Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006592.1

Orthogroup ID

OG0004592

Physical Location & Seq

Genomic Coordinates Forward (+)

53160 .. 53783

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006592.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atggcaagacttggtttgatttccttactagttctcttccatgttgtttgcctcgttggtaaagcacactcaacccctcctagacactcaagttccactaaattcatcgaagcttcatgcagagcaacccagtatccagctctttgtgttcaatgccttgcaggttatgcacgctcgattcgacagagtgaaagacagctagctcagactgctttggcagtgagcctatcccgggtgcggaaagctgaatcctttgtggccaagttgactaaagtcagggggatcaagcctagggagtacagcgctgtgaaggactgcatagagaacatgggggatggcgtggaccggcttggccagtcggtgagggagcttggacataccggtcgagcctttggtcaggagttcatgtggcacatgagcaatgtgcagacttgggttagtgctgcactcactgatgagaccacttgtcttgatgggttttcaggtcgtgttatggatggaaatatcaaggttgctataagaagaagggtcaataatgttgctcaggtcactagcaactcactggctctggttaatcgctttgctgctaaacacagggcggccgcagctgccaaagagccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

207

Amino Acids

22.63

Weight (kDa)

10.1

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G62770 AT4G12390
fragaria_vesca	FvH4_5g00430 FvH4_7g27850
malus_domestica	MD00G1105000.v1.1 MD04G1081200.v1.1 MD07G1255800.v1.1
prunus_persica	Prupe.2G279900_v2.0.a1 Prupe.5G076900_v2.0.a1
pyrus_communis	pycom06g05600
rosa_chinensis	RchiOBHm_Chr1g0374721 RchiOBHm_Chr7g0202081
rosa_laevigata	RLG00000003627 RLG00000026718
rosa_multiflora	Rmu_co8511593.1_g000001 Rmu_sc0002063.1_g000001 Rmu_sc0006592.1_g000011 Rmu_sc0010587.1_g000003
rosa_roxburghii	Rroxscaffold_4G00283280
rosa_rugosa	Rorug01G0384600 Rorug07G0067800
rosa_samantha	Rh1AG396200 Rh1BG360300 Rh1CG373700 Rh1DG391300 Rh7AG195300 Rh7BG196600 Rh7CG206400 Rh7DG201900
rosa_wichuraiana	Rw1G035130 Rw7G017100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	381
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	3 cut(s)	238, 599, 603
AclWI	GGATC	1 cut(s)	290
AcoI	YGGCCR	3 cut(s)	258, 352, 600
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	1 cut(s)	299
AfeI	AGCGCT	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	232, 237
AgeI	ACCGGT	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	152
AhdI	GACNNNNNGTC	1 cut(s)	465
AhlI	ACTAGT	1 cut(s)	28
AluBI	AGCT	7 cut(s)	113, 140, 199, 203, 245, 370, 608
AluI	AGCT	7 cut(s)	113, 140, 199, 203, 245, 370, 608
Alw26I	GTCTC	1 cut(s)	452
AlwI	GGATC	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	231
Aor51HI	AGCGCT	1 cut(s)	304
AoxI	GGCC	3 cut(s)	258, 352, 600
ApeKI	GCWGC	4 cut(s)	443, 584, 605, 608
ApoI	RAATTY	1 cut(s)	101
AsiGI	ACCGGT	1 cut(s)	380
AspA2I	CCTAGG	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	2 cut(s)	232, 233
AsuHPI	GGTGA	1 cut(s)	373
AsuNHI	GCTAGC	1 cut(s)	199
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	343
AvrII	CCTAGG	1 cut(s)	290
BalI	TGGCCA	2 cut(s)	260, 354
BanII	GRGCYC	1 cut(s)	621
BbvI	GCAGC	4 cut(s)	430, 571, 595, 617
BccI	CCATC	3 cut(s)	329, 467, 491
BciVI	GTATCC	1 cut(s)	144
BcnI	CCSGG	2 cut(s)	232, 233
BcoDI	GTCTC	1 cut(s)	452
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	6 cut(s)	29, 81, 200, 291, 552, 622
BfoI	RGCGCY	1 cut(s)	306
BfuAI	ACCTGC	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	144
BisI	GCNGC	6 cut(s)	444, 585, 600, 603, 606, 609
BlnI	CCTAGG	1 cut(s)	290
BlsI	GCNGC	6 cut(s)	445, 586, 601, 604, 607, 610
Bme1390I	CCNGG	2 cut(s)	232, 233
