methyl-CpG-binding domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01460 |
| fragaria_vesca | FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 |
| malus_domestica | MD09G1035200.v1.1 MD17G1035500.v1.1 |
| prunus_persica | Prupe.3G283100_v2.0.a1 |
| pyrus_communis | pycom111g02810 pycom17g03270 |
| rosa_chinensis | RchiOBHm_Chr2g0171081 |
| rosa_laevigata | RLG00000022001 |
| rosa_multiflora | Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080830 |
| rosa_rugosa | Rorug02G0553500 Rorug02G0553600 |
| rosa_samantha | Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100 |
| rosa_wichuraiana | Rw2G051900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1826, 3252 |
| AarI | CACCTGC | 2 cut(s) | 302, 4837 |
| AatII | GACGTC | 2 cut(s) | 138, 444 |
| Acc36I | ACCTGC | 3 cut(s) | 302, 4416, 4837 |
| AccB1I | GGYRCC | 2 cut(s) | 518, 2024 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1421 |
| AccI | GTMKAC | 3 cut(s) | 444, 2984, 4920 |
| AccII | CGCG | 5 cut(s) | 207, 246, 279, 465, 2877 |
| AcoI | YGGCCR | 5 cut(s) | 48, 247, 383, 2798, 3513 |
| AcuI | CTGAAG | 8 cut(s) | 3523, 4359, 4388, 4566, 4773, 4980, 6324, 6629 |
| AcvI | CACGTG | 1 cut(s) | 253 |
| AcyI | GRCGYC | 3 cut(s) | 39, 135, 441 |
| AfeI | AGCGCT | 1 cut(s) | 380 |
| AflII | CTTAAG | 2 cut(s) | 3763, 4163 |
| AflIII | ACRYGT | 1 cut(s) | 4821 |
| AgeI | ACCGGT | 1 cut(s) | 4586 |
| AhlI | ACTAGT | 2 cut(s) | 2359, 2456 |
| Alw21I | GWGCWC | 9 cut(s) | 78, 865, 1053, 2643, 2925, 4480, 5200, 5361, 6009 |
| Alw44I | GTGCAC | 2 cut(s) | 5196, 6005 |
| AlwNI | CAGNNNCTG | 7 cut(s) | 412, 1889, 2501, 3121, 3746, 6026, 6479 |
| Ama87I | CYCGRG | 3 cut(s) | 236, 4479, 4642 |
| Aor51HI | AGCGCT | 1 cut(s) | 380 |
| ApaLI | GTGCAC | 2 cut(s) | 5196, 6005 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3535, 3567 |
| AseI | ATTAAT | 2 cut(s) | 2784, 3360 |
| AsiGI | ACCGGT | 1 cut(s) | 4586 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1363, 1717, 3594, 4969, 6393 |
| AspLEI | GCGC | 4 cut(s) | 279, 299, 381, 465 |
| AsuC2I | CCSGG | 5 cut(s) | 174, 195, 486, 730, 6091 |
| AsuII | TTCGAA | 1 cut(s) | 3693 |
| AsuNHI | GCTAGC | 1 cut(s) | 3298 |
| AvaI | CYCGRG | 3 cut(s) | 236, 4479, 4642 |
| AvaII | GGWCC | 8 cut(s) | 179, 1340, 1963, 2169, 3269, 5453, 6017, 6208 |
| AxyI | CCTNAGG | 3 cut(s) | 1544, 6163, 6440 |
| BaeGI | GKGCMC | 6 cut(s) | 362, 523, 2029, 3115, 5200, 6009 |
| BalI | TGGCCA | 1 cut(s) | 2800 |
| BamHI | GGATCC | 4 cut(s) | 2680, 3196, 3569, 3948 |
| BanI | GGYRCC | 2 cut(s) | 518, 2024 |
