RLG00000020535

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005760
Physical Location & Seq
Reverse (-)
66051219 .. 66051533
315 bp
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UTR
Exon/CDS
Intron
RLM00000020535

Sequence Viewer

Length: 315 bp
ATGGCTACGAATCTGAGCCGCCGATTCTCATCAACGATCGTAACGAAAGCTGAGCCTCTAGCTCGCAAAGCTGTCAACTCAGTGAGCCGGCTCTTGTCCTCCTCGACCGGGCAATCTCAACCGAAGCGAGAAAACGAGAAGGTGAAATACGACGGAAGCGCCAAACCTAACGACGGAAAGAGTGAAAAGCCAACTAAGGATGGTGAAGATGAGTTGGACTTGAATAAAGAGATGGGTGAGATTGGCGGGCCGAAAGAGCCCAAGCCGACCCGGTACGGCGATTGGGAAAAAAACGGTTGGTGCTCTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

8.68

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 63 - 104 5e-13 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 19, 246
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 108, 173
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 3 cut(s) 50, 62, 71
AluI AGCT 3 cut(s) 50, 62, 71
Alw21I GWGCWC 1 cut(s) 305
AoxI GGCC 1 cut(s) 248
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 2 cut(s) 109, 271
AsuHPI GGTGA 3 cut(s) 154, 215, 248
BanII GRGCYC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 131, 163
Bbv12I GWGCWC 1 cut(s) 305
BccI CCATC 2 cut(s) 194, 226
BceAI ACGGC 1 cut(s) 292
BcnI CCSGG 2 cut(s) 109, 271
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 1 cut(s) 19
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 20
Bme1390I CCNGG 2 cut(s) 109, 271
BmgT120I GGNCC 1 cut(s) 248
BmrFI CCNGG 2 cut(s) 109, 271
Bpu1102I GCTNAGC 1 cut(s) 51
BpuMI CCSGG 2 cut(s) 109, 271
BsaBI GATNNNNATC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 173
Bse118I RCCGGY 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 28
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 108, 173
BseMII CTCAG 3 cut(s) 5, 42, 93
BseRI GAGGAG 1 cut(s) 91
Bsh1285I CGRYCG 2 cut(s) 39, 108
BshFI GGCC 1 cut(s) 250
BsiEI CGRYCG 2 cut(s) 39, 108
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 3 cut(s) 88, 108, 271
BslI CCNNNNNNNGG 2 cut(s) 108, 173
BsnI GGCC 1 cut(s) 250
Bsp1286I GDGCHC 2 cut(s) 261, 305
Bsp143I GATC 1 cut(s) 36
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 2 cut(s) 19, 246
BspANI GGCC 1 cut(s) 250
BspCNI CTCAG 3 cut(s) 6, 43, 92
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 64, 89, 248
BstDEI CTNAG 4 cut(s) 14, 51, 79, 195
BstF5I GGATG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMCI CGRYCG 2 cut(s) 39, 108
BstMWI GCNNNNNNNGC 2 cut(s) 68, 256
BstSCI CCNGG 2 cut(s) 107, 269
BsuRI GGCC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 3 cut(s) 64, 89, 248
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 274
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 4 cut(s) 14, 51, 79, 195
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 261
FauI CCCGC 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 1 cut(s) 19
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 19
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 1 cut(s) 250
HapII CCGG 3 cut(s) 88, 108, 271
HhaI GCGC 1 cut(s) 161
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 10, 24
HpaII CCGG 3 cut(s) 88, 108, 271
HphI GGTGA 3 cut(s) 154, 215, 248
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 15, 307
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 155, 176
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 256
HpyF3I CTNAG 4 cut(s) 14, 51, 79, 195
HspAI GCGC 1 cut(s) 159
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 3 cut(s) 101, 121, 284
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 1 cut(s) 40
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 261, 305
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 66, 109, 112
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 1 cut(s) 313
MspI CCGG 3 cut(s) 88, 108, 271
MspR9I CCNGG 2 cut(s) 109, 271
MwoI GCNNNNNNNGC 2 cut(s) 68, 256
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 109, 271
NdeII GATC 1 cut(s) 36
NgoMIV GCCGGC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 10, 24
PkrI GCNGC 1 cut(s) 20
Ple19I CGATCG 1 cut(s) 39
PspPI GGNCC 1 cut(s) 248
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 1 cut(s) 19
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 109, 271
SduI GDGCHC 2 cut(s) 261, 305
SetI ASST 5 cut(s) 52, 64, 73, 144, 169
SsiI CCGC 2 cut(s) 19, 246
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 107, 269
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 1 cut(s) 104
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 2 cut(s) 10, 24
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 87
TspGWI ACGGA 2 cut(s) 168, 189
TspRI CASTG 1 cut(s) 87
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.