1522
AccB1I GGYRCC 2 cut(s) 256, 1522
AccBSI CCGCTC 2 cut(s) 858, 2124
AccI GTMKAC 2 cut(s) 801, 2067
AccII CGCG 1 cut(s) 2914
AclWI GGATC 5 cut(s) 672, 1212, 1938, 2697, 2913
AcoI YGGCCR 1 cut(s) 2301
AcsI RAATTY 2 cut(s) 170, 1436
AcvI CACGTG 1 cut(s) 1223
AcyI GRCGYC 1 cut(s) 2444
AfaI GTAC 8 cut(s) 197, 258, 500, 918, 1463, 1524, 1766, 2184
AflIII ACRYGT 5 cut(s) 292, 495, 1558, 1761, 2460
AgsI TTSAA 7 cut(s) 230, 843, 1177, 1288, 1496, 2109, 2341
AhdI GACNNNNNGTC 1 cut(s) 2443
AjnI CCWGG 3 cut(s) 126, 1392, 3007
Alw21I GWGCWC 1 cut(s) 2458
Alw26I GTCTC 5 cut(s) 458, 1133, 1157, 1724, 2977
AlwI GGATC 5 cut(s) 672, 1212, 1938, 2697, 2913
AlwNI CAGNNNCTG 2 cut(s) 661, 1927
Ama87I CYCGRG 4 cut(s) 722, 823, 1988, 2089
ApaI GGGCCC 2 cut(s) 2526, 2856
ApeKI GCWGC 5 cut(s) 658, 790, 2056, 2695, 2887
ApoI RAATTY 2 cut(s) 170, 1436
Asp718I GGTACC 2 cut(s) 256, 1522
AspA2I CCTAGG 1 cut(s) 2587
AspS9I GGNCC 8 cut(s) 378, 1644, 2522, 2523, 2616, 2852, 2853, 3029
AsuC2I CCSGG 5 cut(s) 976, 1079, 1312, 2242, 3027
AvaI CYCGRG 4 cut(s) 722, 823, 1988, 2089
AvaII GGWCC 2 cut(s) 2616, 3029
AvrII CCTAGG 1 cut(s) 2587
BaeGI GKGCMC 2 cut(s) 2526, 2856
BalI TGGCCA 1 cut(s) 2303
BanI GGYRCC 2 cut(s) 256, 1522
BanII GRGCYC 2 cut(s) 2526, 2856
BarI GAAGNNNNNNTAC 4 cut(s) 900, 932, 2166, 2198
BbrPI CACGTG 1 cut(s) 1223
Bbv12I GWGCWC 1 cut(s) 2458
BbvI GCAGC 5 cut(s) 645, 802, 2068, 2707, 2874
BceAI ACGGC 2 cut(s) 1074, 2812
BcgI CGANNNNNNTGC 4 cut(s) 814, 848, 2080, 2114
BciT130I CCWGG 3 cut(s) 128, 1394, 3009
BclI TGATCA 7 cut(s) 2311, 2734, 2776, 2788, 2842, 2866, 2872
BcnI CCSGG 5 cut(s) 976, 1079, 1312, 2242, 3027
BcoDI GTCTC 5 cut(s) 458, 1133, 1157, 1724, 2977
BglII AGATCT 1 cut(s) 2607
BlnI CCTAGG 1 cut(s) 2587
BlpI GCTNAGC 1 cut(s) 2646
Bme1390I CCNGG 8 cut(s) 128, 976, 1079, 1312, 1394, 2242, 3009, 3027
Bme18I GGWCC 2 cut(s) 2616, 3029
BmeRI GACNNNNNGTC 1 cut(s) 2443
BmeT110I CYCGRG 4 cut(s) 722, 823, 1988, 2089
BmgT120I GGNCC 8 cut(s) 378, 1644, 2522, 2523, 2616, 2852, 2853, 3029
BmrFI CCNGG 8 cut(s) 128, 976, 1079, 1312, 1394, 2242, 3009, 3027
BmsI GCATC 9 cut(s) 535, 611, 649, 1090, 1105, 1398, 1801, 1877, 1915
Bpu1102I GCTNAGC 1 cut(s) 2646
BpuEI CTTGAG 3 cut(s) 394, 1660, 2296
