RLG00000020376

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005760
Physical Location & Seq
Reverse (-)
64387376 .. 64388208
833 bp
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UTR
Exon/CDS
Intron
RLM00000020376

Sequence Viewer

Length: 336 bp
ATGGGTTTGCTTTGGGCCTTGAATCATGGCTACAAATCTGAGCCGTCGATTCTCATCAACGATCATAAGGAAAGCCGAGCCTCTAGCTCGCTCAGCTGTCAACTCAGTGGGCTCTTGTCTTCGTCAACTGAGCAATCTCAACAGGAGCGCGAAAACGAGGAGGTGAAATACGACGGAAGCGCCAAACTTGACGACGGAAAGAGTGAAAAGCCAACTGAGGATGGTGAAGATGAGTTGGACTTGAATAAAGAGATGGGTGAGATCGGCGGGCTGAAAGGGCCCAAGCCGACCCGGTATGGCTATTGGGAAAAAAACGGTCGGTGCTCTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

112

Amino Acids

12.34

Weight (kDa)

4.74

Isoelectric Point (pI)

49.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 77 - 111 1.4e-12 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 267
AgsI TTSAA 2 cut(s) 22, 244
AluBI AGCT 2 cut(s) 87, 96
AluI AGCT 2 cut(s) 87, 96
Alw21I GWGCWC 1 cut(s) 326
AoxI GGCC 2 cut(s) 15, 278
ApaI GGGCCC 1 cut(s) 282
AspLEI GCGC 2 cut(s) 150, 182
AspS9I GGNCC 3 cut(s) 15, 278, 279
AsuC2I CCSGG 1 cut(s) 292
AsuHPI GGTGA 3 cut(s) 175, 236, 269
BaeGI GKGCMC 1 cut(s) 282
BanII GRGCYC 2 cut(s) 114, 282
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 326
BccI CCATC 2 cut(s) 215, 247
BceAI ACGGC 1 cut(s) 28
BcnI CCSGG 1 cut(s) 292
BfaI CTAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 92
Bme1390I CCNGG 1 cut(s) 292
BmgT120I GGNCC 3 cut(s) 15, 278, 279
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 292
BsaBI GATNNNNATC 1 cut(s) 53
Bse8I GATNNNNATC 1 cut(s) 53
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 53
BseMII CTCAG 5 cut(s) 30, 106, 118, 120, 207
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 282
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 2 cut(s) 17, 280
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 1 cut(s) 292
BsnI GGCC 2 cut(s) 17, 280
Bsp120I GGGCCC 1 cut(s) 278
Bsp1286I GDGCHC 3 cut(s) 114, 282, 326
Bsp143I GATC 2 cut(s) 61, 261
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 1 cut(s) 267
BspANI GGCC 2 cut(s) 17, 280
BspCNI CTCAG 5 cut(s) 31, 105, 117, 121, 208
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 280
BssMI GATC 2 cut(s) 61, 261
Bst4CI ACNGT 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 89, 269
BstDEI CTNAG 5 cut(s) 39, 92, 104, 129, 216
BstF5I GGATG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 2 cut(s) 150, 182
BstKTI GATC 2 cut(s) 64, 264
BstMBI GATC 2 cut(s) 61, 261
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 93, 277
BstSCI CCNGG 1 cut(s) 290
BstSLI GKGCMC 1 cut(s) 282
BstUI CGCG 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 111
BsuRI GGCC 2 cut(s) 17, 280
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 112
Cac8I GCNNGC 2 cut(s) 89, 269
CfoI GCGC 2 cut(s) 150, 182
Cfr13I GGNCC 3 cut(s) 15, 278, 279
CviAII CATG 1 cut(s) 26
DdeI CTNAG 5 cut(s) 39, 92, 104, 129, 216
DpnI GATC 2 cut(s) 63, 263
DpnII GATC 2 cut(s) 61, 261
Eco24I GRGCYC 2 cut(s) 114, 282
EcoO109I RGGNCCY 1 cut(s) 278
EcoT38I GRGCYC 2 cut(s) 114, 282
FaeI CATG 1 cut(s) 29
FaiI YATR 3 cut(s) 27, 66, 297
FatI CATG 1 cut(s) 25
FauI CCCGC 1 cut(s) 260
FokI GGATG 1 cut(s) 233
FriOI GRGCYC 2 cut(s) 114, 282
FspBI CTAG 1 cut(s) 84
GlaI GCGC 2 cut(s) 149, 181
HaeII RGCGCY 1 cut(s) 183
HaeIII GGCC 2 cut(s) 17, 280
HapII CCGG 1 cut(s) 292
HhaI GCGC 2 cut(s) 150, 182
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 2 cut(s) 148, 180
HinP1I GCGC 2 cut(s) 148, 180
HincII GTYRAC 2 cut(s) 101, 126
HindII GTYRAC 2 cut(s) 101, 126
HinfI GANTC 2 cut(s) 22, 49
HpaII CCGG 1 cut(s) 292
HphI GGTGA 3 cut(s) 175, 236, 269
Hpy166II GTNNAC 2 cut(s) 101, 126
Hpy188I TCNGA 2 cut(s) 40, 328
Hpy8I GTNNAC 2 cut(s) 101, 126
Hpy99I CGWCG 3 cut(s) 49, 176, 197
HpyCH4III ACNGT 1 cut(s) 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 277
HpyF3I CTNAG 5 cut(s) 39, 92, 104, 129, 216
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 2 cut(s) 148, 180
Kzo9I GATC 2 cut(s) 61, 261
LmnI GCTCC 1 cut(s) 145
LpnPI CCDG 2 cut(s) 128, 305
MaeI CTAG 1 cut(s) 84
MalI GATC 2 cut(s) 63, 263
MboI GATC 2 cut(s) 61, 261
MboII GAAGA 2 cut(s) 111, 239
MhlI GDGCHC 3 cut(s) 114, 282, 326
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 4 cut(s) 91, 151, 154, 211
MseI TTAA 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 292
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 93, 277
NciI CCSGG 1 cut(s) 292
NdeII GATC 2 cut(s) 61, 261
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 101
PfeI GAWTC 2 cut(s) 22, 49
PspN4I GGNNCC 1 cut(s) 280
PspOMI GGGCCC 1 cut(s) 278
PspPI GGNCC 3 cut(s) 15, 278, 279
PvuII CAGCTG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 334
Sau3AI GATC 2 cut(s) 61, 261
Sau96I GGNCC 3 cut(s) 15, 278, 279
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 3 cut(s) 114, 282, 326
SetI ASST 3 cut(s) 89, 98, 165
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 290
TaaI ACNGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 47
TfiI GAWTC 2 cut(s) 22, 49
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
TscAI CASTG 1 cut(s) 112
TspGWI ACGGA 2 cut(s) 189, 210
TspRI CASTG 1 cut(s) 112
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.