Bme18I	GGWCC	1 cut(s)	343
BmeRI	GACNNNNNGTC	1 cut(s)	465
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	232, 233
BmrI	ACTGGG	1 cut(s)	124
BmtI	GCTAGC	1 cut(s)	203
BmuI	ACTGGG	1 cut(s)	124
BoxI	GACNNNNGTC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	543
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	2 cut(s)	232, 233
BsaI	GGTCTC	1 cut(s)	452
BsaJI	CCNNGG	2 cut(s)	231, 290
BsaWI	WCCGGW	1 cut(s)	380
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 237
Bse118I	RCCGGY	2 cut(s)	345, 380
Bse1I	ACTGG	3 cut(s)	130, 355, 567
Bse3DI	GCAATG	1 cut(s)	427
BseDI	CCNNGG	2 cut(s)	231, 290
BseGI	GGATG	2 cut(s)	340, 502
BseLI	CCNNNNNNNGG	2 cut(s)	232, 237
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	218, 557
BseNI	ACTGG	3 cut(s)	130, 355, 567
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	4 cut(s)	430, 571, 595, 617
BsgI	GTGCAG	2 cut(s)	429, 446
Bsh1285I	CGRYCG	2 cut(s)	385, 603
BshFI	GGCC	3 cut(s)	260, 354, 602
BshTI	ACCGGT	1 cut(s)	380
BsiEI	CGRYCG	2 cut(s)	385, 603
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	232, 346, 381
BslI	CCNNNNNNNGG	2 cut(s)	232, 237
BsmAI	GTCTC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	260, 354, 602
Bso31I	GGTCTC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	1 cut(s)	282
BspACI	CCGC	3 cut(s)	238, 599, 603
BspANI	GGCC	3 cut(s)	260, 354, 602
BspCNI	CTCAG	2 cut(s)	217, 556
BspMI	ACCTGC	1 cut(s)	152
BspOI	GCTAGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	452
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	2 cut(s)	345, 380
BsrI	ACTGG	3 cut(s)	130, 355, 567
BssAI	RCCGGY	2 cut(s)	345, 380
BssECI	CCNNGG	2 cut(s)	231, 290
BssMI	GATC	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	290
Bst6I	CTCTTC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	172, 201
BstDEI	CTNAG	2 cut(s)	204, 543
BstF5I	GGATG	2 cut(s)	340, 502
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	1 cut(s)	285
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	1 cut(s)	282
BstMCI	CGRYCG	2 cut(s)	385, 603
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 209, 605, 608
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	230, 231
BstV1I	GCAGC	4 cut(s)	430, 571, 595, 617
BstZI	CGGCCG	1 cut(s)	600
BsuI	GTATCC	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	260, 354, 602
BtsCI	GGATG	2 cut(s)	340, 502
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	3 cut(s)	225, 450, 560
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	2 cut(s)	172, 201
CciNI	GCGGCCGC	1 cut(s)	600
CfoI	GCGC	1 cut(s)	305
Cfr10I	RCCGGY	2 cut(s)	345, 380
Cfr13I	GGNCC	1 cut(s)	343
Cfr9I	CCCGGG	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	298
CspAI	ACCGGT	1 cut(s)	380
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviAII	CATG	5 cut(s)	41, 117, 328, 406, 415
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	2 cut(s)	204, 543
DpnI	GATC	1 cut(s)	284
DpnII	GATC	1 cut(s)	282
DrdI	GACNNNNNNGTC	1 cut(s)	381
DriI	GACNNNNNGTC	1 cut(s)	465
DseDI	GACNNNNNNGTC	1 cut(s)	381
EaeI	YGGCCR	3 cut(s)	258, 352, 600
EagI	CGGCCG	1 cut(s)	600
Eam1104I	CTCTTC	1 cut(s)	41
Eam1105I	GACNNNNNGTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	452
Eco47I	GGWCC	1 cut(s)	343
Eco47III	AGCGCT	1 cut(s)	304
Eco52I	CGGCCG	1 cut(s)	600
Eco88I	CYCGRG	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	290
EcoT38I	GRGCYC	1 cut(s)	621
