Rh7AG312600

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0005760
Physical Location & Seq
Reverse (-)
35190414 .. 35190927
514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG312600.1

Sequence Viewer

Length: 456 bp
ATGCTCCGATCCACCGTCTGGATCGTCGCCGCCTCCCCCTCCCTCTACGAGCGCCCCGTCCCACGCATCGCCGCCGATGTGGCCAAGAACTTCGACCGCGAGTTCTTGGATTCAAGTGGAATTCTCGAATACCGACCAAACATGGCGACGAATCTGAGCCGTCAATTCTCATCAACGATCGTAATGAAAGCCGAGCCTCTGGCTTGCTCAGCTGTCAACTCAGTGAGCCGGCTCTTGTCCTCCTCGACCGGGCAATCTCAACCGGAGCGCGAAAATGAGGAGGTGAAATACGACGGAAGCGCCAAACCAGACGACGGAAAGAGTGAAAAGCCAACTGAGGATGGTGAAGGTGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGCCGAAAGGGCCCGAGCCGACCCGGTACGGCGATTGGGAAAAAAACGGTCGGTGCTTTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

151

Amino Acids

16.64

Weight (kDa)

4.76

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 116 - 151 1.2e-17 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AccII CGCG 2 cut(s) 99, 270
AciI CCGC 4 cut(s) 30, 72, 97, 387
AclWI GGATC 2 cut(s) 3, 29
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 120
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 3 cut(s) 18, 249, 314
AgsI TTSAA 2 cut(s) 114, 364
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 3, 29
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 3 cut(s) 81, 389, 398
ApaI GGGCCC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 120
AspLEI GCGC 3 cut(s) 54, 270, 302
AspS9I GGNCC 3 cut(s) 389, 398, 399
AsuC2I CCSGG 2 cut(s) 250, 412
AsuHPI GGTGA 4 cut(s) 295, 356, 362, 389
AvaI CYCGRG 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 402
BalI TGGCCA 1 cut(s) 83
BanII GRGCYC 1 cut(s) 402
BccI CCATC 1 cut(s) 335
BceAI ACGGC 2 cut(s) 144, 433
BcnI CCSGG 2 cut(s) 250, 412
BcoDI GTCTC 1 cut(s) 365
BfoI RGCGCY 2 cut(s) 55, 303
BglI GCCNNNNNGGC 2 cut(s) 80, 397
BisI GCNGC 2 cut(s) 30, 72
BlpI GCTNAGC 1 cut(s) 208
BlsI GCNGC 2 cut(s) 31, 73
Bme1390I CCNGG 2 cut(s) 250, 412
BmeT110I CYCGRG 1 cut(s) 401
BmgT120I GGNCC 3 cut(s) 389, 398, 399
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 250, 412
BmsI GCATC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 208
BpuMI CCSGG 2 cut(s) 250, 412
BsaWI WCCGGW 1 cut(s) 262
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 249, 314
Bse118I RCCGGY 1 cut(s) 228
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 3 cut(s) 18, 249, 314
BseMII CTCAG 4 cut(s) 146, 222, 234, 327
BseRI GAGGAG 2 cut(s) 232, 293
BseSI GKGCMC 1 cut(s) 402
Bsh1236I CGCG 2 cut(s) 99, 270
Bsh1285I CGRYCG 4 cut(s) 97, 180, 249, 439
BshFI GGCC 3 cut(s) 83, 391, 400
BsiEI CGRYCG 4 cut(s) 97, 180, 249, 439
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 4 cut(s) 229, 249, 263, 412
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 3 cut(s) 18, 249, 314
BsmAI GTCTC 1 cut(s) 365
BsmBI CGTCTC 1 cut(s) 365
BsmFI GGGAC 1 cut(s) 44
BsnI GGCC 3 cut(s) 83, 391, 400
BsoBI CYCGRG 1 cut(s) 401
Bsp120I GGGCCC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 4 cut(s) 8, 21, 177, 381
Bsp1720I GCTNAGC 1 cut(s) 208
BspACI CCGC 4 cut(s) 30, 72, 97, 387
BspANI GGCC 3 cut(s) 83, 391, 400
BspCNI CTCAG 4 cut(s) 147, 221, 233, 328
BspFNI CGCG 2 cut(s) 99, 270
BspLI GGNNCC 1 cut(s) 400
BspPI GGATC 2 cut(s) 3, 29
BsrFI RCCGGY 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 228
BssMI GATC 4 cut(s) 8, 21, 177, 381
Bst4CI ACNGT 2 cut(s) 16, 437
BstC8I GCNNGC 3 cut(s) 205, 230, 389
BstDEI CTNAG 4 cut(s) 155, 208, 220, 336
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 2 cut(s) 99, 270
BstH2I RGCGCY 2 cut(s) 55, 303
BstHHI GCGC 3 cut(s) 54, 270, 302
BstKTI GATC 4 cut(s) 11, 24, 180, 384
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 4 cut(s) 8, 21, 177, 381
BstMCI CGRYCG 4 cut(s) 97, 180, 249, 439
BstMWI GCNNNNNNNGC 3 cut(s) 80, 209, 397
BstSCI CCNGG 2 cut(s) 248, 410
BstSLI GKGCMC 1 cut(s) 402
