Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005760

Physical Location & Seq

Genomic Coordinates Forward (+)

52659276 .. 52660081

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0426500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCATGATCTCGTTATTGATTTGGCACGTTGGGTTGCAGGAAATTCATGTTCTACAGTGGAGGATATGCATAATTATGACTCGCATCTTAGATGTTTGCCCCAGGTTCGTCATTCGTCTTACATTCGTGGTAAGTATGATGGGGTTGAAAAGTTTGAGGTCTATTCGGAAGCTACATGTCTACAGACATTCTCACCACTTTCACTTTCAGATCCCTGCTTGGATTATAGATTTCTGGCTCAGAAGCATCTACGTTATCTTGATCTTTCTGACACTCAAATAAGAAGTTTGTCGGAGTCGACAAGCACTCTCTACAACTTACAGACATTGATATTACACGGTTGTGGTAAGTTGAAGGCACTACCCACAGGCATGAGGAATCTAGTTAATTTGCGTCATCTCATAAATTCAGATACATCTTCATTGGAAGAAATGCCTCCTCAGCTTGGTCGATTGACTAATCTCCAAACATTGCCTAAATTTGTTATTGGCAAAGGTAGTGGACCAGCAGTAAGAGAGATTGGGTCATTGTTACATGTGCAGGGGACATTGCACCTCTCAAGACTAGAGAATGTGATTTGTGTCGAAAATGCTAGGAGTGCCAACTTAAAGAGCAAGGAGAGGCTTGAAGCCTTATTACTTAAATGGTCTTCTTCGAGTGTCTCAACAAAAATTGCAGCCCTTGTGCTTGACATGTTACAACCTCATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1674

Protein Analysis

237

Amino Acids

26.5

Weight (kDa)

