Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004592

Physical Location & Seq

Genomic Coordinates Reverse (-)

27943416 .. 27944548

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G279900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCTAGAGCCTCTTTTTTTTTGCTGCTACTTCCCATTTTCTACTTTGTTGGCACAGCCAACTCTACAGCCACAACAAGTGATACAAATTTCATAAAGAGCTCGTGCAGCGCCACCACCTACCCACAAGTCTGCATCCAATCCCTCTCTTCCTACGCCACTTCAATCCAGCAAAGCCCTCGGCAGCTGGCCCAGGCTGCCCTGTCCGTGAGCCTAACCAGGGCTCAAAAGGCCAAGACATTTGTGACCAAGTTGGCCAAATTTAAGGGGCTGAAGGCTAGGGAGTACGGAGCTGTCAAGGACTGCTTGGAGGAGATGGGTGATACCGTGGACAGGCTCAGCAAATCAGTCCAGGAGCTAAAGAACATGGGCAAATCCAAGGGCCAGGATTTCGTGTGGCACATGAGCAATGTGGAGACTTGGGTTAGTGCTGCTTTGACTGATGACAATACTTGCCTTGATGGGTTCTCTGGCAAGGCCTTGGATGGCAAAATCAAGGCCTCAATCAGAGCTCAGGTGCTTAATGTTGCACAGTGCACTAGCAATGCTTTGGCCTTGTGCAACAGGTTTGCCTCCAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0008150 GO:0009987 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0048046 GO:0050790 GO:0065007 GO:0065009 GO:0071554 GO:0071669 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

195

Amino Acids

21.07

Weight (kDa)

9.37

Isoelectric Point (pI)

