Rroxscaffold_4G00278850

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005760
Physical Location & Seq
Reverse (-)
1796212 .. 1799333
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278850.1

Sequence Viewer

Length: 411 bp
ATGGCGACCTATCTGAGCCGTCGATTCTCATCAACGATCGTAACGAAAGCCGAGCCTCTGGCTCGCTCAGCTGTCGACTCAGTGAGTCGGCTCTTGTCCTCCTCGACCGGGCTATCTCAACCGGAGCGCGAAAACGCGGAGGTGAAATACGACGGAAGCGCCAAAACGGACGACGGAGAGAGTGAAAAGCGAACTGAGGATGGTCAAGATGATGGAGATGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGCCGAAAGGGCCCGAGCCGACCCGGTTCGGCGACTGGGAAAAAAACGACGACTACTCCGATCACATCTATACATCGGTTCAAACTTCAGAGGTTCGACTATGTCGGTTTTGTAGAAGATACAAACTGCACTTTCAAATGGATGGTTTGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

136

Amino Acids

15.26

Weight (kDa)

4.8

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 63 - 101 6.6e-12 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 75
AccII CGCG 2 cut(s) 129, 137
AciI CCGC 2 cut(s) 137, 255
AcuI CTGAAG 1 cut(s) 327
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 3 cut(s) 232, 338, 392
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 257, 266
ApaI GGGCCC 1 cut(s) 270
AspLEI GCGC 2 cut(s) 129, 161
AspS9I GGNCC 3 cut(s) 257, 266, 267
AsuC2I CCSGG 2 cut(s) 109, 280
AsuHPI GGTGA 2 cut(s) 154, 257
AvaI CYCGRG 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 270
BccI CCATC 3 cut(s) 194, 206, 392
BceAI ACGGC 1 cut(s) 3
BcnI CCSGG 2 cut(s) 109, 280
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 409
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 265
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 109, 280
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 3 cut(s) 257, 266, 267
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 109, 280
BmrI ACTGGG 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 109, 280
BsaBI GATNNNNATC 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 296
Bse8I GATNNNNATC 1 cut(s) 28
BseGI GGATG 2 cut(s) 205, 403
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 4 cut(s) 5, 81, 93, 186
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 368
Bsh1236I CGCG 2 cut(s) 129, 137
Bsh1285I CGRYCG 2 cut(s) 39, 108
BshFI GGCC 2 cut(s) 259, 268
BsiEI CGRYCG 2 cut(s) 39, 108
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 3 cut(s) 108, 122, 280
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 259, 268
BsoBI CYCGRG 1 cut(s) 269
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 36, 249, 316
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 2 cut(s) 137, 255
BspANI GGCC 2 cut(s) 259, 268
BspCNI CTCAG 4 cut(s) 6, 80, 92, 187
BspFNI CGCG 2 cut(s) 129, 137
BspLI GGNNCC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 296
BssMI GATC 3 cut(s) 36, 249, 316
BstC8I GCNNGC 2 cut(s) 64, 257
BstDEI CTNAG 4 cut(s) 14, 67, 79, 195
BstF5I GGATG 2 cut(s) 205, 403
BstFNI CGCG 2 cut(s) 129, 137
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 129, 161
BstKTI GATC 3 cut(s) 39, 252, 319
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 3 cut(s) 36, 249, 316
BstMCI CGRYCG 2 cut(s) 39, 108
BstMWI GCNNNNNNNGC 2 cut(s) 68, 265
BstSCI CCNGG 2 cut(s) 107, 278
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 2 cut(s) 129, 137
BsuRI GGCC 2 cut(s) 259, 268
BtsCI GGATG 2 cut(s) 205, 403
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 64, 257
CfoI GCGC 2 cut(s) 129, 161
Cfr13I GGNCC 3 cut(s) 257, 266, 267
DdeI CTNAG 4 cut(s) 14, 67, 79, 195
DpnI GATC 3 cut(s) 38, 251, 318
DpnII GATC 3 cut(s) 36, 249, 316
Eco24I GRGCYC 1 cut(s) 270
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 233
FaiI YATR 2 cut(s) 327, 358
FauI CCCGC 1 cut(s) 248
FblI GTMKAC 1 cut(s) 75
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 270
FspBI CTAG 1 cut(s) 409
GlaI GCGC 2 cut(s) 128, 160
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 259, 268
HapII CCGG 3 cut(s) 108, 122, 280
HhaI GCGC 2 cut(s) 129, 161
Hin6I GCGC 2 cut(s) 127, 159
HinP1I GCGC 2 cut(s) 127, 159
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 24, 77, 85
HpaII CCGG 3 cut(s) 108, 122, 280
HphI GGTGA 2 cut(s) 154, 257
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 15, 316, 346
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 4 cut(s) 24, 155, 176, 308
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 265
HpyF3I CTNAG 4 cut(s) 14, 67, 79, 195
HspAI GCGC 2 cut(s) 127, 159
Kzo9I GATC 3 cut(s) 36, 249, 316
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 5 cut(s) 44, 121, 135, 277, 293
MaeI CTAG 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 40
MalI GATC 3 cut(s) 38, 251, 318
MboI GATC 3 cut(s) 36, 249, 316
MboII GAAGA 1 cut(s) 384
MhlI GDGCHC 1 cut(s) 270
MlyI GAGTC 2 cut(s) 71, 94
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 6 cut(s) 66, 109, 112, 133, 190, 340
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 3 cut(s) 108, 122, 280
MspR9I CCNGG 2 cut(s) 109, 280
MvnI CGCG 2 cut(s) 129, 137
MwoI GCNNNNNNNGC 2 cut(s) 68, 265
NciI CCSGG 2 cut(s) 109, 280
NdeII GATC 3 cut(s) 36, 249, 316
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 76
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 312
PfeI GAWTC 1 cut(s) 24
PflFI GACNNNGTC 1 cut(s) 357
Ple19I CGATCG 1 cut(s) 39
PleI GAGTC 2 cut(s) 71, 93
PpsI GAGTC 2 cut(s) 71, 93
PspN4I GGNNCC 1 cut(s) 268
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 3 cut(s) 257, 266, 267
PsyI GACNNNGTC 1 cut(s) 357
PvuI CGATCG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 71
SalI GTCGAC 1 cut(s) 74
Sau3AI GATC 3 cut(s) 36, 249, 316
Sau96I GGNCC 3 cut(s) 257, 266, 267
SchI GAGTC 2 cut(s) 71, 94
ScrFI CCNGG 2 cut(s) 109, 280
SduI GDGCHC 1 cut(s) 270
SetI ASST 5 cut(s) 11, 73, 144, 351, 410
SfiI GGCCNNNNNGGCC 1 cut(s) 265
SsiI CCGC 2 cut(s) 137, 255
SspMI CTAG 1 cut(s) 409
StyD4I CCNGG 2 cut(s) 107, 278
TaqI TCGA 4 cut(s) 22, 75, 104, 352
TfiI GAWTC 1 cut(s) 24
TscAI CASTG 1 cut(s) 87
TspGWI ACGGA 3 cut(s) 168, 182, 189
TspRI CASTG 1 cut(s) 87
Tth111I GACNNNGTC 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.