Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0005760

Physical Location & Seq

Genomic Coordinates Reverse (-)

20361242 .. 20362114

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22920.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGCATTCCAGAAAGGGATCCTTTTCGGATTCTTTATTTCTAATCCATCAAATCAGGAAATTCTTGCAGTTAAAAATTGATCAACGGTTACAAATAGGAGCTCACTTTAAAAGTTATAATAACTTCAACCGCCCTAATTTGGTGGATCAGAAGGAATGGATCCAGAAAGGATCTCTTTCTGACACGACGCCGTATCAACAGCCACATTGTTTTCCCCTCCTGCCTCCTTCCTGTTCTATTTCACCCCTCCTTCGCAACAACGGGCAAGGAAAAGGAAAAGAAGGACAGAAATCAGCAAAGATGGCGATCAATCTGGGCCGTCTATTTTCATCAACGACCATCCTCTCAACCTCCACAACGGAGCCTCTAACTCGCGCCGCCTTCAACTCGGTGAGTCGGCTCCTCTGCTCGTCAGCCTCGCCATCGCAGCCCCAGCACGAAAAACCCAGCAAGGAGCAAAGTGAACCCATCGTAGAAAAACACGAAAATCAAGCTGAAGAAGACGACGACGACGACGACGATGATGGGTTGGTGAATAAAGAGACCGGCGAGATCGGTGGGCCCAGAGGGCCGGAGCCCACCCGTTTCGGCGATTGGGAGCGAAACGGTCGGTGCTGTGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1674

Protein Analysis

209

Amino Acids

23.31

Weight (kDa)

6.31

Isoelectric Point (pI)

