Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004592

Physical Location & Seq

Genomic Coordinates Reverse (-)

9094726 .. 9096486

Gene Structure 1761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACAAGACTTGGTCTTGGCCTTTCCTTTTTGGTTCTCTTCCATGTTCTTCACATGTTTGGTGCAGCAGACTCCACCATTGCCAGACACTCAAGCCCCACAGCTTTCATCAAAGCCTCATGCAGGGCCACTGATTATCCTGCACTGTGTGTTCAAAGCCTTGCAGGCTACGCAAGTGCCATCGGACAAAGTGAAAGACAGTTAGCTCAAACTGCTTTGACAGTGAGCCTAGCCCGGGTGCGGTCGGCTCAATCCTATGTGGCCAAGTTGACTAGAGTCAGGGGGATCAAGCCTAGGGAGTACAGAGCTGTGAAAGACTGCATAGAGAACATGGGTGATAGCGTCGACCGGCTTCGCCAATCGGTTAGGGAACTTGGCCAGACCGGTCGAGCCGTTGGCCAGGACTTCATGTGGCACATGAGCAATGTGGAGACTTGGGTTAGTGCTGCTCTCACTGATGAAAGCACTTGTCTTGATGGGTTTTCTGGTCGTTTCATGGATGGGAATATAAAGACAGCTATAACAAGAAGGGTCAATAATGTTGCTCAGGTTACTAGCAATGCATTAGCCCTGGTTAATCGCTTTGCTGCAAAACACAAGGCAGCCTCAGCTGCCAAGCAGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

209

Amino Acids

22.61

Weight (kDa)

