Rh1AG450300

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005760
Physical Location & Seq
Forward (+)
66949738 .. 66950441
704 bp
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UTR
Exon/CDS
Intron
Rh1AG450300.1

Sequence Viewer

Length: 315 bp
ATGGCGACGAATCTGAGCCGTCGATTCTCATCAACGATCGTAACGAAAGCCGAGCCTCTGGCTCGCTCAGCTGTCAACTCAGTGAGCCGGCTCTTGTCCTCCTCGACCGGGCAATCTCAACCGGAGCGCGAAAACGCGGAGGTGAAATACGACGGAAGCGCCAAACCGGACGACGGAAAGAGTGAAAAGCCAACTGAGGATGGTGAAGATGAGTTGGACTTGAATAAAGAGACGGGTGAGATCGGCGGGCCGAAAGGGCCCGAGCCGACCCGGTACGGCGATTGGGAAAAAAACGGTCGGTGCTCTGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

104

Amino Acids

11.29

Weight (kDa)

4.8

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 70 - 104 8.7e-19 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 129, 137
AciI CCGC 2 cut(s) 137, 246
AfaI GTAC 1 cut(s) 275
AfiI CCNNNNNNNGG 2 cut(s) 108, 173
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 2 cut(s) 248, 257
ApaI GGGCCC 1 cut(s) 261
AspLEI GCGC 2 cut(s) 129, 161
AspS9I GGNCC 3 cut(s) 248, 257, 258
AsuC2I CCSGG 2 cut(s) 109, 271
AsuHPI GGTGA 3 cut(s) 154, 215, 248
AvaI CYCGRG 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 305
BccI CCATC 1 cut(s) 194
BceAI ACGGC 2 cut(s) 3, 292
BcnI CCSGG 2 cut(s) 109, 271
BcoDI GTCTC 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 256
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 109, 271
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 3 cut(s) 248, 257, 258
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 109, 271
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 2 cut(s) 109, 271
BsaBI GATNNNNATC 1 cut(s) 28
BsaWI WCCGGW 2 cut(s) 121, 166
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 173
Bse118I RCCGGY 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 28
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 28
BseLI CCNNNNNNNGG 2 cut(s) 108, 173
BseMII CTCAG 4 cut(s) 5, 81, 93, 186
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 261
Bsh1236I CGCG 2 cut(s) 129, 137
Bsh1285I CGRYCG 3 cut(s) 39, 108, 298
BshFI GGCC 2 cut(s) 250, 259
BsiEI CGRYCG 3 cut(s) 39, 108, 298
BsiHKAI GWGCWC 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 5 cut(s) 88, 108, 122, 167, 271
BslI CCNNNNNNNGG 2 cut(s) 108, 173
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsnI GGCC 2 cut(s) 250, 259
BsoBI CYCGRG 1 cut(s) 260
Bsp120I GGGCCC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 261, 305
Bsp143I GATC 2 cut(s) 36, 240
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 2 cut(s) 137, 246
BspANI GGCC 2 cut(s) 250, 259
BspCNI CTCAG 4 cut(s) 6, 80, 92, 187
BspFNI CGCG 2 cut(s) 129, 137
BspLI GGNNCC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 87
BssAI RCCGGY 1 cut(s) 87
BssMI GATC 2 cut(s) 36, 240
Bst4CI ACNGT 1 cut(s) 296
BstC8I GCNNGC 3 cut(s) 64, 89, 248
BstDEI CTNAG 4 cut(s) 14, 67, 79, 195
BstF5I GGATG 1 cut(s) 205
BstFNI CGCG 2 cut(s) 129, 137
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 129, 161
BstKTI GATC 2 cut(s) 39, 243
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 2 cut(s) 36, 240
BstMCI CGRYCG 3 cut(s) 39, 108, 298
BstMWI GCNNNNNNNGC 2 cut(s) 68, 256
BstSCI CCNGG 2 cut(s) 107, 269
BstSLI GKGCMC 1 cut(s) 261
BstUI CGCG 2 cut(s) 129, 137
BsuRI GGCC 2 cut(s) 250, 259
BtsCI GGATG 1 cut(s) 205
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 3 cut(s) 64, 89, 248
CfoI GCGC 2 cut(s) 129, 161
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 3 cut(s) 248, 257, 258
Csp6I GTAC 1 cut(s) 274
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 4 cut(s) 14, 67, 79, 195
DpnI GATC 2 cut(s) 38, 242
DpnII GATC 2 cut(s) 36, 240
Eco24I GRGCYC 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 261
Esp3I CGTCTC 1 cut(s) 224
FauI CCCGC 1 cut(s) 239
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 1 cut(s) 261
GlaI GCGC 2 cut(s) 128, 160
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 250, 259
HapII CCGG 5 cut(s) 88, 108, 122, 167, 271
HhaI GCGC 2 cut(s) 129, 161
Hin6I GCGC 2 cut(s) 127, 159
HinP1I GCGC 2 cut(s) 127, 159
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 10, 24
HpaII CCGG 5 cut(s) 88, 108, 122, 167, 271
HphI GGTGA 3 cut(s) 154, 215, 248
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 15, 307
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 4 cut(s) 10, 24, 155, 176
HpyCH4III ACNGT 1 cut(s) 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 256
HpyF3I CTNAG 4 cut(s) 14, 67, 79, 195
HspAI GCGC 2 cut(s) 127, 159
KroI GCCGGC 1 cut(s) 87
KroNI GCCGGC 1 cut(s) 89
Kzo9I GATC 2 cut(s) 36, 240
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 6 cut(s) 44, 101, 121, 135, 180, 284
MaeIII GTNAC 1 cut(s) 40
MalI GATC 2 cut(s) 38, 242
MboI GATC 2 cut(s) 36, 240
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 2 cut(s) 261, 305
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 5 cut(s) 66, 109, 112, 133, 190
MroNI GCCGGC 1 cut(s) 87
MseI TTAA 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 5 cut(s) 88, 108, 122, 167, 271
MspR9I CCNGG 2 cut(s) 109, 271
MvnI CGCG 2 cut(s) 129, 137
MwoI GCNNNNNNNGC 2 cut(s) 68, 256
NaeI GCCGGC 1 cut(s) 89
NciI CCSGG 2 cut(s) 109, 271
NdeII GATC 2 cut(s) 36, 240
NgoMIV GCCGGC 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 259
NmeAIII GCCGAG 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 10, 24
Ple19I CGATCG 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 259
PspOMI GGGCCC 1 cut(s) 257
PspPI GGNCC 3 cut(s) 248, 257, 258
PvuI CGATCG 1 cut(s) 39
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 313
Sau3AI GATC 2 cut(s) 36, 240
Sau96I GGNCC 3 cut(s) 248, 257, 258
ScrFI CCNGG 2 cut(s) 109, 271
SduI GDGCHC 2 cut(s) 261, 305
SetI ASST 2 cut(s) 73, 144
SfiI GGCCNNNNNGGCC 1 cut(s) 256
SsiI CCGC 2 cut(s) 137, 246
StyD4I CCNGG 2 cut(s) 107, 269
TaaI ACNGT 1 cut(s) 296
TaqI TCGA 2 cut(s) 22, 104
TfiI GAWTC 2 cut(s) 10, 24
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 87
TspGWI ACGGA 2 cut(s) 168, 189
TspRI CASTG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.