Rh7CG450200

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005760
Physical Location & Seq
Reverse (-)
59243393 .. 59263233
19841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG450200.1

Sequence Viewer

Length: 489 bp
ATGGCAATGCAATCTGTTGTTGCTTATTATGTGATGGGAATGGTAGTGAAGGAAAATGGACCTGTTTTTTACTCAGCTTTTAATCCCTTGGCCACAGTAATGGTTGCAATCCTGGGTTCCTTTGTTTTAGCAGAACAATTGTACCTTGGGAGAAAAGAGAAGAAACATGGCGACGAATCTGAGCCGTCTGTTCTCATCAACAACGATGACGAAAGCCGAGCCTCTGACTCGCTCAGCTACAACTCAGTGAGTCGGTTCTTGCCCTCCTCGACCCGGCAGTCTCAACCGGAGCGCGAAAACGCCCAGGTAAAATACGCCGGAAGCGCCGAACCTGACGACGAAAAGAGTGAAAAGCGAGATGAGGATGGTGAAGGTGACAGAGAAAAGTTGGATTTGAATAAAGAAATGGGTGAGATCGGCGGGCCGAAAGGGCCTAAGCCGACCCGGTTCGGAGATTGGGAAAAAAATGGTCAGTGCTCTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

162

Amino Acids

17.97

Weight (kDa)

