Rh7CG331200

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005760
Physical Location & Seq
Reverse (-)
36585329 .. 36592125
6797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG331200.1

Sequence Viewer

Length: 525 bp
ATGGCGACGAATCTGAGCCGTCAATTCTCATCAACGATCGTAATGAAAGCCGAGCCTCTGGCTTGCTCAACTGTCAACTCAGTGAGCCGGCTCTTGTCCTCCTCGACCGGGCAATCTCAACCGGAGCGCGAAAACGCGGAGGTGAAATACGACGGAAGCGCCAAACCGGACGACGGAAAGAGTGAAAAGCCAACTGAGGATGGTGAAGATGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGCCGAAAGGGCCCGAGCCGACCCGGTACGGCGATTGGGAAAAAAACGGGATAAAACAACCACAGATGTTTAGGCTGTTCCTCGGGGAAGCACGGCTTTTTCCACTTTCTGGTGAAAGAGGAAGTAGTACTTCATCATCTGTTAGTCGTGATCATGGGAATGGTGCAGAGTTGCAGCACAAGATTTTCTATGAAGAATTTGTTATCAAGGCTTTCTACGAGGCTGAGAAAGCACACAGAGGGCAGCATTGTATTGAAATGGCAGTGTGCTCGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

174

Amino Acids

19.17

Weight (kDa)

