Rh5CG095100

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002649
Physical Location & Seq
Reverse (-)
7513526 .. 7514464
939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG095100.1

Sequence Viewer

Length: 465 bp
ATGTTGCCTGCAACAGTGAGAAATGCACTAAGGAAGAGGCTAGAGCCGCACAACAGTAAGAGCTCGACTTCATCAGTTTATGATGAAGGTGTTTCAGGAGAGTGGAATGAGGCAGTCTCAGGGATATTAGAATGGTTGGAGCCACTTTCTCATAATATGATAAGCTGGAAACCCAAGAACAGACATATGCTTCTGGTACAAACCCTGTACTTTGCAAATCAACAAAAGACAGAAGCAACAATTACTGAACTTCTAGTTGGTTTGCATTACATGTGGAAATTTAGATATCATGTTCTGAGCATTCCAAAGCAACTTCTTTCCCCTCAAATTTCTGGTTTGCAAAAGGATCAGGACCCAGACGGAGAGTCAAATACCGCTGCTGTGGCAAAGCAGCAACTGCAGGTGCTCAGGACAAATTTGAAGACAATACTCATTCAGGGGGCTGGAGTCACTAGTTCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

154

Amino Acids

17.29

Weight (kDa)

9.22

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF668 PF05003 1 - 54 1.2e-10 Protein of unknown function (DUF668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 391
Acc36I ACCTGC 1 cut(s) 391
AciI CCGC 2 cut(s) 47, 375
AclWI GGATC 1 cut(s) 354
AcsI RAATTY 3 cut(s) 278, 327, 415
AfaI GTAC 2 cut(s) 198, 209
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 1 cut(s) 421
AhdI GACNNNNNGTC 1 cut(s) 364
AhlI ACTAGT 1 cut(s) 452
AjuI GAANNNNNNNTTGG 2 cut(s) 240, 272
AluBI AGCT 2 cut(s) 63, 165
AluI AGCT 2 cut(s) 63, 165
Alw21I GWGCWC 2 cut(s) 65, 408
Alw26I GTCTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 397
ApeKI GCWGC 2 cut(s) 377, 391
ApoI RAATTY 3 cut(s) 278, 327, 415
AspS9I GGNCC 1 cut(s) 352
AvaII GGWCC 1 cut(s) 352
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 428
Bbv12I GWGCWC 2 cut(s) 65, 408
BbvI GCAGC 2 cut(s) 364, 403
BcoDI GTCTC 1 cut(s) 121
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 41, 254, 453
BfmI CTRYAG 1 cut(s) 398
BfuAI ACCTGC 1 cut(s) 391
BisI GCNGC 3 cut(s) 47, 378, 392
BlsI GCNGC 3 cut(s) 48, 379, 393
Bme18I GGWCC 1 cut(s) 352
BmeRI GACNNNNNGTC 1 cut(s) 364
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 2 cut(s) 141, 354
BpiI GAAGAC 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 1 cut(s) 407
BseMII CTCAG 3 cut(s) 132, 287, 421
BseXI GCAGC 2 cut(s) 364, 403
BsiHKAI GWGCWC 2 cut(s) 65, 408
BsmAI GTCTC 1 cut(s) 121
BsmI GAATGC 1 cut(s) 300
Bsp1286I GDGCHC 2 cut(s) 65, 408
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 2 cut(s) 47, 375
BspCNI CTCAG 3 cut(s) 131, 288, 420
BspLI GGNNCC 2 cut(s) 141, 354
BspMAI CTGCAG 1 cut(s) 402
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 1 cut(s) 354
BssMI GATC 1 cut(s) 346
Bst4CI ACNGT 2 cut(s) 16, 56
Bst6I CTCTTC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 4 cut(s) 29, 118, 296, 407
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 121
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 3 cut(s) 46, 383, 397
BstNSI RCATGY 1 cut(s) 274
BstSFI CTRYAG 1 cut(s) 398
BstV1I GCAGC 2 cut(s) 364, 403
BstV2I GAAGAC 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 21
BveI ACCTGC 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 9
CaiI CAGNNNCTG 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 2 cut(s) 197, 208
CviAII CATG 3 cut(s) 271, 290, 462
CviJI RGCY 6 cut(s) 40, 46, 63, 142, 165, 443
CviKI_1 RGCY 6 cut(s) 40, 46, 63, 142, 165, 443
