Prupe.2G311900_v2.0.a1

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0005760
Physical Location & Seq
Forward (+)
29473137 .. 29474275
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G311900.1

Sequence Viewer

Length: 369 bp
ATGGCGATCAATCTAGGCCGTCTATTCTCATCAACGACCGTTCTCTCAACCCCTAGTAGAGCCGAGCCTCTAACTCGCGCCGCCATCAACTCAGTGAGTCGCCTCTTGTGTTCATCGGCTACGCAGTCTCAATCCCAGCACCAAAACCCCAGCAAGGAACAAAGAGAGCCCACCGACGAAAAACTTGAAAGCACTGAAAATCAAGCTGATGATGATGATGATGATGATGAAGACGATGGGTATATGAATAAAGAGACGGGTGAGATCGGCGGGCCCAAAGGGCCGGAGCCCACCCGATTCGGCGATTGGGAGCGAAACGCACGAAACCACACCCAAAATGGAACCCAGAAGAAGAAACTTGTAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

123

Amino Acids

13.53

Weight (kDa)

4.92

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 81, 270
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 2 cut(s) 132, 248
AoxI GGCC 3 cut(s) 16, 272, 281
ApaI GGGCCC 1 cut(s) 276
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 3 cut(s) 272, 273, 281
AsuHPI GGTGA 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 276
BanII GRGCYC 3 cut(s) 171, 276, 291
BbsI GAAGAC 1 cut(s) 237
BccI CCATC 2 cut(s) 92, 230
BceAI ACGGC 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 132, 248
BfaI CTAG 2 cut(s) 14, 54
BglI GCCNNNNNGGC 1 cut(s) 280
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmgT120I GGNCC 3 cut(s) 272, 273, 281
BmiI GGNNCC 3 cut(s) 274, 288, 343
BpiI GAAGAC 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 276
BseYI CCCAGC 2 cut(s) 135, 149
Bsh1236I CGCG 1 cut(s) 78
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 3 cut(s) 18, 274, 283
BsiEI CGRYCG 1 cut(s) 39
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 2 cut(s) 132, 248
BsmBI CGTCTC 1 cut(s) 248
BsnI GGCC 3 cut(s) 18, 274, 283
Bsp120I GGGCCC 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 171, 276, 291
Bsp143I GATC 2 cut(s) 6, 264
BspACI CCGC 2 cut(s) 81, 270
BspANI GGCC 3 cut(s) 18, 274, 283
BspCNI CTCAG 1 cut(s) 104
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 274, 288, 343
BssMI GATC 2 cut(s) 6, 264
Bst4CI ACNGT 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 9, 267
BstMAI GTCTC 2 cut(s) 132, 248
BstMBI GATC 2 cut(s) 6, 264
BstMCI CGRYCG 1 cut(s) 39
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 276
BstUI CGCG 1 cut(s) 78
BstV2I GAAGAC 1 cut(s) 237
BsuRI GGCC 3 cut(s) 18, 274, 283
BtsIMutI CAGTG 2 cut(s) 99, 192
Cac8I GCNNGC 1 cut(s) 272
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 272, 273, 281
CviJI RGCY 9 cut(s) 18, 62, 67, 119, 169, 206, 274, 283, 289
CviKI_1 RGCY 9 cut(s) 18, 62, 67, 119, 169, 206, 274, 283, 289
DdeI CTNAG 1 cut(s) 91
DpnI GATC 2 cut(s) 8, 266
DpnII GATC 2 cut(s) 6, 264
Eco24I GRGCYC 3 cut(s) 171, 276, 291
EcoT38I GRGCYC 3 cut(s) 171, 276, 291
Esp3I CGTCTC 1 cut(s) 248
FaiI YATR 2 cut(s) 243, 245
FauI CCCGC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 3 cut(s) 171, 276, 291
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 2 cut(s) 14, 54
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 2 cut(s) 139, 153
HaeIII GGCC 3 cut(s) 18, 274, 283
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 2 cut(s) 97, 297
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 272
Hpy99I CGWCG 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpyF3I CTNAG 1 cut(s) 91
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 6, 264
LmnI GCTCC 2 cut(s) 286, 310
LpnPI CCDG 4 cut(s) 149, 163, 297, 359
MaeI CTAG 2 cut(s) 14, 54
MalI GATC 2 cut(s) 8, 266
MboI GATC 2 cut(s) 6, 264
MboII GAAGA 3 cut(s) 242, 361, 364
MhlI GDGCHC 3 cut(s) 171, 276, 291
MlyI GAGTC 1 cut(s) 106
MnlI CCTC 2 cut(s) 78, 113
MspI CCGG 1 cut(s) 284
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 2 cut(s) 6, 264
NlaIV GGNNCC 3 cut(s) 274, 288, 343
NmeAIII GCCGAG 1 cut(s) 88
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PspFI CCCAGC 2 cut(s) 135, 149
PspN4I GGNNCC 3 cut(s) 274, 288, 343
PspOMI GGGCCC 1 cut(s) 272
PspPI GGNCC 3 cut(s) 272, 273, 281
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 6, 264
Sau96I GGNCC 3 cut(s) 272, 273, 281
SchI GAGTC 1 cut(s) 106
SduI GDGCHC 3 cut(s) 171, 276, 291
SetI ASST 1 cut(s) 208
SfiI GGCCNNNNNGGCC 1 cut(s) 280
SsiI CCGC 2 cut(s) 81, 270
SspMI CTAG 2 cut(s) 14, 54
TaaI ACNGT 1 cut(s) 40
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 297
TscAI CASTG 2 cut(s) 99, 199
TspDTI ATGAA 3 cut(s) 102, 243, 260
TspRI CASTG 2 cut(s) 99, 199
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XspI CTAG 2 cut(s) 14, 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.