BpuMI CCSGG 5 cut(s) 976, 1079, 1312, 2242, 3027
BsaAI YACGTR 1 cut(s) 1223
BsaBI GATNNNNATC 7 cut(s) 687, 1119, 1203, 1953, 2778, 2871, 2877
BsaHI GRCGYC 1 cut(s) 2444
BsaI GGTCTC 3 cut(s) 458, 1724, 2977
BsaJI CCNNGG 6 cut(s) 723, 824, 1989, 2090, 2587, 3025
Bse118I RCCGGY 1 cut(s) 1902
Bse1I ACTGG 5 cut(s) 904, 929, 1932, 2170, 2619
Bse3DI GCAATG 5 cut(s) 432, 968, 1698, 2234, 2290
Bse8I GATNNNNATC 7 cut(s) 687, 1119, 1203, 1953, 2778, 2871, 2877
BseBI CCWGG 3 cut(s) 128, 1394, 3009
BseDI CCNNGG 6 cut(s) 723, 824, 1989, 2090, 2587, 3025
BseJI GATNNNNATC 7 cut(s) 687, 1119, 1203, 1953, 2778, 2871, 2877
BseMI GCAATG 5 cut(s) 432, 968, 1698, 2234, 2290
BseMII CTCAG 6 cut(s) 183, 804, 1037, 1449, 2070, 2660
BseNI ACTGG 5 cut(s) 904, 929, 1932, 2170, 2619
BseSI GKGCMC 2 cut(s) 2526, 2856
BseXI GCAGC 5 cut(s) 645, 802, 2068, 2707, 2874
BseYI CCCAGC 5 cut(s) 597, 703, 1863, 1969, 2968
BsgI GTGCAG 2 cut(s) 552, 1818
Bsh1236I CGCG 1 cut(s) 2914
Bsh1285I CGRYCG 1 cut(s) 2487
BshNI GGYRCC 2 cut(s) 256, 1522
BsiEI CGRYCG 1 cut(s) 2487
BsiHKAI GWGCWC 1 cut(s) 2458
BsiHKCI CYCGRG 4 cut(s) 722, 823, 1988, 2089
BsiSI CCGG 7 cut(s) 975, 1079, 1311, 1903, 2241, 2771, 3027
BslFI GGGAC 4 cut(s) 991, 1061, 2257, 2394
BsmAI GTCTC 5 cut(s) 458, 1133, 1157, 1724, 2977
BsmFI GGGAC 4 cut(s) 991, 1061, 2257, 2394
Bso31I GGTCTC 3 cut(s) 458, 1724, 2977
BsoBI CYCGRG 4 cut(s) 722, 823, 1988, 2089
Bsp120I GGGCCC 2 cut(s) 2522, 2852
Bsp1286I GDGCHC 3 cut(s) 2458, 2526, 2856
Bsp1720I GCTNAGC 1 cut(s) 2646
BspCNI CTCAG 6 cut(s) 184, 805, 1038, 1450, 2071, 2659
BspFNI CGCG 1 cut(s) 2914
BspHI TCATGA 6 cut(s) 1111, 1297, 2737, 2791, 2845, 2869
BspMAI CTGCAG 2 cut(s) 837, 2103
BspPI GGATC 5 cut(s) 672, 1212, 1938, 2697, 2913
BspQI GCTCTTC 1 cut(s) 1035
BspT107I GGYRCC 2 cut(s) 256, 1522
BspTNI GGTCTC 3 cut(s) 458, 1724, 2977
BsrBI CCGCTC 2 cut(s) 858, 2124
BsrDI GCAATG 5 cut(s) 432, 968, 1698, 2234, 2290
BsrFI RCCGGY 1 cut(s) 1902
BsrI ACTGG 5 cut(s) 904, 929, 1932, 2170, 2619
BssAI RCCGGY 1 cut(s) 1902
BssECI CCNNGG 6 cut(s) 723, 824, 1989, 2090, 2587, 3025
BssNI GRCGYC 1 cut(s) 2444
BssT1I CCWWGG 1 cut(s) 2587
Bst2UI CCWGG 3 cut(s) 128, 1394, 3009
Bst6I CTCTTC 2 cut(s) 1035, 2336
BstACI GRCGYC 1 cut(s) 2444
BstBAI YACGTR 1 cut(s) 1223