BstUI CGCG 2 cut(s) 99, 270
BsuRI GGCC 3 cut(s) 83, 391, 400
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 3 cut(s) 205, 230, 389
CfoI GCGC 3 cut(s) 54, 270, 302
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 389, 398, 399
Csp6I GTAC 1 cut(s) 415
CviAII CATG 1 cut(s) 142
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 4 cut(s) 155, 208, 220, 336
DpnI GATC 4 cut(s) 10, 23, 179, 383
DpnII GATC 4 cut(s) 8, 21, 177, 381
EaeI YGGCCR 1 cut(s) 81
Eco24I GRGCYC 1 cut(s) 402
Eco88I CYCGRG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 398
EcoRI GAATTC 1 cut(s) 120
EcoT38I GRGCYC 1 cut(s) 402
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 1 cut(s) 145
FaiI YATR 1 cut(s) 143
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 141
FauI CCCGC 1 cut(s) 380
Fnu4HI GCNGC 2 cut(s) 30, 72
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 402
Fsp4HI GCNGC 2 cut(s) 30, 72
GlaI GCGC 3 cut(s) 53, 269, 301
GluI GCNGC 2 cut(s) 30, 72
HaeII RGCGCY 2 cut(s) 55, 303
HaeIII GGCC 3 cut(s) 83, 391, 400
HapII CCGG 4 cut(s) 229, 249, 263, 412
HhaI GCGC 3 cut(s) 54, 270, 302
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 3 cut(s) 52, 268, 300
HinP1I GCGC 3 cut(s) 52, 268, 300
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 110, 151
HpaII CCGG 4 cut(s) 229, 249, 263, 412
HphI GGTGA 4 cut(s) 295, 356, 362, 389
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 8, 156
Hpy188III TCNNGA 2 cut(s) 19, 125
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 4 cut(s) 29, 151, 296, 317
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 2 cut(s) 16, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 209, 397
HpyF3I CTNAG 4 cut(s) 155, 208, 220, 336
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 3 cut(s) 52, 268, 300
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
Kzo9I GATC 4 cut(s) 8, 21, 177, 381
LmnI GCTCC 2 cut(s) 9, 265
LpnPI CCDG 7 cut(s) 4, 185, 242, 262, 276, 321, 425
LweI GCATC 1 cut(s) 75
MalI GATC 4 cut(s) 10, 23, 179, 383
MboI GATC 4 cut(s) 8, 21, 177, 381
MhlI GDGCHC 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 83
MluCI AATT 2 cut(s) 120, 164
MluNI TGGCCA 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 9 cut(s) 43, 49, 53, 207, 250, 253, 271, 274, 331
Mox20I TGGCCA 1 cut(s) 83
MroNI GCCGGC 1 cut(s) 228
MscI TGGCCA 1 cut(s) 83
MseI TTAA 1 cut(s) 454
Msp20I TGGCCA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 4 cut(s) 229, 249, 263, 412
MspR9I CCNGG 2 cut(s) 250, 412
MvnI CGCG 2 cut(s) 99, 270
MwoI GCNNNNNNNGC 3 cut(s) 80, 209, 397
NaeI GCCGGC 1 cut(s) 230
NciI CCSGG 2 cut(s) 250, 412
NdeII GATC 4 cut(s) 8, 21, 177, 381
NgoMIV GCCGGC 1 cut(s) 228
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 1 cut(s) 400
NmeAIII GCCGAG 1 cut(s) 217
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 230
PfeI GAWTC 2 cut(s) 110, 151
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 2 cut(s) 31, 73
Ple19I CGATCG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 400
PspOMI GGGCCC 1 cut(s) 398
PspPI GGNCC 3 cut(s) 389, 398, 399
PvuI CGATCG 1 cut(s) 180
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
SaqAI TTAA 1 cut(s) 454
SatI GCNGC 2 cut(s) 30, 72
Sau3AI GATC 4 cut(s) 8, 21, 177, 381
Sau96I GGNCC 3 cut(s) 389, 398, 399
ScrFI CCNGG 2 cut(s) 250, 412
SduI GDGCHC 1 cut(s) 402
SetI ASST 3 cut(s) 214, 285, 352
SfaNI GCATC 1 cut(s) 75
SfiI GGCCNNNNNGGCC 1 cut(s) 397
Sse9I AATT 2 cut(s) 120, 164
SsiI CCGC 4 cut(s) 30, 72, 97, 387
StyD4I CCNGG 2 cut(s) 248, 410
TaaI ACNGT 2 cut(s) 16, 437
TaqI TCGA 3 cut(s) 93, 126, 245
TasI AATT 2 cut(s) 120, 164
TauI GCSGC 2 cut(s) 32, 74
TfiI GAWTC 2 cut(s) 110, 151
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 2 cut(s) 309, 330
TspRI CASTG 1 cut(s) 228
Van91I CCANNNNNTGG 1 cut(s) 18
XapI RAATTY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.