4.72

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 118 - 162 2e-13 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 277
AccII CGCG 1 cut(s) 294
AciI CCGC 1 cut(s) 420
AcoI YGGCCR 1 cut(s) 90
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 1 cut(s) 397
AjnI CCWGG 2 cut(s) 111, 303
AluBI AGCT 2 cut(s) 77, 237
AluI AGCT 2 cut(s) 77, 237
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 1 cut(s) 285
AoxI GGCC 3 cut(s) 90, 422, 431
AspLEI GCGC 2 cut(s) 294, 326
AspS9I GGNCC 3 cut(s) 59, 422, 431
AsuC2I CCSGG 2 cut(s) 274, 445
AsuHPI GGTGA 3 cut(s) 380, 386, 422
AvaII GGWCC 1 cut(s) 59
BaeI ACNNNNGTAYC 2 cut(s) 125, 158
BalI TGGCCA 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 479
BccI CCATC 2 cut(s) 28, 359
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 2 cut(s) 113, 305
BcnI CCSGG 2 cut(s) 274, 445
BcoDI GTCTC 1 cut(s) 285
BfoI RGCGCY 1 cut(s) 327
BglI GCCNNNNNGGC 1 cut(s) 430
BlpI GCTNAGC 1 cut(s) 233
Bme1390I CCNGG 4 cut(s) 113, 274, 305, 445
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 3 cut(s) 59, 422, 431
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 4 cut(s) 113, 274, 305, 445
Bpu10I CCTNAGC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 233
BpuMI CCSGG 2 cut(s) 274, 445
BsaJI CCNNGG 4 cut(s) 87, 112, 145, 303
BsaWI WCCGGW 1 cut(s) 286
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 2 cut(s) 113, 305
BseDI CCNNGG 4 cut(s) 87, 112, 145, 303
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 4 cut(s) 87, 171, 247, 258
BseRI GAGGAG 1 cut(s) 256
Bsh1236I CGCG 1 cut(s) 294
BshFI GGCC 3 cut(s) 92, 424, 433
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 4 cut(s) 274, 287, 318, 445
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 285
BsnI GGCC 3 cut(s) 92, 424, 433
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 1 cut(s) 414
Bsp1720I GCTNAGC 1 cut(s) 233
BspACI CCGC 1 cut(s) 420
BspANI GGCC 3 cut(s) 92, 424, 433
BspCNI CTCAG 4 cut(s) 86, 172, 246, 257
BspFNI CGCG 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 12
BssECI CCNNGG 4 cut(s) 87, 112, 145, 303
BssMI GATC 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 87, 145
Bst2UI CCWGG 2 cut(s) 113, 305
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 422
BstDEI CTNAG 5 cut(s) 73, 180, 233, 244, 435
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 294
BstH2I RGCGCY 1 cut(s) 327
BstHHI GCGC 2 cut(s) 294, 326
BstKTI GATC 1 cut(s) 417
BstMAI GTCTC 1 cut(s) 285
BstMBI GATC 1 cut(s) 414
BstMWI GCNNNNNNNGC 2 cut(s) 323, 430
BstNI CCWGG 2 cut(s) 113, 305
BstSCI CCNGG 4 cut(s) 111, 272, 303, 443
BstUI CGCG 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 100
BsuRI GGCC 3 cut(s) 92, 424, 433
BtsCI GGATG 1 cut(s) 370
BtsIMutI CAGTG 2 cut(s) 252, 479
Cac8I GCNNGC 1 cut(s) 422
CfoI GCGC 2 cut(s) 294, 326
Cfr13I GGNCC 3 cut(s) 59, 422, 431
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 167
CviJI RGCY 9 cut(s) 77, 92, 184, 216, 221, 237, 424, 433, 439
CviKI_1 RGCY 9 cut(s) 77, 92, 184, 216, 221, 237, 424, 433, 439
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 5 cut(s) 73, 180, 233, 244, 435
DpnI GATC 1 cut(s) 416
DpnII GATC 1 cut(s) 414
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 87, 145
Eco47I GGWCC 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 111, 303
EcoT14I CCWWGG 2 cut(s) 87, 145
ErhI CCWWGG 2 cut(s) 87, 145
FaeI CATG 1 cut(s) 170
FaiI YATR 2 cut(s) 30, 168
FatI CATG 1 cut(s) 166
FauI CCCGC 1 cut(s) 413
FokI GGATG 1 cut(s) 377
GlaI GCGC 2 cut(s) 293, 325
HaeII RGCGCY 1 cut(s) 327
HaeIII GGCC 3 cut(s) 92, 424, 433
HapII CCGG 4 cut(s) 274, 287, 318, 445
HhaI GCGC 2 cut(s) 294, 326
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 2 cut(s) 292, 324
HinP1I GCGC 2 cut(s) 292, 324
HinfI GANTC 3 cut(s) 176, 227, 250
HpaII CCGG 4 cut(s) 274, 287, 318, 445
HphI GGTGA 3 cut(s) 380, 386, 422
Hpy188I TCNGA 4 cut(s) 181, 226, 452, 481
Hpy99I CGWCG 2 cut(s) 176, 341
HpyAV CCTTC 2 cut(s) 43, 365
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 2 cut(s) 10, 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 430
HpyF3I CTNAG 5 cut(s) 73, 180, 233, 244, 435
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 2 cut(s) 292, 324
Kzo9I GATC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 289
MaeIII GTNAC 1 cut(s) 374
MalI GATC 1 cut(s) 416
MboI GATC 1 cut(s) 414
MboII GAAGA 1 cut(s) 172
MfeI CAATTG 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 479
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 2 cut(s) 221, 259
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 4 cut(s) 232, 274, 277, 355
Mox20I TGGCCA 1 cut(s) 92
MscI TGGCCA 1 cut(s) 92
MseI TTAA 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 4 cut(s) 274, 287, 318, 445
MspR9I CCNGG 4 cut(s) 113, 274, 305, 445
MunI CAATTG 1 cut(s) 137
MvaI CCWGG 2 cut(s) 113, 305
MvnI CGCG 1 cut(s) 294
MwoI GCNNNNNNNGC 2 cut(s) 323, 430
NciI CCSGG 2 cut(s) 274, 445
NdeII GATC 1 cut(s) 414
NlaIII CATG 1 cut(s) 170
NlaIV GGNNCC 1 cut(s) 118
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 176
PleI GAGTC 2 cut(s) 221, 258
PpsI GAGTC 2 cut(s) 221, 258
Psp6I CCWGG 2 cut(s) 111, 303
PspGI CCWGG 2 cut(s) 111, 303
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 3 cut(s) 59, 422, 431
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 81
Sau3AI GATC 1 cut(s) 414
Sau96I GGNCC 3 cut(s) 59, 422, 431
SchI GAGTC 2 cut(s) 221, 259
ScrFI CCNGG 4 cut(s) 113, 274, 305, 445
SduI GDGCHC 1 cut(s) 479
SetI ASST 7 cut(s) 64, 79, 147, 239, 309, 334, 376
SfiI GGCCNNNNNGGCC 1 cut(s) 430
SinI GGWCC 1 cut(s) 59
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 1 cut(s) 137
SsiI CCGC 1 cut(s) 420
StyD4I CCNGG 4 cut(s) 111, 272, 303, 443
StyI CCWWGG 2 cut(s) 87, 145
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 269
TasI AATT 1 cut(s) 137
TfiI GAWTC 1 cut(s) 176
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 2 cut(s) 252, 479
TseFI GTSAC 1 cut(s) 374
Tsp45I GTSAC 1 cut(s) 374
TspRI CASTG 2 cut(s) 252, 479
VpaK11BI GGWCC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.