BstC8I GCNNGC 5 cut(s) 370, 624, 1636, 1854, 1890
BstDEI CTNAG 9 cut(s) 192, 813, 1046, 1368, 1458, 1893, 2079, 2363, 2646
BstEII GGTNACC 2 cut(s) 337, 1603
BstENI CCTNNNNNAGG 2 cut(s) 373, 1639
BstFNI CGCG 1 cut(s) 2914
BstMAI GTCTC 5 cut(s) 458, 1133, 1157, 1724, 2977
BstMCI CGRYCG 1 cut(s) 2487
BstNI CCWGG 3 cut(s) 128, 1394, 3009
BstNSI RCATGY 6 cut(s) 296, 499, 1562, 1765, 2404, 2464
BstPI GGTNACC 2 cut(s) 337, 1603
BstSCI CCNGG 8 cut(s) 126, 974, 1077, 1310, 1392, 2240, 3007, 3025
BstSLI GKGCMC 2 cut(s) 2526, 2856
BstUI CGCG 1 cut(s) 2914
BstV1I GCAGC 5 cut(s) 645, 802, 2068, 2707, 2874
BstX2I RGATCY 1 cut(s) 2607
BstYI RGATCY 1 cut(s) 2607
BtsI GCAGTG 2 cut(s) 1059, 2834
BtsIMutI CAGTG 5 cut(s) 578, 852, 1059, 1844, 2834
Cac8I GCNNGC 5 cut(s) 370, 624, 1636, 1854, 1890
CaiI CAGNNNCTG 2 cut(s) 661, 1927
CciI TCATGA 6 cut(s) 1111, 1297, 2737, 2791, 2845, 2869
Cfr10I RCCGGY 1 cut(s) 1902
Cfr13I GGNCC 8 cut(s) 378, 1644, 2522, 2523, 2616, 2852, 2853, 3029
Csp6I GTAC 8 cut(s) 196, 257, 499, 917, 1462, 1523, 1765, 2183
CviQI GTAC 8 cut(s) 196, 257, 499, 917, 1462, 1523, 1765, 2183
DdeI CTNAG 9 cut(s) 192, 813, 1046, 1368, 1458, 1893, 2079, 2363, 2646
DrdI GACNNNNNNGTC 1 cut(s) 2425
DriI GACNNNNNGTC 1 cut(s) 2443
DseDI GACNNNNNNGTC 1 cut(s) 2425
EaeI YGGCCR 1 cut(s) 2301
Eam1104I CTCTTC 2 cut(s) 1035, 2336
Eam1105I GACNNNNNGTC 1 cut(s) 2443
EarI CTCTTC 2 cut(s) 1035, 2336
EciI GGCGGA 1 cut(s) 2260
Eco130I CCWWGG 1 cut(s) 2587
Eco24I GRGCYC 2 cut(s) 2526, 2856
Eco31I GGTCTC 3 cut(s) 458, 1724, 2977
Eco47I GGWCC 2 cut(s) 2616, 3029
Eco72I CACGTG 1 cut(s) 1223
Eco88I CYCGRG 4 cut(s) 722, 823, 1988, 2089
Eco91I GGTNACC 2 cut(s) 337, 1603
EcoNI CCTNNNNNAGG 2 cut(s) 373, 1639
EcoO109I RGGNCCY 3 cut(s) 378, 1644, 2853
EcoO65I GGTNACC 2 cut(s) 337, 1603
EcoRII CCWGG 3 cut(s) 126, 1392, 3007
EcoT14I CCWWGG 1 cut(s) 2587
EcoT38I GRGCYC 2 cut(s) 2526, 2856
ErhI CCWWGG 1 cut(s) 2587
FaqI GGGAC 4 cut(s) 991, 1061, 2257, 2394
FauI CCCGC 2 cut(s) 1857, 2865
FbaI TGATCA 7 cut(s) 2311, 2734, 2776, 2788, 2842, 2866, 2872
FblI GTMKAC 2 cut(s) 801, 2067
FriOI GRGCYC 2 cut(s) 2526, 2856
GsaI CCCAGC 5 cut(s) 601, 707, 1867, 1973, 2972
HapII CCGG 7 cut(s) 975, 1079, 1311, 1903, 2241, 2771, 3027