10.02

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62770 AT4G12390
fragaria_vesca	FvH4_5g00430 FvH4_7g27850
malus_domestica	MD00G1105000.v1.1 MD04G1081200.v1.1 MD07G1255800.v1.1
prunus_persica	Prupe.2G279900_v2.0.a1 Prupe.5G076900_v2.0.a1
pyrus_communis	pycom06g05600
rosa_chinensis	RchiOBHm_Chr1g0374721 RchiOBHm_Chr7g0202081
rosa_laevigata	RLG00000003627 RLG00000026718
rosa_multiflora	Rmu_co8511593.1_g000001 Rmu_sc0002063.1_g000001 Rmu_sc0006592.1_g000011 Rmu_sc0010587.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283280
rosa_rugosa	Rorug01G0384600 Rorug07G0067800
rosa_samantha	Rh1AG396200 Rh1BG360300 Rh1CG373700 Rh1DG391300 Rh7AG195300 Rh7BG196600 Rh7CG206400 Rh7DG201900
rosa_wichuraiana	Rw1G035130 Rw7G017100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	241
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	3 cut(s)	261, 376, 397
AdeI	CACNNNGTG	1 cut(s)	149
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	123, 235, 240
AflIII	ACRYGT	1 cut(s)	54
AgeI	ACCGGT	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	399, 570
AluBI	AGCT	5 cut(s)	104, 206, 308, 518, 611
AluI	AGCT	5 cut(s)	104, 206, 308, 518, 611
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	293
Ama87I	CYCGRG	1 cut(s)	234
AoxI	GGCC	5 cut(s)	19, 126, 261, 376, 397
ApeKI	GCWGC	6 cut(s)	65, 446, 587, 602, 611, 619
AsiGI	ACCGGT	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	2 cut(s)	235, 236
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	234
AvrII	CCTAGG	1 cut(s)	293
BalI	TGGCCA	3 cut(s)	263, 378, 399
BbvCI	CCTCAGC	1 cut(s)	607
BbvI	GCAGC	5 cut(s)	77, 433, 574, 598, 614
BccI	CCATC	3 cut(s)	188, 470, 494
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	2 cut(s)	401, 572
BcnI	CCSGG	2 cut(s)	235, 236
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	4 cut(s)	230, 273, 294, 555
BglI	GCCNNNNNGGC	1 cut(s)	165
BisI	GCNGC	6 cut(s)	66, 447, 588, 603, 612, 620
BlnI	CCTAGG	1 cut(s)	293
BlsI	GCNGC	6 cut(s)	67, 448, 589, 604, 613, 621
Bme1390I	CCNGG	4 cut(s)	235, 236, 401, 572
BmeT110I	CYCGRG	1 cut(s)	234
BmgT120I	GGNCC	1 cut(s)	126
BmrFI	CCNGG	4 cut(s)	235, 236, 401, 572
BoxI	GACNNNNGTC	1 cut(s)	275
Bpu10I	CCTNAGC	2 cut(s)	546, 607
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	2 cut(s)	235, 236
BsaJI	CCNNGG	3 cut(s)	234, 293, 570
BsaWI	WCCGGW	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	3 cut(s)	123, 235, 240
Bse118I	RCCGGY	2 cut(s)	348, 383
Bse3DI	GCAATG	3 cut(s)	78, 430, 565
BseBI	CCWGG	2 cut(s)	401, 572
BseDI	CCNNGG	3 cut(s)	234, 293, 570
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	3 cut(s)	123, 235, 240
BseMI	GCAATG	3 cut(s)	78, 430, 565
BseMII	CTCAG	2 cut(s)	560, 621
BseXI	GCAGC	5 cut(s)	77, 433, 574, 598, 614
BsgI	GTGCAG	2 cut(s)	84, 126
Bsh1285I	CGRYCG	3 cut(s)	245, 349, 388
BshFI	GGCC	5 cut(s)	21, 128, 263, 378, 399
BshTI	ACCGGT	1 cut(s)	383
BsiEI	CGRYCG	3 cut(s)	245, 349, 388
BsiHKCI	CYCGRG	1 cut(s)	234
BsiSI	CCGG	3 cut(s)	235, 349, 384
BslI	CCNNNNNNNGG	3 cut(s)	123, 235, 240
BsmAI	GTCTC	1 cut(s)	425
BsnI	GGCC	5 cut(s)	21, 128, 263, 378, 399
BsoBI	CYCGRG	1 cut(s)	234
Bsp143I	GATC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	5 cut(s)	21, 128, 263, 378, 399
BspCNI	CTCAG	2 cut(s)	559, 620
BspPI	GGATC	1 cut(s)	293
BsrDI	GCAATG	3 cut(s)	78, 430, 565
BsrFI	RCCGGY	2 cut(s)	348, 383
BssAI	RCCGGY	2 cut(s)	348, 383
BssECI	CCNNGG	3 cut(s)	234, 293, 570
BssMI	GATC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	2 cut(s)	401, 572
Bst4CI	ACNGT	3 cut(s)	147, 201, 223
Bst6I	CTCTTC	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	3 cut(s)	546, 607, 624
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	1 cut(s)	505
BstKTI	GATC	1 cut(s)	288
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	1 cut(s)	285
BstMCI	CGRYCG	3 cut(s)	245, 349, 388
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 170, 212, 608, 611
BstNI	CCWGG	2 cut(s)	401, 572
BstNSI	RCATGY	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	4 cut(s)	233, 234, 399, 570
BstV1I	GCAGC	5 cut(s)	77, 433, 574, 598, 614
BsuRI	GGCC	5 cut(s)	21, 128, 263, 378, 399
