RLG00000026252

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0005760
Physical Location & Seq
Reverse (-)
1642949 .. 1643272
324 bp
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UTR
Exon/CDS
Intron
RLM00000026252

Sequence Viewer

Length: 324 bp
ATGGCGACCAATCTGAGCCGTCTATTCTCATCAACGATCGTAACGAAAGCCGAGCCTCTGGCTCGCTCAGCTGTCAACTCAGTGAGCCGGCTCTTGTCCTCCTCGACCGGGCAATCTCAACCGGAGCGCCAAAACGCGGAGGTGAAATACGACGGAAGCGCCAAACCGGACGACGGAAAGAGTGAAAGGCGAAATGAGGATGGTGAAGATGATGGAGATGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGCCGAAAGGGCCCGAGCCGACCCGGTACGGCGATTGGGAAAAAAACGGTCGGTGCTCTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

108

Amino Acids

11.64

Weight (kDa)

4.68

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 64 - 107 1.3e-18 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 2 cut(s) 137, 255
AfaI GTAC 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 108, 136, 173
AgsI TTSAA 1 cut(s) 232
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 269
AoxI GGCC 2 cut(s) 257, 266
ApaI GGGCCC 1 cut(s) 270
AspLEI GCGC 2 cut(s) 129, 161
AspS9I GGNCC 3 cut(s) 257, 266, 267
AsuC2I CCSGG 2 cut(s) 109, 280
AsuHPI GGTGA 3 cut(s) 154, 215, 257
AvaI CYCGRG 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 270
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 314
BccI CCATC 2 cut(s) 194, 206
BceAI ACGGC 2 cut(s) 3, 301
BcnI CCSGG 2 cut(s) 109, 280
BcoDI GTCTC 1 cut(s) 233
BfoI RGCGCY 2 cut(s) 130, 162
BglI GCCNNNNNGGC 1 cut(s) 265
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 109, 280
BmeT110I CYCGRG 1 cut(s) 269
BmgT120I GGNCC 3 cut(s) 257, 266, 267
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 109, 280
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 109, 280
BsaWI WCCGGW 2 cut(s) 121, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 136, 173
Bse118I RCCGGY 1 cut(s) 87
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 3 cut(s) 108, 136, 173
BseMII CTCAG 3 cut(s) 5, 81, 93
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 270
Bsh1236I CGCG 1 cut(s) 137
Bsh1285I CGRYCG 3 cut(s) 39, 108, 307
BshFI GGCC 2 cut(s) 259, 268
BsiEI CGRYCG 3 cut(s) 39, 108, 307
BsiHKAI GWGCWC 1 cut(s) 314
BsiHKCI CYCGRG 1 cut(s) 269
BsiSI CCGG 5 cut(s) 88, 108, 122, 167, 280
BslI CCNNNNNNNGG 3 cut(s) 108, 136, 173
BsmAI GTCTC 1 cut(s) 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 259, 268
BsoBI CYCGRG 1 cut(s) 269
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 270, 314
Bsp143I GATC 2 cut(s) 36, 249
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 2 cut(s) 137, 255
BspANI GGCC 2 cut(s) 259, 268
BspCNI CTCAG 3 cut(s) 6, 80, 92
BspFNI CGCG 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 268
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssMI GATC 2 cut(s) 36, 249
Bst4CI ACNGT 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 64, 89, 257
BstDEI CTNAG 3 cut(s) 14, 67, 79
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 2 cut(s) 130, 162
BstHHI GCGC 2 cut(s) 129, 161
BstKTI GATC 2 cut(s) 39, 252
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 2 cut(s) 36, 249
BstMCI CGRYCG 3 cut(s) 39, 108, 307
BstMWI GCNNNNNNNGC 2 cut(s) 68, 265
BstSCI CCNGG 2 cut(s) 107, 278
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 137
BsuRI GGCC 2 cut(s) 259, 268
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 3 cut(s) 64, 89, 257
CfoI GCGC 2 cut(s) 129, 161
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 257, 266, 267
Csp6I GTAC 1 cut(s) 283
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 3 cut(s) 14, 67, 79
DpnI GATC 2 cut(s) 38, 251
DpnII GATC 2 cut(s) 36, 249
Eco24I GRGCYC 1 cut(s) 270
Eco88I CYCGRG 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 233
FauI CCCGC 1 cut(s) 248
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 270
GlaI GCGC 2 cut(s) 128, 160
HaeII RGCGCY 2 cut(s) 130, 162
HaeIII GGCC 2 cut(s) 259, 268
HapII CCGG 5 cut(s) 88, 108, 122, 167, 280
HhaI GCGC 2 cut(s) 129, 161
Hin6I GCGC 2 cut(s) 127, 159
HinP1I GCGC 2 cut(s) 127, 159
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HpaII CCGG 5 cut(s) 88, 108, 122, 167, 280
HphI GGTGA 3 cut(s) 154, 215, 257
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 15, 316
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 155, 176
HpyCH4III ACNGT 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 265
HpyF3I CTNAG 3 cut(s) 14, 67, 79
HspAI GCGC 2 cut(s) 127, 159
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 2 cut(s) 36, 249
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 44, 101, 121, 135, 180, 293
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 38, 251
MboI GATC 2 cut(s) 36, 249
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 270, 314
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 5 cut(s) 66, 109, 112, 133, 190
MroNI GCCGGC 1 cut(s) 87
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 5 cut(s) 88, 108, 122, 167, 280
MspR9I CCNGG 2 cut(s) 109, 280
MvnI CGCG 1 cut(s) 137
MwoI GCNNNNNNNGC 2 cut(s) 68, 265
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 109, 280
NdeII GATC 2 cut(s) 36, 249
NgoMIV GCCGGC 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 268
NmeAIII GCCGAG 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 89
Ple19I CGATCG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 268
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 3 cut(s) 257, 266, 267
PvuI CGATCG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
Sau3AI GATC 2 cut(s) 36, 249
Sau96I GGNCC 3 cut(s) 257, 266, 267
ScrFI CCNGG 2 cut(s) 109, 280
SduI GDGCHC 2 cut(s) 270, 314
SetI ASST 2 cut(s) 73, 144
SfiI GGCCNNNNNGGCC 1 cut(s) 265
SsiI CCGC 2 cut(s) 137, 255
StyD4I CCNGG 2 cut(s) 107, 278
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 1 cut(s) 104
TscAI CASTG 1 cut(s) 87
TspGWI ACGGA 2 cut(s) 168, 189
TspRI CASTG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.