Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8511593.1

Orthogroup ID

OG0004592

Physical Location & Seq

Genomic Coordinates Forward (+)

959 .. 1660

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8511593.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgctcaccaatcccatcccctctataaatacaccatccccctcatcctcatcctcaaacctcaactttcccaatcagtcccttactctgtcatccctactccaactcagcctcataacaatggctagatcctccattctctttctacttcttgccctcttcgccctcaccgccaactctgcttccaccaccactgcctccaacttcgtcaaaacctcatgcagcaccaccacctaccctgacctctgcgttcagtccctctcatcattctccaccgcgatccagcaaagccctcgccagctggcgcagaccgccctctccgtcagcctcacccgagcccagttcgccaagtccttcgtcaccaagctgaccaagttcaaaggtttgagccacaaggagtacgaggccatcgacgactgccttgaggagatgggtgacagcgtcgaccggctgagcaagtccgtggacgagctgaagaagatggggaagtcatccaagggccaggatttcttatggcacatgagcaatgtcgagacttgggtcagcgctgcgttgacagacgacaacacttgccttgatgggttctccgggaaggccatgaatggcaagatcaaggcctccattagagctcaggtgcttaatgttgctaaggttactagtaatgctctggccctttgcaaccactttgcctccaaatactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0005575 GO:0005576 GO:0008150 GO:0009987 GO:0030234 GO:0043086 GO:0044092 GO:0046910 GO:0048046 GO:0050790 GO:0065007 GO:0065009 GO:0071554 GO:0071669 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

233

Amino Acids

25.13

Weight (kDa)