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	5 cut(s)	44, 120, 331, 409, 418
FatI	CATG	5 cut(s)	40, 116, 327, 405, 414
Fnu4HI	GCNGC	6 cut(s)	444, 585, 600, 603, 606, 609
FokI	GGATG	2 cut(s)	347, 509
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	6 cut(s)	444, 585, 600, 603, 606, 609
FspBI	CTAG	6 cut(s)	29, 81, 200, 291, 552, 622
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	6 cut(s)	444, 585, 600, 603, 606, 609
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	3 cut(s)	260, 354, 602
HapII	CCGG	3 cut(s)	232, 346, 381
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	5 cut(s)	44, 120, 331, 409, 418
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	2 cut(s)	178, 248
HpaII	CCGG	3 cut(s)	232, 346, 381
HphI	GGTGA	1 cut(s)	373
Hpy166II	GTNNAC	2 cut(s)	267, 343
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	2 cut(s)	398, 470
Hpy8I	GTNNAC	2 cut(s)	267, 343
HpyAV	CCTTC	2 cut(s)	304, 519
HpyCH4V	TGCA	6 cut(s)	120, 161, 170, 318, 427, 446
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 209, 605, 608
HpyF3I	CTNAG	2 cut(s)	204, 543
Hsp92II	CATG	5 cut(s)	44, 120, 331, 409, 418
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	4 cut(s)	430, 571, 595, 617
MaeI	CTAG	6 cut(s)	29, 81, 200, 291, 552, 622
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	1 cut(s)	284
MboI	GATC	1 cut(s)	282
MboII	GAAGA	2 cut(s)	28, 534
MhlI	GDGCHC	1 cut(s)	621
MlsI	TGGCCA	2 cut(s)	260, 354
MluCI	AATT	1 cut(s)	101
MluNI	TGGCCA	2 cut(s)	260, 354
MnlI	CCTC	3 cut(s)	62, 87, 357
Mox20I	TGGCCA	2 cut(s)	260, 354
MscI	TGGCCA	2 cut(s)	260, 354
MseI	TTAA	1 cut(s)	573
Msp20I	TGGCCA	2 cut(s)	260, 354
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	3 cut(s)	232, 346, 381
MspR9I	CCNGG	2 cut(s)	232, 233
MwoI	GCNNNNNNNGC	4 cut(s)	167, 209, 605, 608
NciI	CCSGG	2 cut(s)	232, 233
NdeII	GATC	1 cut(s)	282
NheI	GCTAGC	1 cut(s)	199
NlaIII	CATG	5 cut(s)	44, 120, 331, 409, 418
NmuCI	GTSAC	1 cut(s)	547
NotI	GCGGCCGC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	178, 248
PinAI	ACCGGT	1 cut(s)	380
PkrI	GCNGC	6 cut(s)	445, 586, 601, 604, 607, 610
PshAI	GACNNNNGTC	1 cut(s)	272
PspPI	GGNCC	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	6 cut(s)	444, 585, 600, 603, 606, 609
Sau3AI	GATC	1 cut(s)	282
Sau96I	GGNCC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	232, 233
SduI	GDGCHC	1 cut(s)	621
SinI	GGWCC	1 cut(s)	343
SmaI	CCCGGG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SpeI	ACTAGT	1 cut(s)	28
Sse9I	AATT	1 cut(s)	101
SsiI	CCGC	3 cut(s)	238, 599, 603
SspMI	CTAG	6 cut(s)	29, 81, 200, 291, 552, 622
StyD4I	CCNGG	2 cut(s)	230, 231
StyI	CCWWGG	1 cut(s)	290
TaqI	TCGA	4 cut(s)	108, 176, 181, 385
TasI	AATT	1 cut(s)	101
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	2 cut(s)	602, 605
TfiI	GAWTC	2 cut(s)	178, 248
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	3 cut(s)	225, 457, 567
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	4 cut(s)	443, 584, 605, 608
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	3 cut(s)	94, 105, 394
TspMI	CCCGGG	1 cut(s)	231
TspRI	CASTG	3 cut(s)	225, 457, 567
VpaK11BI	GGWCC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	101
XmaI	CCCGGG	1 cut(s)	231
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	6 cut(s)	29, 81, 200, 291, 552, 622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.