Rmu_ssc0000018.1_g000015

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000018.1
OG0005760
Physical Location & Seq
Reverse (-)
51386 .. 51709
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000018.1_g000015.1.cds

Sequence Viewer

Length: 324 bp
atggcgacgaatctgagcagtctgttctcatcaacaacgatgacgaaagccgagcctctgactcgctcagctaccaactcagtgagtcggctcttgccctcctcgacccggcagtctcaaccggagcgcgaaaacgcccaggtaaaatacgccggaagcgctgaacctgacgacgaaaagagtgaaaagcaagatgaggatggtgaaggtgacagagaaaagttggatttgaataaagagacgggtgagatcggcgggccgaaagggcctgagcagacccggttcggagattgggaaaaaaacggtcggtgctctgatttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

4.72

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AccII CGCG 1 cut(s) 129
AciI CCGC 1 cut(s) 255
AfeI AGCGCT 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 2 cut(s) 120, 233
Aor51HI AGCGCT 1 cut(s) 160
AoxI GGCC 2 cut(s) 257, 266
AspLEI GCGC 2 cut(s) 129, 161
AspS9I GGNCC 2 cut(s) 257, 266
AsuC2I CCSGG 2 cut(s) 109, 280
AsuHPI GGTGA 3 cut(s) 215, 221, 257
Bbv12I GWGCWC 1 cut(s) 314
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 140
BcnI CCSGG 2 cut(s) 109, 280
BcoDI GTCTC 2 cut(s) 120, 233
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 265
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 3 cut(s) 109, 140, 280
BmgT120I GGNCC 2 cut(s) 257, 266
BmrFI CCNGG 3 cut(s) 109, 140, 280
Bpu10I CCTNAGC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 109, 280
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 108
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 4 cut(s) 5, 81, 93, 261
BseRI GAGGAG 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 129
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 259, 268
BsiEI CGRYCG 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 4 cut(s) 109, 122, 153, 280
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 120, 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 259, 268
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 259, 268
BspCNI CTCAG 4 cut(s) 6, 80, 92, 262
BspFNI CGCG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 4 cut(s) 14, 67, 79, 270
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 129
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 129, 161
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 120, 233
BstMBI GATC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 158, 265
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 3 cut(s) 107, 138, 278
BstUI CGCG 1 cut(s) 129
BsuRI GGCC 2 cut(s) 259, 268
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 2 cut(s) 129, 161
Cfr13I GGNCC 2 cut(s) 257, 266
CviJI RGCY 6 cut(s) 50, 55, 71, 91, 259, 268
CviKI_1 RGCY 6 cut(s) 50, 55, 71, 91, 259, 268
DdeI CTNAG 4 cut(s) 14, 67, 79, 270
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
Eco47III AGCGCT 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 233
FauI CCCGC 1 cut(s) 248
FokI GGATG 1 cut(s) 212
GlaI GCGC 2 cut(s) 128, 160
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 259, 268
HapII CCGG 4 cut(s) 109, 122, 153, 280
HhaI GCGC 2 cut(s) 129, 161
Hin6I GCGC 2 cut(s) 127, 159
HinP1I GCGC 2 cut(s) 127, 159
HinfI GANTC 3 cut(s) 10, 61, 85
HpaII CCGG 4 cut(s) 109, 122, 153, 280
HphI GGTGA 3 cut(s) 215, 221, 257
Hpy188I TCNGA 4 cut(s) 15, 60, 287, 316
Hpy99I CGWCG 2 cut(s) 10, 176
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 265
HpyF3I CTNAG 4 cut(s) 14, 67, 79, 270
HspAI GCGC 2 cut(s) 127, 159
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 8 cut(s) 122, 125, 135, 152, 166, 180, 282, 293
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 314
MlyI GAGTC 2 cut(s) 55, 94
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 66, 109, 112, 190
MspI CCGG 4 cut(s) 109, 122, 153, 280
MspR9I CCNGG 3 cut(s) 109, 140, 280
MvaI CCWGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 2 cut(s) 158, 265
NciI CCSGG 2 cut(s) 109, 280
NdeII GATC 1 cut(s) 249
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 2 cut(s) 55, 93
PpsI GAGTC 2 cut(s) 55, 93
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspPI GGNCC 2 cut(s) 257, 266
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 257, 266
SchI GAGTC 2 cut(s) 55, 94
ScrFI CCNGG 3 cut(s) 109, 140, 280
SduI GDGCHC 1 cut(s) 314
SetI ASST 4 cut(s) 73, 144, 169, 211
SfiI GGCCNNNNNGGCC 1 cut(s) 265
SsiI CCGC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 107, 138, 278
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 104
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspRI CASTG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.