Rw7G035620

UPF0369 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005760
Physical Location & Seq
Reverse (-)
53386871 .. 53387188
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G035620.1

Sequence Viewer

Length: 318 bp
ATGGCGACGAATCTGAGCCGTCTGTTCTCATCAGCAACGATGACGAAAGCCGAGCCTCTGACTCGCTCAGCTACCAACTCAGTGAGTCGGCTCTTGCCCTCCTTGACTCGGCAGTCTCAACTGGAGAGCGAAAACGCCCAGGTAAAATACGTCGGAAGCGCCGAACTTGACGACGAAAAGAGTGAAAAGCGAGATGAGGGTGGTGAAGGTGACAGAGAAAAGTTGGATTTGAATAAAGAGACGGGTGGGATCGGCGGGCCGAAAGGGCCTGAGCTGACCCGGTTTGGAGATTGGGAAAAAAAACGGTCGGTGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1674

Protein Analysis

105

Amino Acids

11.51

Weight (kDa)

5.57

Isoelectric Point (pI)

47.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1674 PF07896 62 - 101 1.2e-07 Protein of unknown function (DUF1674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AciI CCGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 108
AgsI TTSAA 1 cut(s) 232
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 2 cut(s) 71, 274
AluI AGCT 2 cut(s) 71, 274
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 120, 233
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 257, 266
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 257, 266
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 215, 221
Bbv12I GWGCWC 1 cut(s) 315
BceAI ACGGC 1 cut(s) 3
BciT130I CCWGG 1 cut(s) 140
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 120, 233
BfoI RGCGCY 1 cut(s) 162
BglI GCCNNNNNGGC 1 cut(s) 265
BlpI GCTNAGC 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 140, 280
BmgT120I GGNCC 2 cut(s) 257, 266
BmrFI CCNGG 2 cut(s) 140, 280
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 138
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMII CTCAG 4 cut(s) 5, 81, 93, 261
BseNI ACTGG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 2 cut(s) 259, 268
BsiEI CGRYCG 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 2 cut(s) 120, 233
BsmBI CGTCTC 1 cut(s) 233
BsnI GGCC 2 cut(s) 259, 268
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 1 cut(s) 255
BspANI GGCC 2 cut(s) 259, 268
BspCNI CTCAG 4 cut(s) 6, 80, 92, 262
BspPI GGATC 1 cut(s) 257
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 257
BstDEI CTNAG 4 cut(s) 14, 67, 79, 270
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 1 cut(s) 252
BstMAI GTCTC 2 cut(s) 120, 233
BstMBI GATC 1 cut(s) 249
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 2 cut(s) 138, 278
BsuRI GGCC 2 cut(s) 259, 268
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 257
CfoI GCGC 1 cut(s) 161
Cfr13I GGNCC 2 cut(s) 257, 266
CviJI RGCY 8 cut(s) 18, 50, 55, 71, 91, 259, 268, 274
CviKI_1 RGCY 8 cut(s) 18, 50, 55, 71, 91, 259, 268, 274
DdeI CTNAG 4 cut(s) 14, 67, 79, 270
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
EcoO109I RGGNCCY 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 138
Esp3I CGTCTC 1 cut(s) 233
FauI CCCGC 1 cut(s) 248
GlaI GCGC 1 cut(s) 160
GsuI CTGGAG 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 2 cut(s) 259, 268
HapII CCGG 1 cut(s) 280
HhaI GCGC 1 cut(s) 161
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HinfI GANTC 4 cut(s) 10, 61, 85, 106
HpaII CCGG 1 cut(s) 280
HphI GGTGA 2 cut(s) 215, 221
Hpy188I TCNGA 4 cut(s) 15, 60, 155, 317
Hpy99I CGWCG 3 cut(s) 10, 155, 176
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 4 cut(s) 14, 67, 79, 270
HpySE526I ACGT 1 cut(s) 150
HspAI GCGC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 5 cut(s) 107, 125, 152, 282, 293
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 209
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 315
MlyI GAGTC 3 cut(s) 55, 94, 100
MmeI TCCRAC 2 cut(s) 133, 204
MnlI CCTC 3 cut(s) 66, 109, 190
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 2 cut(s) 140, 280
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 265
NciI CCSGG 1 cut(s) 280
NdeII GATC 1 cut(s) 249
NmeAIII GCCGAG 2 cut(s) 76, 88
NmuCI GTSAC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 3 cut(s) 55, 93, 100
PpsI GAGTC 3 cut(s) 55, 93, 100
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PspPI GGNCC 2 cut(s) 257, 266
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 2 cut(s) 257, 266
SchI GAGTC 3 cut(s) 55, 94, 100
ScrFI CCNGG 2 cut(s) 140, 280
SduI GDGCHC 1 cut(s) 315
SetI ASST 5 cut(s) 73, 144, 153, 211, 276
SfiI GGCCNNNNNGGCC 1 cut(s) 265
SsiI CCGC 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 138, 278
TaaI ACNGT 1 cut(s) 306
TaiI ACGT 1 cut(s) 153
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 87
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspRI CASTG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.