CviQI GTAC 2 cut(s) 197, 208
DdeI CTNAG 4 cut(s) 29, 118, 296, 407
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
DriI GACNNNNNGTC 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 29
Eam1105I GACNNNNNGTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 287
Eco47I GGWCC 1 cut(s) 352
Eco53kI GAGCTC 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 352
EcoRV GATATC 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 65
FaeI CATG 3 cut(s) 274, 293, 465
FaiI YATR 8 cut(s) 81, 153, 158, 186, 188, 272, 291, 463
FatI CATG 3 cut(s) 270, 289, 461
FauNDI CATATG 1 cut(s) 186
Fnu4HI GCNGC 3 cut(s) 47, 378, 392
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 3 cut(s) 47, 378, 392
FspBI CTAG 3 cut(s) 41, 254, 453
GluI GCNGC 3 cut(s) 47, 378, 392
GsuI CTGGAG 1 cut(s) 465
Hin1II CATG 3 cut(s) 274, 293, 465
HinfI GANTC 2 cut(s) 365, 447
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 3 cut(s) 96, 350, 409
HpyAV CCTTC 1 cut(s) 80
HpyCH4III ACNGT 2 cut(s) 16, 56
HpyCH4V TGCA 7 cut(s) 11, 26, 215, 265, 340, 400, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 383, 397
HpyF3I CTNAG 4 cut(s) 29, 118, 296, 407
Hsp92II CATG 3 cut(s) 274, 293, 465
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 2 cut(s) 364, 403
MaeI CTAG 3 cut(s) 41, 254, 453
MaeIII GTNAC 1 cut(s) 448
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 2 cut(s) 46, 433
MhlI GDGCHC 2 cut(s) 65, 408
MluCI AATT 4 cut(s) 240, 278, 327, 415
MlyI GAGTC 2 cut(s) 374, 456
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 3 cut(s) 30, 103, 333
MspA1I CMGCKG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 300
MwoI GCNNNNNNNGC 3 cut(s) 46, 383, 397
NdeI CATATG 1 cut(s) 186
NdeII GATC 1 cut(s) 346
NlaIII CATG 3 cut(s) 274, 293, 465
NlaIV GGNNCC 2 cut(s) 141, 354
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 391
PciI ACATGT 1 cut(s) 270
PctI GAATGC 1 cut(s) 300
PkrI GCNGC 3 cut(s) 48, 379, 393
PleI GAGTC 2 cut(s) 373, 455
PpsI GAGTC 2 cut(s) 373, 455
PpuMI RGGWCCY 1 cut(s) 352
PscI ACATGT 1 cut(s) 270
Psp124BI GAGCTC 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 352
PspN4I GGNNCC 2 cut(s) 141, 354
PspPI GGNCC 1 cut(s) 352
PspPPI RGGWCCY 1 cut(s) 352
PstI CTGCAG 1 cut(s) 402
PstNI CAGNNNCTG 1 cut(s) 397
RsaI GTAC 2 cut(s) 198, 209
RsaNI GTAC 2 cut(s) 197, 208
SacI GAGCTC 1 cut(s) 65
SatI GCNGC 3 cut(s) 47, 378, 392
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 2 cut(s) 374, 456
SduI GDGCHC 2 cut(s) 65, 408
SetI ASST 4 cut(s) 65, 91, 167, 405
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 352
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 4 cut(s) 240, 278, 327, 415
SsiI CCGC 2 cut(s) 47, 375
SspMI CTAG 3 cut(s) 41, 254, 453
SstI GAGCTC 1 cut(s) 65
TaaI ACNGT 2 cut(s) 16, 56
TaqI TCGA 1 cut(s) 65
TasI AATT 4 cut(s) 240, 278, 327, 415
TatI WGTACW 1 cut(s) 207
TauI GCSGC 1 cut(s) 49
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 377, 391
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 2 cut(s) 60, 99
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 3 cut(s) 278, 327, 415
XceI RCATGY 1 cut(s) 274
XspI CTAG 3 cut(s) 41, 254, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.