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	4 cut(s)	129, 143, 228, 453
Cac8I	GCNNGC	1 cut(s)	166
Cfr10I	RCCGGY	2 cut(s)	348, 383
Cfr13I	GGNCC	1 cut(s)	126
Cfr9I	CCCGGG	1 cut(s)	234
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	301
CspAI	ACCGGT	1 cut(s)	383
CviAII	CATG	7 cut(s)	44, 55, 120, 331, 409, 418, 496
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	3 cut(s)	546, 607, 624
DpnI	GATC	1 cut(s)	287
DpnII	GATC	1 cut(s)	285
DraIII	CACNNNGTG	1 cut(s)	149
EaeI	YGGCCR	3 cut(s)	261, 376, 397
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	121
EcoRII	CCWGG	2 cut(s)	399, 570
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	7 cut(s)	47, 58, 123, 334, 412, 421, 499
FatI	CATG	7 cut(s)	43, 54, 119, 330, 408, 417, 495
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	6 cut(s)	66, 447, 588, 603, 612, 620
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	6 cut(s)	66, 447, 588, 603, 612, 620
FspBI	CTAG	4 cut(s)	230, 273, 294, 555
GluI	GCNGC	6 cut(s)	66, 447, 588, 603, 612, 620
HaeIII	GGCC	5 cut(s)	21, 128, 263, 378, 399
HapII	CCGG	3 cut(s)	235, 349, 384
HgaI	GACGC	1 cut(s)	331
Hin1II	CATG	7 cut(s)	47, 58, 123, 334, 412, 421, 499
HincII	GTYRAC	2 cut(s)	270, 346
HindII	GTYRAC	2 cut(s)	270, 346
HinfI	GANTC	2 cut(s)	71, 276
HpaII	CCGG	3 cut(s)	235, 349, 384
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	270, 346
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	2 cut(s)	270, 346
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	522
HpyCH4III	ACNGT	3 cut(s)	147, 201, 223
HpyCH4V	TGCA	7 cut(s)	65, 123, 143, 164, 321, 563, 590
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 170, 212, 608, 611
HpyF3I	CTNAG	3 cut(s)	546, 607, 624
Hsp92II	CATG	7 cut(s)	47, 58, 123, 334, 412, 421, 499
Kzo9I	GATC	1 cut(s)	285
Lsp1109I	GCAGC	5 cut(s)	77, 433, 574, 598, 614
MaeI	CTAG	4 cut(s)	230, 273, 294, 555
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	287
MboI	GATC	1 cut(s)	285
MboII	GAAGA	2 cut(s)	31, 41
MlsI	TGGCCA	3 cut(s)	263, 378, 399
MluNI	TGGCCA	3 cut(s)	263, 378, 399
MlyI	GAGTC	2 cut(s)	65, 285
MnlI	CCTC	2 cut(s)	127, 616
Mox20I	TGGCCA	3 cut(s)	263, 378, 399
Mph1103I	ATGCAT	1 cut(s)	565
MscI	TGGCCA	3 cut(s)	263, 378, 399
MseI	TTAA	1 cut(s)	576
Msp20I	TGGCCA	3 cut(s)	263, 378, 399
MspA1I	CMGCKG	1 cut(s)	611
MspI	CCGG	3 cut(s)	235, 349, 384
MspR9I	CCNGG	4 cut(s)	235, 236, 401, 572
MvaI	CCWGG	2 cut(s)	401, 572
MwoI	GCNNNNNNNGC	5 cut(s)	165, 170, 212, 608, 611
NciI	CCSGG	2 cut(s)	235, 236
NdeII	GATC	1 cut(s)	285
NlaIII	CATG	7 cut(s)	47, 58, 123, 334, 412, 421, 499
NsiI	ATGCAT	1 cut(s)	565
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PflFI	GACNNNGTC	1 cut(s)	12
PinAI	ACCGGT	1 cut(s)	383
PkrI	GCNGC	6 cut(s)	67, 448, 589, 604, 613, 621
PleI	GAGTC	2 cut(s)	65, 284
PpsI	GAGTC	2 cut(s)	65, 284
PscI	ACATGT	1 cut(s)	54
PshAI	GACNNNNGTC	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	399, 570
PspGI	CCWGG	2 cut(s)	399, 570
PspPI	GGNCC	1 cut(s)	126
PsyI	GACNNNGTC	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	6 cut(s)	66, 447, 588, 603, 612, 620
Sau3AI	GATC	1 cut(s)	285
Sau96I	GGNCC	1 cut(s)	126
SchI	GAGTC	2 cut(s)	65, 285
ScrFI	CCNGG	4 cut(s)	235, 236, 401, 572
SetI	ASST	6 cut(s)	106, 208, 310, 520, 552, 613
SmaI	CCCGGG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SsiI	CCGC	1 cut(s)	241
SspMI	CTAG	4 cut(s)	230, 273, 294, 555
StyD4I	CCNGG	4 cut(s)	233, 234, 399, 570
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	3 cut(s)	147, 201, 223
TaqI	TCGA	2 cut(s)	345, 388
TatI	WGTACW	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TscAI	CASTG	4 cut(s)	136, 150, 228, 460
TseI	GCWGC	6 cut(s)	65, 446, 587, 602, 611, 619
TspDTI	ATGAA	4 cut(s)	97, 397, 474, 484
TspMI	CCCGGG	1 cut(s)	234
TspRI	CASTG	4 cut(s)	136, 150, 228, 460
Tth111I	GACNNNGTC	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	121
XceI	RCATGY	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	234
XmaJI	CCTAGG	1 cut(s)	293
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	4 cut(s)	230, 273, 294, 555
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.