8.97

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62770 AT4G12390
fragaria_vesca	FvH4_5g00430 FvH4_7g27850
malus_domestica	MD00G1105000.v1.1 MD04G1081200.v1.1 MD07G1255800.v1.1
prunus_persica	Prupe.2G279900_v2.0.a1 Prupe.5G076900_v2.0.a1
pyrus_communis	pycom06g05600
rosa_chinensis	RchiOBHm_Chr1g0374721 RchiOBHm_Chr7g0202081
rosa_laevigata	RLG00000003627 RLG00000026718
rosa_multiflora	Rmu_co8511593.1_g000001 Rmu_sc0002063.1_g000001 Rmu_sc0006592.1_g000011 Rmu_sc0010587.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283280
rosa_rugosa	Rorug01G0384600 Rorug07G0067800
rosa_samantha	Rh1AG396200 Rh1BG360300 Rh1CG373700 Rh1DG391300 Rh7AG195300 Rh7BG196600 Rh7CG206400 Rh7DG201900
rosa_wichuraiana	Rw1G035130 Rw7G017100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	278
AciI	CCGC	3 cut(s)	171, 276, 312
AclWI	GGATC	2 cut(s)	123, 274
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	1 cut(s)	401
AfeI	AGCGCT	1 cut(s)	547
AgsI	TTSAA	1 cut(s)	379
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	301, 367, 472, 629
AluI	AGCT	4 cut(s)	301, 367, 472, 629
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	123, 274
Ama87I	CYCGRG	1 cut(s)	333
Aor51HI	AGCGCT	1 cut(s)	547
AoxI	GGCC	5 cut(s)	405, 499, 594, 615, 669
ApeKI	GCWGC	2 cut(s)	222, 548
AspLEI	GCGC	2 cut(s)	307, 548
AspS9I	GGNCC	2 cut(s)	499, 670
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	4 cut(s)	160, 322, 352, 446
AvaI	CYCGRG	1 cut(s)	333
BanII	GRGCYC	2 cut(s)	340, 631
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	2 cut(s)	234, 535
BccI	CCATC	6 cut(s)	23, 43, 416, 424, 475, 572
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	527
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	2 cut(s)	126, 657
BfoI	RGCGCY	1 cut(s)	549
BisI	GCNGC	2 cut(s)	223, 549
BlpI	GCTNAGC	1 cut(s)	452
BlsI	GCNGC	2 cut(s)	224, 550
Bme1390I	CCNGG	2 cut(s)	503, 589
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	2 cut(s)	499, 670
BmrFI	CCNGG	2 cut(s)	503, 589
BmrI	ACTGGG	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	539
Bpu10I	CCTNAGC	2 cut(s)	630, 648
Bpu1102I	GCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	443
BpuMI	CCSGG	1 cut(s)	589
BsaJI	CCNNGG	2 cut(s)	462, 495
BsaXI	ACNNNNNCTCC	1 cut(s)	674
Bse118I	RCCGGY	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	462, 495
BseGI	GGATG	6 cut(s)	15, 35, 44, 50, 92, 491
BseMI	GCAATG	1 cut(s)	532
BseMII	CTCAG	3 cut(s)	121, 443, 644
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	234, 535
Bsh1236I	CGCG	1 cut(s)	278
Bsh1285I	CGRYCG	1 cut(s)	448
BshFI	GGCC	5 cut(s)	407, 501, 596, 617, 671
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	448, 588
BslFI	GGGAC	2 cut(s)	64, 241
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	2 cut(s)	64, 241
BsnI	GGCC	5 cut(s)	407, 501, 596, 617, 671
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	2 cut(s)	340, 631
Bsp143I	GATC	3 cut(s)	128, 279, 609
Bsp1720I	GCTNAGC	1 cut(s)	452
BspACI	CCGC	3 cut(s)	171, 276, 312
BspANI	GGCC	5 cut(s)	407, 501, 596, 617, 671
BspCNI	CTCAG	3 cut(s)	120, 444, 643
BspFNI	CGCG	1 cut(s)	278
BspPI	GGATC	2 cut(s)	123, 274
BsrDI	GCAATG	1 cut(s)	532
BsrFI	RCCGGY	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	340
BssAI	RCCGGY	1 cut(s)	447
BssECI	CCNNGG	2 cut(s)	462, 495
BssMI	GATC	3 cut(s)	128, 279, 609
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	164
BstC8I	GCNNGC	2 cut(s)	299, 303
BstDEI	CTNAG	4 cut(s)	107, 452, 630, 648
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	6 cut(s)	15, 35, 44, 50, 92, 491
BstFNI	CGCG	1 cut(s)	278
BstH2I	RGCGCY	1 cut(s)	549
BstHHI	GCGC	2 cut(s)	307, 548
BstKTI	GATC	3 cut(s)	131, 282, 612
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	3 cut(s)	128, 279, 609
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 170, 179, 311, 344
BstNI	CCWGG	1 cut(s)	503
BstPAI	GACNNNNGTC	1 cut(s)	539
BstSCI	CCNGG	2 cut(s)	501, 587
BstUI	CGCG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	234, 535
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuRI	GGCC	5 cut(s)	407, 501, 596, 617, 671
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	6 cut(s)	15, 35, 44, 50, 92, 491
