Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004592

Physical Location & Seq

Genomic Coordinates Reverse (-)

5144158 .. 5147191

Gene Structure 3034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0067800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAACAGATTCGGTTCTTACGAGCAGAACGCCATGACAGGCTTTGAGGGGATGAAGATGGTGGATTCAGTTGTGTGCCCAAAACCGCGTCGTTTAAGCGCCTTAAATCCGTCGCTTAACGACTCCATGAGACCTCCTTGTAGATTCTTCAATCACTACCAATCAGAGATTGAAGATTCTCAAGCAGCGTCTGAGCTTCTGGACCTGATTCTCAATAAGGGGGATAGCGGAGGTGAGAGATCCATGAAGCAATTGGCTTCGTCGCCACCGTTCTTTTGCGGGTCTCCGCCGAGCCGGGCATCCAACCCGGTCATCCAAGATGAGCAGTTTGGGAGCAGCAAGGTGGGGGGCCCTTTTTCGCCGACGGCCGGGCGCAACGGAGGCTGTGTCCGGATGAAATCCGGGGACAAGCCGGTTGCGGTGCGCATCGAAGGGTTTGATTGTCTTAGCAGGGACCGCAGGAACTGCAGCATCCCTTCTGTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

162

Amino Acids

17.58

Weight (kDa)

8.59

Isoelectric Point (pI)