Hin1I GRCGYC 1 cut(s) 2444
HincII GTYRAC 4 cut(s) 322, 775, 1588, 2041
HindII GTYRAC 4 cut(s) 322, 775, 1588, 2041
HindIII AAGCTT 2 cut(s) 620, 1886
HinfI GANTC 6 cut(s) 138, 688, 1404, 1954, 2369, 2666
HpaII CCGG 7 cut(s) 975, 1079, 1311, 1903, 2241, 2771, 3027
Hpy188I TCNGA 8 cut(s) 193, 290, 388, 892, 1459, 1654, 2158, 2616
Hpy99I CGWCG 4 cut(s) 747, 2013, 2827, 2833
HpyCH4IV ACGT 5 cut(s) 183, 1222, 1273, 1449, 2444
HpyF3I CTNAG 9 cut(s) 192, 813, 1046, 1368, 1458, 1893, 2079, 2363, 2646
HpySE526I ACGT 5 cut(s) 183, 1222, 1273, 1449, 2444
Hsp92I GRCGYC 1 cut(s) 2444
KpnI GGTACC 2 cut(s) 260, 1526
Ksp22I TGATCA 7 cut(s) 2311, 2734, 2776, 2788, 2842, 2866, 2872
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 5 cut(s) 523, 1789, 2273, 2947, 3004
Lsp1109I GCAGC 5 cut(s) 645, 802, 2068, 2707, 2874
LweI GCATC 9 cut(s) 535, 611, 649, 1090, 1105, 1398, 1801, 1877, 1915
MaeII ACGT 5 cut(s) 183, 1222, 1273, 1449, 2444
MbiI CCGCTC 2 cut(s) 858, 2124
MboII GAAGA 7 cut(s) 128, 161, 1052, 1394, 1427, 2353, 2586
MflI RGATCY 1 cut(s) 2607
MhlI GDGCHC 3 cut(s) 2458, 2526, 2856
MlsI TGGCCA 1 cut(s) 2303
MluCI AATT 7 cut(s) 15, 42, 170, 879, 1436, 2145, 2188
MluNI TGGCCA 1 cut(s) 2303
MlyI GAGTC 2 cut(s) 147, 1413
MmeI TCCRAC 2 cut(s) 501, 1767
Mox20I TGGCCA 1 cut(s) 2303
MscI TGGCCA 1 cut(s) 2303
MseI TTAA 2 cut(s) 882, 2148
MslI CAYNNNNRTG 7 cut(s) 2319, 2399, 2465, 2471, 2784, 2790, 2844
Msp20I TGGCCA 1 cut(s) 2303
MspA1I CMGCKG 4 cut(s) 658, 1852, 2728, 2887
MspI CCGG 7 cut(s) 975, 1079, 1311, 1903, 2241, 2771, 3027
MspR9I CCNGG 8 cut(s) 128, 976, 1079, 1312, 1394, 2242, 3009, 3027
MvaI CCWGG 3 cut(s) 128, 1394, 3009
MvnI CGCG 1 cut(s) 2914
NciI CCSGG 5 cut(s) 976, 1079, 1312, 2242, 3027
NspI RCATGY 6 cut(s) 296, 499, 1562, 1765, 2404, 2464
PagI TCATGA 6 cut(s) 1111, 1297, 2737, 2791, 2845, 2869
PciI ACATGT 5 cut(s) 292, 495, 1558, 1761, 2460
PciSI GCTCTTC 1 cut(s) 1035
PfeI GAWTC 4 cut(s) 688, 1954, 2369, 2666
PfoI TCCNGGA 1 cut(s) 1077
Ple19I CGATCG 1 cut(s) 2487
PleI GAGTC 2 cut(s) 146, 1412
PmaCI CACGTG 1 cut(s) 1223
PmlI CACGTG 1 cut(s) 1223
PpsI GAGTC 2 cut(s) 146, 1412
Ppu21I YACGTR 1 cut(s) 1223
PscI ACATGT 5 cut(s) 292, 495, 1558, 1761, 2460
PsiI TTATAA 3 cut(s) 2576, 2919, 2937