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	299, 303
CfoI	GCGC	2 cut(s)	307, 548
Cfr10I	RCCGGY	1 cut(s)	447
Cfr13I	GGNCC	2 cut(s)	499, 670
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	400
CviAII	CATG	3 cut(s)	219, 520, 598
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	4 cut(s)	107, 452, 630, 648
DpnI	GATC	3 cut(s)	130, 281, 611
DpnII	GATC	3 cut(s)	128, 279, 609
Eam1104I	CTCTTC	1 cut(s)	164
EarI	CTCTTC	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	629
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	617
Eco24I	GRGCYC	2 cut(s)	340, 631
Eco47III	AGCGCT	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	629
Eco57I	CTGAAG	1 cut(s)	494
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	629
EcoRII	CCWGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	2 cut(s)	340, 631
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	3 cut(s)	222, 523, 601
FaiI	YATR	6 cut(s)	26, 116, 220, 514, 521, 599
FaqI	GGGAC	2 cut(s)	64, 241
FatI	CATG	3 cut(s)	218, 519, 597
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	223, 549
FokI	GGATG	6 cut(s)	2, 22, 31, 37, 79, 478
FriOI	GRGCYC	2 cut(s)	340, 631
Fsp4HI	GCNGC	2 cut(s)	223, 549
FspBI	CTAG	2 cut(s)	126, 657
GlaI	GCGC	2 cut(s)	306, 547
GluI	GCNGC	2 cut(s)	223, 549
HaeII	RGCGCY	1 cut(s)	549
HaeIII	GGCC	5 cut(s)	407, 501, 596, 617, 671
HapII	CCGG	2 cut(s)	448, 588
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	2 cut(s)	307, 548
Hin1II	CATG	3 cut(s)	222, 523, 601
Hin6I	GCGC	2 cut(s)	305, 546
HinP1I	GCGC	2 cut(s)	305, 546
HincII	GTYRAC	2 cut(s)	445, 555
HindII	GTYRAC	2 cut(s)	445, 555
HpaII	CCGG	2 cut(s)	448, 588
HphI	GGTGA	4 cut(s)	160, 322, 352, 446
Hpy166II	GTNNAC	3 cut(s)	445, 466, 555
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	3 cut(s)	445, 466, 555
Hpy99I	CGWCG	2 cut(s)	416, 446
HpyAV	CCTTC	2 cut(s)	364, 586
HpyCH4V	TGCA	2 cut(s)	222, 678
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 170, 179, 311, 344
HpyF3I	CTNAG	4 cut(s)	107, 452, 630, 648
Hsp92II	CATG	3 cut(s)	222, 523, 601
HspAI	GCGC	2 cut(s)	305, 546
Kzo9I	GATC	3 cut(s)	128, 279, 609
Lsp1109I	GCAGC	2 cut(s)	234, 535
MaeI	CTAG	2 cut(s)	126, 657
MaeIII	GTNAC	3 cut(s)	358, 434, 652
MalI	GATC	3 cut(s)	130, 281, 611
MboI	GATC	3 cut(s)	128, 279, 609
MboII	GAAGA	3 cut(s)	151, 487, 490
MflI	RGATCY	1 cut(s)	128
MhlI	GDGCHC	2 cut(s)	340, 631
MmeI	TCCRAC	2 cut(s)	127, 225
MseI	TTAA	1 cut(s)	639
MslI	CAYNNNNRTG	1 cut(s)	119
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	2 cut(s)	448, 588
MspR9I	CCNGG	2 cut(s)	503, 589
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	5 cut(s)	161, 170, 179, 311, 344
NciI	CCSGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	128, 279, 609
NlaIII	CATG	3 cut(s)	222, 523, 601
NmuCI	GTSAC	2 cut(s)	358, 434
PceI	AGGCCT	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PflFI	GACNNNGTC	1 cut(s)	440
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	2 cut(s)	224, 550
PshAI	GACNNNNGTC	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	631
Psp6I	CCWGG	1 cut(s)	501
PspGI	CCWGG	1 cut(s)	501
PspPI	GGNCC	2 cut(s)	499, 670
PsuI	RGATCY	1 cut(s)	128
PsyI	GACNNNGTC	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	301
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	631
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	1 cut(s)	639
SatI	GCNGC	2 cut(s)	223, 549
Sau3AI	GATC	3 cut(s)	128, 279, 609
Sau96I	GGNCC	2 cut(s)	499, 670
ScrFI	CCNGG	2 cut(s)	503, 589
SduI	GDGCHC	2 cut(s)	340, 631
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	656
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	3 cut(s)	171, 276, 312
SspMI	CTAG	2 cut(s)	126, 657
SstI	GAGCTC	1 cut(s)	631
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	2 cut(s)	501, 587
StyI	CCWWGG	1 cut(s)	495
TaqI	TCGA	3 cut(s)	411, 444, 531
Tru1I	TTAA	1 cut(s)	639
Tru9I	TTAA	1 cut(s)	639
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	2 cut(s)	358, 434
TseI	GCWGC	2 cut(s)	222, 548
Tsp45I	GTSAC	2 cut(s)	358, 434
TspDTI	ATGAA	1 cut(s)	614
TspGWI	ACGGA	2 cut(s)	310, 451
TspRI	CASTG	1 cut(s)	199
Tth111I	GACNNNGTC	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	2 cut(s)	126, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.