8.21

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	82 - 121	6.1e-06	Leucine Rich repeats (2 copies)
LRR_14	PF23598	83 - 187	3.7e-13	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	172 - 237	4.3e-11	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67490
prunus_persica	Prupe.2G311900_v2.0.a1
pyrus_communis	pycom01g22920
rosa_chinensis	RchiOBHm_Chr1g0381021
rosa_laevigata	RLG00000020376 RLG00000020535 RLG00000026252
rosa_multiflora	Rmu_sc0004494.1_g000002 Rmu_sc0035423.1_g000001 Rmu_ssc0000018.1_g000015
rosa_roxburghii	Rroxscaffold_4G00278850
rosa_rugosa	Rorug01G0065100 Rorug01G0426500 Rorug02G0015100 Rorug07G0276200 Rorug07G0276300
rosa_samantha	Rh1AG450300 Rh1BG406300 Rh1CG420300 Rh1DG436800 Rh7AG312600 Rh7AG431400 Rh7BG404400 Rh7CG331200 Rh7CG450200 Rh7DG420800
rosa_wichuraiana	Rw1G039240 Rw7G035620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	181, 299
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	3 cut(s)	43, 406, 479
AfiI	CCNNNNNNNGG	1 cut(s)	446
AflIII	ACRYGT	3 cut(s)	176, 535, 693
AgsI	TTSAA	3 cut(s)	149, 355, 629
AjnI	CCWGG	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	342
AluBI	AGCT	3 cut(s)	173, 445, 711
AluI	AGCT	3 cut(s)	173, 445, 711
Alw26I	GTCTC	1 cut(s)	667
AlwI	GGATC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	677
ApoI	RAATTY	3 cut(s)	43, 406, 479
AspS9I	GGNCC	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	503
BarI	GAAGNNNNNNTAC	2 cut(s)	621, 653
BbsI	GAAGAC	1 cut(s)	642
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	689
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	667
BfaI	CTAG	4 cut(s)	383, 566, 594, 712
BfmI	CTRYAG	2 cut(s)	54, 182
BisI	GCNGC	1 cut(s)	678
BlsI	GCNGC	1 cut(s)	679
Bme1390I	CCNGG	1 cut(s)	104
Bme18I	GGWCC	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	503
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	2 cut(s)	94, 256
BpiI	GAAGAC	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	544
BsaJI	CCNNGG	1 cut(s)	102
Bsc4I	CCNNNNNNNGG	1 cut(s)	446
Bse3DI	GCAATG	2 cut(s)	470, 548
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	446
BseMI	GCAATG	2 cut(s)	470, 548
BseMII	CTCAG	2 cut(s)	254, 455
BseRI	GAGGAG	1 cut(s)	429
BseXI	GCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	560
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	7, 211, 262
BspCNI	CTCAG	2 cut(s)	253, 454
BspPI	GGATC	1 cut(s)	206
BsrDI	GCAATG	2 cut(s)	470, 548
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	3 cut(s)	7, 211, 262
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	58, 341
BstDEI	CTNAG	3 cut(s)	89, 240, 441
BstKTI	GATC	3 cut(s)	10, 214, 265
BstMAI	GTCTC	1 cut(s)	667
BstMBI	GATC	3 cut(s)	7, 211, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	442, 599
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	3 cut(s)	180, 539, 697
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	2 cut(s)	54, 182
BstV1I	GCAGC	1 cut(s)	689
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	383
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	6 cut(s)	5, 48, 177, 373, 536, 694
CviJI	RGCY	7 cut(s)	173, 239, 445, 625, 632, 680, 711
CviKI_1	RGCY	7 cut(s)	173, 239, 445, 625, 632, 680, 711
DdeI	CTNAG	3 cut(s)	89, 240, 441
DpnI	GATC	3 cut(s)	9, 213, 264
DpnII	GATC	3 cut(s)	7, 211, 262
Eco47I	GGWCC	1 cut(s)	503
EcoRII	CCWGG	1 cut(s)	102
EcoT22I	ATGCAT	2 cut(s)	6, 72
FaeI	CATG	6 cut(s)	8, 51, 180, 376, 539, 697
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	6 cut(s)	4, 47, 176, 372, 535, 693
FblI	GTMKAC	2 cut(s)	181, 299
Fnu4HI	GCNGC	1 cut(s)	678
Fsp4HI	GCNGC	1 cut(s)	678
FspBI	CTAG	4 cut(s)	383, 566, 594, 712
GluI	GCNGC	1 cut(s)	678
HgaI	GACGC	1 cut(s)	383
Hin1II	CATG	6 cut(s)	8, 51, 180, 376, 539, 697
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	3 cut(s)	80, 296, 379
HphI	GGTGA	1 cut(s)	186
Hpy166II	GTNNAC	3 cut(s)	182, 300, 503
Hpy188I	TCNGA	6 cut(s)	169, 211, 243, 271, 295, 412
Hpy188III	TCNNGA	2 cut(s)	260, 561
Hpy8I	GTNNAC	3 cut(s)	182, 300, 503
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	58, 341
HpyCH4IV	ACGT	2 cut(s)	28, 253
HpyCH4V	TGCA	6 cut(s)	4, 38, 70, 541, 553, 677
HpyF10VI	GCNNNNNNNGC	2 cut(s)	442, 599
HpyF3I	CTNAG	3 cut(s)	89, 240, 441
HpySE526I	ACGT	2 cut(s)	28, 253
Hsp92II	CATG	6 cut(s)	8, 51, 180, 376, 539, 697
Kzo9I	GATC	3 cut(s)	7, 211, 262
LpnPI	CCDG	8 cut(s)	24, 89, 116, 221, 229, 354, 519, 527
Lsp1109I	GCAGC	1 cut(s)	689
LweI	GCATC	2 cut(s)	94, 256
MaeI	CTAG	4 cut(s)	383, 566, 594, 712
MaeII	ACGT	2 cut(s)	28, 253
MaeIII	GTNAC	2 cut(s)	531, 696
MalI	GATC	3 cut(s)	9, 213, 264
MboI	GATC	3 cut(s)	7, 211, 262
MboII	GAAGA	4 cut(s)	411, 440, 642, 645
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	6 cut(s)	43, 73, 388, 406, 479, 672
MlyI	GAGTC	2 cut(s)	74, 305
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	8 cut(s)	55, 151, 369, 447, 450, 566, 615, 714
Mph1103I	ATGCAT	2 cut(s)	6, 72
MseI	TTAA	3 cut(s)	387, 608, 642
MslI	CAYNNNNRTG	3 cut(s)	75, 342, 371
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	442, 599
NdeII	GATC	3 cut(s)	7, 211, 262
NlaIII	CATG	6 cut(s)	8, 51, 180, 376, 539, 697
NsiI	ATGCAT	2 cut(s)	6, 72
NspI	RCATGY	3 cut(s)	180, 539, 697
OliI	CACNNNNGTG	1 cut(s)	342
PciI	ACATGT	3 cut(s)	176, 535, 693
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	679
PleI	GAGTC	2 cut(s)	74, 304
PpsI	GAGTC	2 cut(s)	74, 304
PscI	ACATGT	3 cut(s)	176, 535, 693
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	211
RseI	CAYNNNNRTG	3 cut(s)	75, 342, 371
SalI	GTCGAC	1 cut(s)	298
SaqAI	TTAA	3 cut(s)	387, 608, 642
SatI	GCNGC	1 cut(s)	678
Sau3AI	GATC	3 cut(s)	7, 211, 262
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	2 cut(s)	74, 305
ScrFI	CCNGG	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	94, 256
SfcI	CTRYAG	2 cut(s)	54, 182
SinI	GGWCC	1 cut(s)	503
SmiMI	CAYNNNNRTG	3 cut(s)	75, 342, 371
SmlI	CTYRAG	1 cut(s)	559
SmoI	CTYRAG	1 cut(s)	559
Sse9I	AATT	6 cut(s)	43, 73, 388, 406, 479, 672
SspMI	CTAG	4 cut(s)	383, 566, 594, 712
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	58, 341
TaiI	ACGT	2 cut(s)	31, 256
TaqI	TCGA	4 cut(s)	299, 451, 585, 656
TasI	AATT	6 cut(s)	43, 73, 388, 406, 479, 672
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	387, 608, 642
Tru9I	TTAA	3 cut(s)	387, 608, 642
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	1 cut(s)	677
TspDTI	ATGAA	2 cut(s)	36, 411
TspRI	CASTG	1 cut(s)	63
VpaK11BI	GGWCC	1 cut(s)	503
XapI	RAATTY	3 cut(s)	43, 406, 479
XceI	RCATGY	3 cut(s)	180, 539, 697
XmiI	GTMKAC	2 cut(s)	181, 299
XspI	CTAG	4 cut(s)	383, 566, 594, 712
Zsp2I	ATGCAT	2 cut(s)	6, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.