73.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62770 AT4G12390
fragaria_vesca	FvH4_5g00430 FvH4_7g27850
malus_domestica	MD00G1105000.v1.1 MD04G1081200.v1.1 MD07G1255800.v1.1
prunus_persica	Prupe.2G279900_v2.0.a1 Prupe.5G076900_v2.0.a1
pyrus_communis	pycom06g05600
rosa_chinensis	RchiOBHm_Chr1g0374721 RchiOBHm_Chr7g0202081
rosa_laevigata	RLG00000003627 RLG00000026718
rosa_multiflora	Rmu_co8511593.1_g000001 Rmu_sc0002063.1_g000001 Rmu_sc0006592.1_g000011 Rmu_sc0010587.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283280
rosa_rugosa	Rorug01G0384600 Rorug07G0067800
rosa_samantha	Rh1AG396200 Rh1BG360300 Rh1CG373700 Rh1DG391300 Rh7AG195300 Rh7BG196600 Rh7CG206400 Rh7DG201900
rosa_wichuraiana	Rw1G035130 Rw7G017100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	425
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	390
AciI	CCGC	6 cut(s)	86, 228, 279, 287, 419, 457
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	366
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	151, 173
AluBI	AGCT	2 cut(s)	196, 485
AluI	AGCT	2 cut(s)	196, 485
Alw26I	GTCTC	2 cut(s)	124, 288
AlwI	GGATC	1 cut(s)	234
AlwNI	CAGNNNCTG	2 cut(s)	191, 465
Aor13HI	TCCGGA	1 cut(s)	390
AoxI	GGCC	2 cut(s)	349, 366
ApaI	GGGCCC	1 cut(s)	353
ApeKI	GCWGC	3 cut(s)	185, 336, 468
Asp700I	GAANNNNTTC	1 cut(s)	8
AspLEI	GCGC	3 cut(s)	101, 375, 426
AspS9I	GGNCC	4 cut(s)	202, 349, 350, 454
AsuC2I	CCSGG	4 cut(s)	296, 308, 370, 403
AsuHPI	GGTGA	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	202, 454
BaeGI	GKGCMC	2 cut(s)	80, 353
BanII	GRGCYC	1 cut(s)	353
BbvI	GCAGC	3 cut(s)	197, 348, 480
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	381
BcnI	CCSGG	4 cut(s)	296, 308, 370, 403
BcoDI	GTCTC	2 cut(s)	124, 288
BfmI	CTRYAG	2 cut(s)	466, 480
BfoI	RGCGCY	1 cut(s)	102
BisI	GCNGC	3 cut(s)	186, 337, 469
BlsI	GCNGC	3 cut(s)	187, 338, 470
Bme1390I	CCNGG	4 cut(s)	296, 308, 370, 403
Bme18I	GGWCC	2 cut(s)	202, 454
BmgT120I	GGNCC	4 cut(s)	202, 349, 350, 454
BmiI	GGNNCC	3 cut(s)	350, 351, 455
BmrFI	CCNGG	4 cut(s)	296, 308, 370, 403
BmsI	GCATC	3 cut(s)	308, 435, 480
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	4 cut(s)	296, 308, 370, 403
BsaI	GGTCTC	2 cut(s)	124, 288
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	390
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse118I	RCCGGY	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	5 cut(s)	57, 299, 312, 399, 471
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	1 cut(s)	183
BseSI	GKGCMC	2 cut(s)	80, 353
BseX3I	CGGCCG	1 cut(s)	366
BseXI	GCAGC	3 cut(s)	197, 348, 480
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	369
BshFI	GGCC	2 cut(s)	351, 368
BsiEI	CGRYCG	1 cut(s)	369
BsiSI	CCGG	6 cut(s)	295, 308, 369, 391, 402, 413
BslFI	GGGAC	2 cut(s)	419, 467
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	2 cut(s)	124, 288
BsmFI	GGGAC	2 cut(s)	419, 467
BsnI	GGCC	2 cut(s)	351, 368
Bso31I	GGTCTC	2 cut(s)	124, 288
Bsp120I	GGGCCC	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	80, 353
Bsp13I	TCCGGA	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	239
BspACI	CCGC	6 cut(s)	86, 228, 279, 287, 419, 457
BspANI	GGCC	2 cut(s)	351, 368
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	390
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	3 cut(s)	350, 351, 455
BspMAI	CTGCAG	1 cut(s)	470
BspPI	GGATC	1 cut(s)	234
BspTNI	GGTCTC	2 cut(s)	124, 288
BsrFI	RCCGGY	1 cut(s)	412
BssAI	RCCGGY	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	270
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstDEI	CTNAG	2 cut(s)	192, 446
BstF5I	GGATG	5 cut(s)	57, 299, 312, 399, 471
BstFNI	CGCG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	102
BstHHI	GCGC	3 cut(s)	101, 375, 426
BstKTI	GATC	1 cut(s)	242
BstMAI	GTCTC	2 cut(s)	124, 288
BstMBI	GATC	1 cut(s)	239
BstMCI	CGRYCG	1 cut(s)	369
BstMWI	GCNNNNNNNGC	3 cut(s)	381, 456, 465
BstSCI	CCNGG	4 cut(s)	294, 306, 368, 401
BstSFI	CTRYAG	2 cut(s)	466, 480
BstSLI	GKGCMC	2 cut(s)	80, 353
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	3 cut(s)	197, 348, 480
BstX2I	RGATCY	1 cut(s)	239
BstYI	RGATCY	1 cut(s)	239
BstZI	CGGCCG	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	351, 368
BtsCI	GGATG	5 cut(s)	57, 299, 312, 399, 471