24.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62770 AT4G12390
fragaria_vesca	FvH4_5g00430 FvH4_7g27850
malus_domestica	MD00G1105000.v1.1 MD04G1081200.v1.1 MD07G1255800.v1.1
prunus_persica	Prupe.2G279900_v2.0.a1 Prupe.5G076900_v2.0.a1
pyrus_communis	pycom06g05600
rosa_chinensis	RchiOBHm_Chr1g0374721 RchiOBHm_Chr7g0202081
rosa_laevigata	RLG00000003627 RLG00000026718
rosa_multiflora	Rmu_co8511593.1_g000001 Rmu_sc0002063.1_g000001 Rmu_sc0006592.1_g000011 Rmu_sc0010587.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283280
rosa_rugosa	Rorug01G0384600 Rorug07G0067800
rosa_samantha	Rh1AG396200 Rh1BG360300 Rh1CG373700 Rh1DG391300 Rh7AG195300 Rh7BG196600 Rh7CG206400 Rh7DG201900
rosa_wichuraiana	Rw1G035130 Rw7G017100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	2 cut(s)	88, 260
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	220, 333
AgsI	TTSAA	1 cut(s)	165
AjnI	CCWGG	4 cut(s)	192, 218, 351, 384
AluBI	AGCT	5 cut(s)	102, 187, 293, 358, 512
AluI	AGCT	5 cut(s)	102, 187, 293, 358, 512
Alw21I	GWGCWC	3 cut(s)	104, 514, 539
Alw26I	GTCTC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	535
AoxI	GGCC	7 cut(s)	189, 231, 255, 382, 477, 498, 552
ApaLI	GTGCAC	1 cut(s)	535
ApeKI	GCWGC	5 cut(s)	25, 108, 184, 197, 431
ApoI	RAATTY	2 cut(s)	88, 260
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	190, 382
AsuHPI	GGTGA	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	257
BanII	GRGCYC	3 cut(s)	104, 226, 514
BauI	CACGAG	1 cut(s)	103
Bbv12I	GWGCWC	3 cut(s)	104, 514, 539
BbvI	GCAGC	5 cut(s)	12, 120, 184, 196, 418
BccI	CCATC	3 cut(s)	310, 455, 479
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	4 cut(s)	194, 220, 353, 386
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	3 cut(s)	6, 279, 540
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	5 cut(s)	26, 109, 185, 198, 432
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	5 cut(s)	27, 110, 186, 199, 433
Bme1390I	CCNGG	4 cut(s)	194, 220, 353, 386
BmgT120I	GGNCC	2 cut(s)	190, 382
BmrFI	CCNGG	4 cut(s)	194, 220, 353, 386
BmsI	GCATC	1 cut(s)	144
Bpu10I	CCTNAGC	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	338
BsaJI	CCNNGG	6 cut(s)	179, 192, 219, 327, 378, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 333
Bse3DI	GCAATG	2 cut(s)	415, 550
BseBI	CCWGG	4 cut(s)	194, 220, 353, 386
BseDI	CCNNGG	6 cut(s)	179, 192, 219, 327, 378, 480
BseGI	GGATG	2 cut(s)	135, 490
BseLI	CCNNNNNNNGG	2 cut(s)	220, 333
BseMI	GCAATG	2 cut(s)	415, 550
BseMII	CTCAG	2 cut(s)	352, 527
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	5 cut(s)	12, 120, 184, 196, 418
BsgI	GTGCAG	1 cut(s)	127
BshFI	GGCC	7 cut(s)	191, 233, 257, 384, 479, 500, 554
BsiHKAI	GWGCWC	3 cut(s)	104, 514, 539
BslI	CCNNNNNNNGG	2 cut(s)	220, 333
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	7 cut(s)	191, 233, 257, 384, 479, 500, 554
Bsp1286I	GDGCHC	4 cut(s)	104, 226, 514, 539
Bsp1720I	GCTNAGC	1 cut(s)	338
BspANI	GGCC	7 cut(s)	191, 233, 257, 384, 479, 500, 554
BspCNI	CTCAG	2 cut(s)	351, 526
BsrDI	GCAATG	2 cut(s)	415, 550
BssECI	CCNNGG	6 cut(s)	179, 192, 219, 327, 378, 480
BssSI	CACGAG	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	378, 480
Bst2BI	CACGAG	1 cut(s)	103
Bst2UI	CCWGG	4 cut(s)	194, 220, 353, 386
Bst4CI	ACNGT	2 cut(s)	328, 534
Bst6I	CTCTTC	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	2 cut(s)	338, 513
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	2 cut(s)	135, 490
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstMAI	GTCTC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 197, 230
BstNI	CCWGG	4 cut(s)	194, 220, 353, 386
BstSCI	CCNGG	4 cut(s)	192, 218, 351, 384
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	539
BstV1I	GCAGC	5 cut(s)	12, 120, 184, 196, 418
BsuRI	GGCC	7 cut(s)	191, 233, 257, 384, 479, 500, 554