45.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67490
prunus_persica	Prupe.2G311900_v2.0.a1
pyrus_communis	pycom01g22920
rosa_chinensis	RchiOBHm_Chr1g0381021
rosa_laevigata	RLG00000020376 RLG00000020535 RLG00000026252
rosa_multiflora	Rmu_sc0004494.1_g000002 Rmu_sc0035423.1_g000001 Rmu_ssc0000018.1_g000015
rosa_roxburghii	Rroxscaffold_4G00278850
rosa_rugosa	Rorug01G0065100 Rorug01G0426500 Rorug02G0015100 Rorug07G0276200 Rorug07G0276300
rosa_samantha	Rh1AG450300 Rh1BG406300 Rh1CG420300 Rh1DG436800 Rh7AG312600 Rh7AG431400 Rh7BG404400 Rh7CG331200 Rh7CG450200 Rh7DG420800
rosa_wichuraiana	Rw1G039240 Rw7G035620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
AccII	CGCG	1 cut(s)	375
AciI	CCGC	2 cut(s)	130, 378
AclWI	GGATC	6 cut(s)	12, 25, 153, 154, 167, 178
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	139
AgsI	TTSAA	2 cut(s)	127, 385
AluBI	AGCT	2 cut(s)	101, 494
AluI	AGCT	2 cut(s)	101, 494
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	1 cut(s)	536
AlwI	GGATC	6 cut(s)	12, 25, 153, 154, 167, 178
AoxI	GGCC	3 cut(s)	316, 560, 569
ApaI	GGGCCC	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	377
AspS9I	GGNCC	4 cut(s)	316, 560, 561, 569
AsuHPI	GGTGA	3 cut(s)	234, 403, 544
BaeGI	GKGCMC	1 cut(s)	564
BamHI	GGATCC	2 cut(s)	17, 159
BanII	GRGCYC	3 cut(s)	103, 564, 579
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	6 cut(s)	54, 295, 347, 430, 476, 518
BceAI	ACGGC	2 cut(s)	175, 303
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	536
BglI	GCCNNNNNGGC	1 cut(s)	568
BisI	GCNGC	2 cut(s)	378, 428
BlsI	GCNGC	2 cut(s)	379, 429
BmgT120I	GGNCC	4 cut(s)	316, 560, 561, 569
BmiI	GGNNCC	6 cut(s)	19, 161, 363, 401, 562, 576
BpiI	GAAGAC	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	305
BsaHI	GRCGYC	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	536
Bsc4I	CCNNNNNNNGG	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	545
Bse8I	GATNNNNATC	1 cut(s)	305
BseGI	GGATG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	1 cut(s)	439
BseYI	CCCAGC	2 cut(s)	432, 446
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	3 cut(s)	318, 562, 571
BsiEI	CGRYCG	1 cut(s)	610
BsiHKAI	GWGCWC	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	546, 572
BslI	CCNNNNNNNGG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	536
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	3 cut(s)	318, 562, 571
Bso31I	GGTCTC	1 cut(s)	536
Bsp120I	GGGCCC	1 cut(s)	560
Bsp1286I	GDGCHC	3 cut(s)	103, 564, 579
Bsp143I	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
BspACI	CCGC	2 cut(s)	130, 378
BspANI	GGCC	3 cut(s)	318, 562, 571
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	6 cut(s)	19, 161, 363, 401, 562, 576
BspPI	GGATC	6 cut(s)	12, 25, 153, 154, 167, 178
BspTNI	GGTCTC	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	545
BssMI	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
BssNI	GRCGYC	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	87, 608
BstACI	GRCGYC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	339
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	377
BstKTI	GATC	7 cut(s)	20, 82, 148, 162, 173, 309, 555
BstMAI	GTCTC	1 cut(s)	536
BstMBI	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 427, 433, 568
BstSLI	GKGCMC	1 cut(s)	564
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	507
BstX2I	RGATCY	3 cut(s)	17, 159, 170
BstYI	RGATCY	3 cut(s)	17, 159, 170
BsuRI	GGCC	3 cut(s)	318, 562, 571
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	339
CfoI	GCGC	1 cut(s)	377
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	4 cut(s)	316, 560, 561, 569
CseI	GACGC	1 cut(s)	196
DpnI	GATC	7 cut(s)	19, 81, 147, 161, 172, 308, 554
DpnII	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
DraI	TTTAAA	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	101
Eco24I	GRGCYC	3 cut(s)	103, 564, 579
Eco31I	GGTCTC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	516
EcoICRI	GAGCTC	1 cut(s)	101
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	3 cut(s)	103, 564, 579
FaiI	YATR	1 cut(s)	117
FalI	AAGNNNNNCTT	3 cut(s)	37, 159, 191
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	378, 428
FokI	GGATG	1 cut(s)	326
FriOI	GRGCYC	3 cut(s)	103, 564, 579
Fsp4HI	GCNGC	2 cut(s)	378, 428
GlaI	GCGC	1 cut(s)	376
GluI	GCNGC	2 cut(s)	378, 428
GsaI	CCCAGC	2 cut(s)	436, 450
HaeIII	GGCC	3 cut(s)	318, 562, 571
HapII	CCGG	2 cut(s)	546, 572
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	377
Hin1I	GRCGYC	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	375
HinP1I	GCGC	1 cut(s)	375
HinfI	GANTC	2 cut(s)	29, 394
HpaII	CCGG	2 cut(s)	546, 572
HphI	GGTGA	3 cut(s)	234, 403, 544
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	3 cut(s)	28, 150, 181
Hpy188III	TCNNGA	3 cut(s)	9, 55, 163
Hpy8I	GTNNAC	1 cut(s)	464
Hpy99I	CGWCG	6 cut(s)	190, 509, 512, 515, 518, 521
HpyAV	CCTTC	5 cut(s)	145, 237, 260, 275, 391
HpyCH4III	ACNGT	2 cut(s)	87, 608
HpyCH4V	TGCA	2 cut(s)	4, 67
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 427, 433, 568
Hsp92I	GRCGYC	1 cut(s)	188
HspAI	GCGC	1 cut(s)	375
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
LmnI	GCTCC	6 cut(s)	98, 361, 405, 454, 574, 598
Lsp1109I	GCAGC	1 cut(s)	439
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	7 cut(s)	19, 81, 147, 161, 172, 308, 554
MboI	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
MboII	GAAGA	2 cut(s)	509, 512
MflI	RGATCY	3 cut(s)	17, 159, 170
MhlI	GDGCHC	3 cut(s)	103, 564, 579
MluCI	AATT	3 cut(s)	59, 75, 136
MlyI	GAGTC	1 cut(s)	403
MnlI	CCTC	9 cut(s)	227, 234, 257, 353, 361, 375, 413, 427, 560
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	71, 108
MspI	CCGG	2 cut(s)	546, 572
Mva1269I	GAATGC	1 cut(s)	4
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	302, 427, 433, 568
NdeII	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
NlaIV	GGNNCC	6 cut(s)	19, 161, 363, 401, 562, 576
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	3 cut(s)	510, 513, 516
PctI	GAATGC	1 cut(s)	4
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	379, 429
PleI	GAGTC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	402
PsiI	TTATAA	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	103
PspFI	CCCAGC	2 cut(s)	432, 446
PspN4I	GGNNCC	6 cut(s)	19, 161, 363, 401, 562, 576
PspOMI	GGGCCC	1 cut(s)	560
PspPI	GGNCC	4 cut(s)	316, 560, 561, 569
PsuI	RGATCY	3 cut(s)	17, 159, 170
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	71, 108
SatI	GCNGC	2 cut(s)	378, 428
Sau3AI	GATC	7 cut(s)	17, 79, 145, 159, 170, 306, 552
Sau96I	GGNCC	4 cut(s)	316, 560, 561, 569
SchI	GAGTC	1 cut(s)	403
SduI	GDGCHC	3 cut(s)	103, 564, 579
SetI	ASST	3 cut(s)	103, 353, 496
SfiI	GGCCNNNNNGGCC	1 cut(s)	568
Sse9I	AATT	3 cut(s)	59, 75, 136
SsiI	CCGC	2 cut(s)	130, 378
SstI	GAGCTC	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	87, 608
TasI	AATT	3 cut(s)	59, 75, 136
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	71, 108
Tru9I	TTAA	2 cut(s)	71, 108
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	374
XapI	RAATTY	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.