CaiI	CAGNNNCTG	2 cut(s)	191, 465
CfoI	GCGC	3 cut(s)	101, 375, 426
Cfr10I	RCCGGY	1 cut(s)	412
Cfr13I	GGNCC	4 cut(s)	202, 349, 350, 454
CseI	GACGC	2 cut(s)	77, 177
CviAII	CATG	3 cut(s)	34, 127, 244
CviJI	RGCY	9 cut(s)	42, 196, 257, 294, 351, 368, 384, 412, 485
CviKI_1	RGCY	9 cut(s)	42, 196, 257, 294, 351, 368, 384, 412, 485
DdeI	CTNAG	2 cut(s)	192, 446
DpnI	GATC	1 cut(s)	241
DpnII	GATC	1 cut(s)	239
EaeI	YGGCCR	1 cut(s)	366
EagI	CGGCCG	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	276
EclXI	CGGCCG	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	2 cut(s)	124, 288
Eco47I	GGWCC	2 cut(s)	202, 454
Eco52I	CGGCCG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	349, 350
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	3 cut(s)	37, 130, 247
FaiI	YATR	3 cut(s)	35, 128, 245
FaqI	GGGAC	2 cut(s)	419, 467
FatI	CATG	3 cut(s)	33, 126, 243
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	3 cut(s)	186, 337, 469
FokI	GGATG	5 cut(s)	64, 286, 299, 406, 458
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	3 cut(s)	186, 337, 469
FspAI	RTGCGCAY	1 cut(s)	425
FspI	TGCGCA	1 cut(s)	425
GlaI	GCGC	3 cut(s)	100, 374, 425
GluI	GCNGC	3 cut(s)	186, 337, 469
HaeII	RGCGCY	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	351, 368
HapII	CCGG	6 cut(s)	295, 308, 369, 391, 402, 413
HgaI	GACGC	2 cut(s)	77, 177
HhaI	GCGC	3 cut(s)	101, 375, 426
Hin1II	CATG	3 cut(s)	37, 130, 247
Hin6I	GCGC	3 cut(s)	99, 373, 424
HinP1I	GCGC	3 cut(s)	99, 373, 424
HinfI	GANTC	6 cut(s)	9, 65, 122, 144, 176, 208
HpaII	CCGG	6 cut(s)	295, 308, 369, 391, 402, 413
HphI	GGTGA	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	166, 193
Hpy188III	TCNNGA	2 cut(s)	200, 391
Hpy99I	CGWCG	4 cut(s)	93, 115, 265, 367
HpyAV	CCTTC	2 cut(s)	425, 486
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	468
HpyF10VI	GCNNNNNNNGC	3 cut(s)	381, 456, 465
HpyF3I	CTNAG	2 cut(s)	192, 446
Hsp92II	CATG	3 cut(s)	37, 130, 247
HspAI	GCGC	3 cut(s)	99, 373, 424
Kpn2I	TCCGGA	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	239
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	3 cut(s)	197, 348, 480
LweI	GCATC	3 cut(s)	308, 435, 480
MalI	GATC	1 cut(s)	241
MboI	GATC	1 cut(s)	239
MboII	GAAGA	3 cut(s)	67, 139, 185
MfeI	CAATTG	1 cut(s)	251
MflI	RGATCY	1 cut(s)	239
MhlI	GDGCHC	2 cut(s)	80, 353
MluCI	AATT	1 cut(s)	251
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	327
MnlI	CCTC	4 cut(s)	40, 144, 224, 374
MroI	TCCGGA	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	4 cut(s)	95, 104, 117, 487
MspI	CCGG	6 cut(s)	295, 308, 369, 391, 402, 413
MspR9I	CCNGG	4 cut(s)	296, 308, 370, 403
MunI	CAATTG	1 cut(s)	251
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	381, 456, 465
NciI	CCSGG	4 cut(s)	296, 308, 370, 403
NdeII	GATC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	37, 130, 247
NlaIV	GGNNCC	3 cut(s)	350, 351, 455
NmeAIII	GCCGAG	1 cut(s)	315
NsbI	TGCGCA	1 cut(s)	425
PcsI	WCGNNNNNNNCGW	2 cut(s)	18, 266
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	5 cut(s)	9, 65, 144, 176, 208
PkrI	GCNGC	3 cut(s)	187, 338, 470
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspN4I	GGNNCC	3 cut(s)	350, 351, 455
PspOMI	GGGCCC	1 cut(s)	349
PspPI	GGNCC	4 cut(s)	202, 349, 350, 454
PstI	CTGCAG	1 cut(s)	470
PstNI	CAGNNNCTG	2 cut(s)	191, 465
PsuI	RGATCY	1 cut(s)	239
SaqAI	TTAA	4 cut(s)	95, 104, 117, 487
SatI	GCNGC	3 cut(s)	186, 337, 469
Sau3AI	GATC	1 cut(s)	239
Sau96I	GGNCC	4 cut(s)	202, 349, 350, 454
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	4 cut(s)	296, 308, 370, 403
SduI	GDGCHC	2 cut(s)	80, 353
SetI	ASST	6 cut(s)	136, 198, 207, 235, 345, 487
SfaNI	GCATC	3 cut(s)	308, 435, 480
SfcI	CTRYAG	2 cut(s)	466, 480
SinI	GGWCC	2 cut(s)	202, 454
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	251
SsiI	CCGC	6 cut(s)	86, 228, 279, 287, 419, 457
StyD4I	CCNGG	4 cut(s)	294, 306, 368, 401
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	429
TasI	AATT	1 cut(s)	251
TfiI	GAWTC	5 cut(s)	9, 65, 144, 176, 208
Tru1I	TTAA	4 cut(s)	95, 104, 117, 487
Tru9I	TTAA	4 cut(s)	95, 104, 117, 487
TseI	GCWGC	3 cut(s)	185, 336, 468
TspDTI	ATGAA	4 cut(s)	17, 68, 260, 410
TspGWI	ACGGA	2 cut(s)	99, 393
VpaK11BI	GGWCC	2 cut(s)	202, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.