Rh1CG420300

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005760
Physical Location & Seq
Forward (+)
68006581 .. 68006892
312 bp
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UTR
Exon/CDS
Intron
Rh1CG420300.1

Sequence Viewer

Length: 312 bp
ATGGCGACGAATCTGAGCCGTCGATTCTCATCAACGATCGTAACGAAAGCCGAGCCTCTGGCTCGCTCAGCTGTCAACTCAGTGGGCCGGCTCTTGTCCTCCTCGACCGGGCAATCTCAACCGGAGCGCGAAAACGCGGAGGTGAAATACGACGGAAGCGCCAAACAGGACGACGATGGAACTGAGGATGGTGAAAATGACGGAGATGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGCCGAAAGGGCCCGAGCCGACCCGGTACGGCGACTGGGAAAAAAACGGTCGGTGCTCTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

103

Amino Acids

11.13

Weight (kDa)

4.49

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 70 - 103 1.4e-18 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 129, 137
AciI CCGC 2 cut(s) 137, 243
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 221
Ama87I CYCGRG 1 cut(s) 257
AoxI GGCC 3 cut(s) 85, 245, 254
ApaI GGGCCC 1 cut(s) 258
AspLEI GCGC 2 cut(s) 129, 161
AspS9I GGNCC 4 cut(s) 85, 245, 254, 255
AsuC2I CCSGG 2 cut(s) 109, 268
AsuHPI GGTGA 3 cut(s) 154, 203, 245
AvaI CYCGRG 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 302
BccI CCATC 2 cut(s) 170, 182
BceAI ACGGC 2 cut(s) 3, 289
BcnI CCSGG 2 cut(s) 109, 268
BcoDI GTCTC 1 cut(s) 221
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 253
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 109, 268
BmeT110I CYCGRG 1 cut(s) 257
BmgT120I GGNCC 4 cut(s) 85, 245, 254, 255
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 2 cut(s) 109, 268
BmrI ACTGGG 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 289
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 109, 268
BsaBI GATNNNNATC 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 28
BseGI GGATG 1 cut(s) 193
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 4 cut(s) 5, 81, 93, 174
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 258
Bsh1236I CGCG 2 cut(s) 129, 137
Bsh1285I CGRYCG 3 cut(s) 39, 108, 295
BshFI GGCC 3 cut(s) 87, 247, 256
BsiEI CGRYCG 3 cut(s) 39, 108, 295
BsiHKAI GWGCWC 1 cut(s) 302
BsiHKCI CYCGRG 1 cut(s) 257
BsiSI CCGG 4 cut(s) 88, 108, 122, 268
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 221
BsmBI CGTCTC 1 cut(s) 221
BsnI GGCC 3 cut(s) 87, 247, 256
BsoBI CYCGRG 1 cut(s) 257
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 258, 302
Bsp143I GATC 2 cut(s) 36, 237
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 2 cut(s) 137, 243
BspANI GGCC 3 cut(s) 87, 247, 256
BspCNI CTCAG 4 cut(s) 6, 80, 92, 175
BspFNI CGCG 2 cut(s) 129, 137
BspLI GGNNCC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 1 cut(s) 284
BssAI RCCGGY 1 cut(s) 87
BssMI GATC 2 cut(s) 36, 237
Bst4CI ACNGT 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 64, 89, 245
BstDEI CTNAG 4 cut(s) 14, 67, 79, 183
BstF5I GGATG 1 cut(s) 193
BstFNI CGCG 2 cut(s) 129, 137
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 129, 161
BstKTI GATC 2 cut(s) 39, 240
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 2 cut(s) 36, 237
BstMCI CGRYCG 3 cut(s) 39, 108, 295
BstMWI GCNNNNNNNGC 2 cut(s) 68, 253
BstSCI CCNGG 2 cut(s) 107, 266
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 2 cut(s) 129, 137
BsuRI GGCC 3 cut(s) 87, 247, 256
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 3 cut(s) 64, 89, 245
CfoI GCGC 2 cut(s) 129, 161
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 4 cut(s) 85, 245, 254, 255
Csp6I GTAC 1 cut(s) 271
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 4 cut(s) 14, 67, 79, 183
DpnI GATC 2 cut(s) 38, 239
DpnII GATC 2 cut(s) 36, 237
Eco24I GRGCYC 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 221
FauI CCCGC 1 cut(s) 236
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 258
GlaI GCGC 2 cut(s) 128, 160
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 3 cut(s) 87, 247, 256
HapII CCGG 4 cut(s) 88, 108, 122, 268
HhaI GCGC 2 cut(s) 129, 161
Hin6I GCGC 2 cut(s) 127, 159
HinP1I GCGC 2 cut(s) 127, 159
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 10, 24
HpaII CCGG 4 cut(s) 88, 108, 122, 268
HphI GGTGA 3 cut(s) 154, 203, 245
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 15, 304
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 4 cut(s) 10, 24, 155, 176
HpyCH4III ACNGT 1 cut(s) 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 253
HpyF3I CTNAG 4 cut(s) 14, 67, 79, 183
HspAI GCGC 2 cut(s) 127, 159
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 2 cut(s) 36, 237
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 44, 101, 121, 135, 152, 265, 281
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 38, 239
MboI GATC 2 cut(s) 36, 237
MhlI GDGCHC 2 cut(s) 258, 302
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 5 cut(s) 66, 109, 112, 133, 178
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 4 cut(s) 88, 108, 122, 268
MspR9I CCNGG 2 cut(s) 109, 268
MvnI CGCG 2 cut(s) 129, 137
MwoI GCNNNNNNNGC 2 cut(s) 68, 253
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 109, 268
NdeII GATC 2 cut(s) 36, 237
NgoMIV GCCGGC 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 256
NmeAIII GCCGAG 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 10, 24
Ple19I CGATCG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 256
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 4 cut(s) 85, 245, 254, 255
PvuI CGATCG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 1 cut(s) 310
Sau3AI GATC 2 cut(s) 36, 237
Sau96I GGNCC 4 cut(s) 85, 245, 254, 255
ScrFI CCNGG 2 cut(s) 109, 268
SduI GDGCHC 2 cut(s) 258, 302
SetI ASST 2 cut(s) 73, 144
SfiI GGCCNNNNNGGCC 1 cut(s) 253
SsiI CCGC 2 cut(s) 137, 243
StyD4I CCNGG 2 cut(s) 107, 266
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 22, 104
TfiI GAWTC 2 cut(s) 10, 24
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 1 cut(s) 87
TspGWI ACGGA 2 cut(s) 168, 216
TspRI CASTG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.