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	2 cut(s)	135, 490
BtsIMutI	CAGTG	2 cut(s)	539, 580
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	190, 382
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	2 cut(s)	367, 403
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	338, 513
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	2 cut(s)	102, 512
Eco130I	CCWWGG	2 cut(s)	378, 480
Eco147I	AGGCCT	2 cut(s)	479, 500
Eco24I	GRGCYC	3 cut(s)	104, 226, 514
Eco53kI	GAGCTC	2 cut(s)	102, 512
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	2 cut(s)	102, 512
EcoRII	CCWGG	4 cut(s)	192, 218, 351, 384
EcoT14I	CCWWGG	2 cut(s)	378, 480
EcoT38I	GRGCYC	3 cut(s)	104, 226, 514
ErhI	CCWWGG	2 cut(s)	378, 480
FaeI	CATG	2 cut(s)	370, 406
FaiI	YATR	3 cut(s)	95, 368, 404
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	366, 402
Fnu4HI	GCNGC	5 cut(s)	26, 109, 185, 198, 432
FokI	GGATG	2 cut(s)	122, 497
FriOI	GRGCYC	3 cut(s)	104, 226, 514
Fsp4HI	GCNGC	5 cut(s)	26, 109, 185, 198, 432
FspBI	CTAG	3 cut(s)	6, 279, 540
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	5 cut(s)	26, 109, 185, 198, 432
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	7 cut(s)	191, 233, 257, 384, 479, 500, 554
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	370, 406
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	2 cut(s)	331, 537
Hpy188I	TCNGA	1 cut(s)	509
Hpy8I	GTNNAC	2 cut(s)	331, 537
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	328, 534
HpyCH4V	TGCA	5 cut(s)	108, 135, 530, 537, 561
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 197, 230
HpyF3I	CTNAG	2 cut(s)	338, 513
Hsp92II	CATG	2 cut(s)	370, 406
HspAI	GCGC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	290, 355
Lsp1109I	GCAGC	5 cut(s)	12, 120, 184, 196, 418
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	3 cut(s)	6, 279, 540
MaeIII	GTNAC	1 cut(s)	244
MboII	GAAGA	1 cut(s)	141
MhlI	GDGCHC	4 cut(s)	104, 226, 514, 539
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	2 cut(s)	88, 260
MluNI	TGGCCA	1 cut(s)	257
MnlI	CCTC	6 cut(s)	22, 155, 189, 304, 511, 583
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	2 cut(s)	264, 522
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	1 cut(s)	187
MspR9I	CCNGG	4 cut(s)	194, 220, 353, 386
MvaI	CCWGG	4 cut(s)	194, 220, 353, 386
MwoI	GCNNNNNNNGC	3 cut(s)	108, 197, 230
NlaIII	CATG	2 cut(s)	370, 406
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	244
PceI	AGGCCT	2 cut(s)	479, 500
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	5 cut(s)	27, 110, 186, 199, 433
Psp124BI	GAGCTC	2 cut(s)	104, 514
Psp6I	CCWGG	4 cut(s)	192, 218, 351, 384
PspGI	CCWGG	4 cut(s)	192, 218, 351, 384
PspPI	GGNCC	2 cut(s)	190, 382
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacI	GAGCTC	2 cut(s)	104, 514
SaqAI	TTAA	2 cut(s)	264, 522
SatI	GCNGC	5 cut(s)	26, 109, 185, 198, 432
Sau96I	GGNCC	2 cut(s)	190, 382
ScrFI	CCNGG	4 cut(s)	194, 220, 353, 386
SduI	GDGCHC	4 cut(s)	104, 226, 514, 539
SetI	ASST	8 cut(s)	104, 122, 189, 295, 360, 514, 519, 569
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	66
Sse9I	AATT	2 cut(s)	88, 260
SseBI	AGGCCT	2 cut(s)	479, 500
SspMI	CTAG	3 cut(s)	6, 279, 540
SstI	GAGCTC	2 cut(s)	104, 514
StuI	AGGCCT	2 cut(s)	479, 500
StyD4I	CCNGG	4 cut(s)	192, 218, 351, 384
StyI	CCWWGG	2 cut(s)	378, 480
TaaI	ACNGT	2 cut(s)	328, 534
TasI	AATT	2 cut(s)	88, 260
Tru1I	TTAA	2 cut(s)	264, 522
Tru9I	TTAA	2 cut(s)	264, 522
TscAI	CASTG	1 cut(s)	539
TseFI	GTSAC	1 cut(s)	244
TseI	GCWGC	5 cut(s)	25, 108, 184, 197, 431
Tsp45I	GTSAC	1 cut(s)	244
TspDTI	ATGAA	1 cut(s)	82
TspGWI	ACGGA	2 cut(s)	196, 303
TspRI	CASTG	1 cut(s)	539
VneI	GTGCAC	1 cut(s)	535
XapI	RAATTY	2 cut(s)	88, 260
XspI	CTAG	3 cut(s)	6, 279, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.