Psp6I CCWGG 3 cut(s) 126, 1392, 3007
PspCI CACGTG 1 cut(s) 1223
PspEI GGTNACC 2 cut(s) 337, 1603
PspFI CCCAGC 5 cut(s) 597, 703, 1863, 1969, 2968
PspGI CCWGG 3 cut(s) 126, 1392, 3007
PspOMI GGGCCC 2 cut(s) 2522, 2852
PspPI GGNCC 8 cut(s) 378, 1644, 2522, 2523, 2616, 2852, 2853, 3029
PsrI GAACNNNNNNTAC 2 cut(s) 2318, 2350
PstI CTGCAG 2 cut(s) 837, 2103
PstNI CAGNNNCTG 2 cut(s) 661, 1927
PsuI RGATCY 1 cut(s) 2607
PvuI CGATCG 1 cut(s) 2487
PvuII CAGCTG 3 cut(s) 658, 2728, 2887
RsaI GTAC 8 cut(s) 197, 258, 500, 918, 1463, 1524, 1766, 2184
RsaNI GTAC 8 cut(s) 196, 257, 499, 917, 1462, 1523, 1765, 2183
RseI CAYNNNNRTG 7 cut(s) 2319, 2399, 2465, 2471, 2784, 2790, 2844
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 2 cut(s) 882, 2148
Sau96I GGNCC 8 cut(s) 378, 1644, 2522, 2523, 2616, 2852, 2853, 3029
SchI GAGTC 2 cut(s) 147, 1413
ScrFI CCNGG 8 cut(s) 128, 976, 1079, 1312, 1394, 2242, 3009, 3027
SduI GDGCHC 3 cut(s) 2458, 2526, 2856
SfaNI GCATC 9 cut(s) 535, 611, 649, 1090, 1105, 1398, 1801, 1877, 1915
SinI GGWCC 2 cut(s) 2616, 3029
SmiMI CAYNNNNRTG 7 cut(s) 2319, 2399, 2465, 2471, 2784, 2790, 2844
SmlI CTYRAG 3 cut(s) 373, 1639, 2275
SmoI CTYRAG 3 cut(s) 373, 1639, 2275
Sse9I AATT 7 cut(s) 15, 42, 170, 879, 1436, 2145, 2188
SspI AATATT 2 cut(s) 484, 1750
StyD4I CCNGG 8 cut(s) 126, 974, 1077, 1310, 1392, 2240, 3007, 3025
StyI CCWWGG 1 cut(s) 2587
TaiI ACGT 5 cut(s) 186, 1225, 1276, 1452, 2447
TasI AATT 7 cut(s) 15, 42, 170, 879, 1436, 2145, 2188
TatI WGTACW 4 cut(s) 195, 498, 1461, 1764
TauI GCSGC 7 cut(s) 50, 213, 1479, 2571, 2764, 2767, 2770
TfiI GAWTC 4 cut(s) 688, 1954, 2369, 2666
Tru1I TTAA 2 cut(s) 882, 2148
Tru9I TTAA 2 cut(s) 882, 2148
TscAI CASTG 5 cut(s) 578, 852, 1059, 1844, 2841
TseI GCWGC 5 cut(s) 658, 790, 2056, 2695, 2887
TspDTI ATGAA 9 cut(s) 17, 162, 215, 470, 1286, 1428, 1481, 1736, 2455
TspGWI ACGGA 5 cut(s) 760, 934, 2026, 2200, 2525
TspRI CASTG 5 cut(s) 578, 852, 1059, 1844, 2841
VpaK11BI GGWCC 2 cut(s) 2616, 3029
XagI CCTNNNNNAGG 2 cut(s) 373, 1639
XapI RAATTY 2 cut(s) 170, 1436
XceI RCATGY 6 cut(s) 296, 499, 1562, 1765, 2404, 2464
XmaJI CCTAGG 1 cut(s) 2587
XmiI GTMKAC 2 cut(s) 801, 2067
ZraI GACGTC 1 cut(s) 2445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.