5.3

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 70 - 100 2.6e-13 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 356
AccII CGCG 2 cut(s) 129, 137
AciI CCGC 2 cut(s) 137, 246
AcsI RAATTY 1 cut(s) 443
AfaI GTAC 2 cut(s) 275, 376
AfiI CCNNNNNNNGG 3 cut(s) 108, 173, 356
AgsI TTSAA 2 cut(s) 223, 503
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 2 cut(s) 260, 329
AoxI GGCC 2 cut(s) 248, 257
ApaI GGGCCC 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 421, 490
ApoI RAATTY 1 cut(s) 443
AspLEI GCGC 2 cut(s) 129, 161
AspS9I GGNCC 3 cut(s) 248, 257, 258
AsuC2I CCSGG 2 cut(s) 109, 271
AsuHPI GGTGA 4 cut(s) 154, 215, 248, 371
AvaI CYCGRG 2 cut(s) 260, 329
BaeGI GKGCMC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 433, 502
BccI CCATC 1 cut(s) 194
BceAI ACGGC 3 cut(s) 3, 292, 356
BcgI CGANNNNNNTGC 1 cut(s) 498
BclI TGATCA 1 cut(s) 397
BcnI CCSGG 2 cut(s) 109, 271
BcoDI GTCTC 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 256
BisI GCNGC 2 cut(s) 422, 491
BlsI GCNGC 2 cut(s) 423, 492
BmcAI AGTACT 1 cut(s) 376
Bme1390I CCNGG 2 cut(s) 109, 271
BmeT110I CYCGRG 2 cut(s) 260, 329
BmgT120I GGNCC 3 cut(s) 248, 257, 258
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 109, 271
BpuMI CCSGG 2 cut(s) 109, 271
BsaJI CCNNGG 1 cut(s) 328
BsaWI WCCGGW 2 cut(s) 121, 166
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 173, 356
Bse118I RCCGGY 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 205
BseLI CCNNNNNNNGG 3 cut(s) 108, 173, 356
BseMII CTCAG 4 cut(s) 5, 93, 186, 462
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 261
BseXI GCAGC 2 cut(s) 433, 502
BsgI GTGCAG 1 cut(s) 432
Bsh1236I CGCG 2 cut(s) 129, 137
Bsh1285I CGRYCG 2 cut(s) 39, 108
BshFI GGCC 2 cut(s) 250, 259
BsiEI CGRYCG 2 cut(s) 39, 108
BsiHKAI GWGCWC 1 cut(s) 518
BsiHKCI CYCGRG 2 cut(s) 260, 329
BsiSI CCGG 5 cut(s) 88, 108, 122, 167, 271
BslI CCNNNNNNNGG 3 cut(s) 108, 173, 356
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 2 cut(s) 250, 259
BsoBI CYCGRG 2 cut(s) 260, 329
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 261, 518
Bsp143I GATC 3 cut(s) 36, 240, 397
BspACI CCGC 2 cut(s) 137, 246
BspANI GGCC 2 cut(s) 250, 259
BspCNI CTCAG 4 cut(s) 6, 92, 187, 463
BspFNI CGCG 2 cut(s) 129, 137
BspLI GGNNCC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 3 cut(s) 36, 240, 397
Bst4CI ACNGT 1 cut(s) 73
BstC8I GCNNGC 4 cut(s) 64, 89, 248, 518
BstDEI CTNAG 4 cut(s) 14, 79, 195, 471
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 2 cut(s) 129, 137
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 129, 161
BstKTI GATC 3 cut(s) 39, 243, 400
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 36, 240, 397
BstMCI CGRYCG 2 cut(s) 39, 108
BstMWI GCNNNNNNNGC 2 cut(s) 256, 476
BstSCI CCNGG 2 cut(s) 107, 269
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 2 cut(s) 129, 137
BstV1I GCAGC 2 cut(s) 433, 502
BsuRI GGCC 2 cut(s) 250, 259
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 2 cut(s) 87, 516
Cac8I GCNNGC 4 cut(s) 64, 89, 248, 518
CfoI GCGC 2 cut(s) 129, 161
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 248, 257, 258
Csp6I GTAC 2 cut(s) 274, 375
CviAII CATG 1 cut(s) 401
CviQI GTAC 2 cut(s) 274, 375
DdeI CTNAG 4 cut(s) 14, 79, 195, 471
DpnI GATC 3 cut(s) 38, 242, 399
DpnII GATC 3 cut(s) 36, 240, 397
Eco24I GRGCYC 1 cut(s) 261
Eco88I CYCGRG 2 cut(s) 260, 329
EcoO109I RGGNCCY 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 1 cut(s) 404
FaiI YATR 2 cut(s) 402, 438
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 361, 393
FatI CATG 1 cut(s) 400
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 422, 491
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 261
Fsp4HI GCNGC 2 cut(s) 422, 491
GlaI GCGC 2 cut(s) 128, 160
GluI GCNGC 2 cut(s) 422, 491
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 250, 259
HapII CCGG 5 cut(s) 88, 108, 122, 167, 271
HhaI GCGC 2 cut(s) 129, 161
Hin1II CATG 1 cut(s) 404
Hin6I GCGC 2 cut(s) 127, 159
HinP1I GCGC 2 cut(s) 127, 159
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 10
HpaII CCGG 5 cut(s) 88, 108, 122, 167, 271
HphI GGTGA 4 cut(s) 154, 215, 248, 371
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 3 cut(s) 10, 155, 176
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 2 cut(s) 413, 421
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 476
HpyF3I CTNAG 4 cut(s) 14, 79, 195, 471
Hsp92II CATG 1 cut(s) 404
HspAI GCGC 2 cut(s) 127, 159
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Ksp22I TGATCA 1 cut(s) 397
Kzo9I GATC 3 cut(s) 36, 240, 397
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 7 cut(s) 44, 101, 121, 135, 180, 284, 342
Lsp1109I GCAGC 2 cut(s) 433, 502
MalI GATC 3 cut(s) 38, 242, 399
MboI GATC 3 cut(s) 36, 240, 397
MboII GAAGA 2 cut(s) 218, 452
MhlI GDGCHC 2 cut(s) 261, 518
MluCI AATT 2 cut(s) 23, 443
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 9 cut(s) 66, 109, 112, 133, 190, 338, 359, 460, 479
MroNI GCCGGC 1 cut(s) 87
MslI CAYNNNNRTG 1 cut(s) 405
MspI CCGG 5 cut(s) 88, 108, 122, 167, 271
MspR9I CCNGG 2 cut(s) 109, 271
MvnI CGCG 2 cut(s) 129, 137
MwoI GCNNNNNNNGC 2 cut(s) 256, 476
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 109, 271
NdeII GATC 3 cut(s) 36, 240, 397
NgoMIV GCCGGC 1 cut(s) 87
NlaIII CATG 1 cut(s) 404
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 76
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 2 cut(s) 423, 492
Ple19I CGATCG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 259
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 3 cut(s) 248, 257, 258
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 2 cut(s) 275, 376
RsaNI GTAC 2 cut(s) 274, 375
RseI CAYNNNNRTG 1 cut(s) 405
SatI GCNGC 2 cut(s) 422, 491
Sau3AI GATC 3 cut(s) 36, 240, 397
Sau96I GGNCC 3 cut(s) 248, 257, 258
ScaI AGTACT 1 cut(s) 376
ScrFI CCNGG 2 cut(s) 109, 271
SduI GDGCHC 2 cut(s) 261, 518
SetI ASST 1 cut(s) 144
SfiI GGCCNNNNNGGCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 405
Sse9I AATT 2 cut(s) 23, 443
SsiI CCGC 2 cut(s) 137, 246
StyD4I CCNGG 2 cut(s) 107, 269
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 23, 443
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 2 cut(s) 87, 516
TseI GCWGC 2 cut(s) 421, 490
TspDTI ATGAA 3 cut(s) 59, 369, 453
TspGWI ACGGA 2 cut(s) 168, 189
TspRI CASTG 2 cut(s) 87, 516
Van91I CCANNNNNTGG 1 cut(s) 356
XapI RAATTY 1 cut(s) 443
ZrmI AGTACT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.