| BanII | GRGCYC | 4 cut(s) | 63, 1053, 5361, 6591 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 1063, 1095, 3309, 3341, 6160, 6192 |
| BbrPI | CACGTG | 1 cut(s) | 253 |
| BbsI | GAAGAC | 4 cut(s) | 881, 1692, 4353, 6210 |
| Bbv12I | GWGCWC | 9 cut(s) | 78, 865, 1053, 2643, 2925, 4480, 5200, 5361, 6009 |
| BceAI | ACGGC | 4 cut(s) | 283, 305, 4026, 5116 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3291, 3325, 6391, 6425 |
| BciVI | GTATCC | 1 cut(s) | 4793 |
| BclI | TGATCA | 1 cut(s) | 2209 |
| BcnI | CCSGG | 5 cut(s) | 174, 195, 486, 730, 6091 |
| BcuI | ACTAGT | 2 cut(s) | 2359, 2456 |
| BfmI | CTRYAG | 8 cut(s) | 582, 1260, 1267, 1701, 3423, 4269, 4536, 6076 |
| BfoI | RGCGCY | 1 cut(s) | 382 |
| BfrI | CTTAAG | 2 cut(s) | 3763, 4163 |
| BfuAI | ACCTGC | 3 cut(s) | 302, 4416, 4837 |
| BfuI | GTATCC | 1 cut(s) | 4793 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 47 |
| BglII | AGATCT | 3 cut(s) | 4302, 5850, 6252 |
| BlpI | GCTNAGC | 1 cut(s) | 2565 |
| Bme18I | GGWCC | 8 cut(s) | 179, 1340, 1963, 2169, 3269, 5453, 6017, 6208 |
| BmeT110I | CYCGRG | 3 cut(s) | 236, 4479, 4642 |
| BmrI | ACTGGG | 5 cut(s) | 372, 518, 1305, 4999, 6208 |
| BmtI | GCTAGC | 1 cut(s) | 3302 |
| BmuI | ACTGGG | 5 cut(s) | 372, 518, 1305, 4999, 6208 |
| BpiI | GAAGAC | 4 cut(s) | 881, 1692, 4353, 6210 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 664, 696, 2236, 2268, 2318, 2350 |
| BpmI | CTGGAG | 6 cut(s) | 2559, 2718, 2961, 5459, 5639, 6434 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2565 |
| Bpu14I | TTCGAA | 1 cut(s) | 3693 |
| BpuMI | CCSGG | 5 cut(s) | 174, 195, 486, 730, 6091 |
| Bsa29I | ATCGAT | 2 cut(s) | 84, 3789 |
| BsaAI | YACGTR | 1 cut(s) | 253 |
| BsaBI | GATNNNNATC | 1 cut(s) | 3195 |
| BsaHI | GRCGYC | 3 cut(s) | 39, 135, 441 |
| BsaI | GGTCTC | 4 cut(s) | 969, 5061, 6151, 6310 |
| BsaWI | WCCGGW | 3 cut(s) | 1174, 2749, 4586 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 724, 754, 1238, 1268, 5432, 5462, 5811, 5841 |
| Bse118I | RCCGGY | 4 cut(s) | 46, 185, 3511, 4586 |
| Bse21I | CCTNAGG | 3 cut(s) | 1544, 6163, 6440 |
| Bse3DI | GCAATG | 3 cut(s) | 1376, 3265, 5575 |
| Bse8I | GATNNNNATC | 1 cut(s) | 3195 |
| BseCI | ATCGAT | 2 cut(s) | 84, 3789 |
| BseJI | GATNNNNATC | 1 cut(s) | 3195 |
| BseMI | GCAATG | 3 cut(s) | 1376, 3265, 5575 |
| BseRI | GAGGAG | 8 cut(s) | 362, 470, 1561, 2211, 2366, 3056, 3927, 4813 |
| BseSI | GKGCMC | 6 cut(s) | 362, 523, 2029, 3115, 5200, 6009 |
| BseX3I | CGGCCG | 1 cut(s) | 48 |
| BseYI | CCCAGC | 4 cut(s) | 2501, 2948, 3454, 6590 |
| BsgI | GTGCAG | 4 cut(s) | 1146, 1199, 5057, 5758 |
| Bsh1236I | CGCG | 5 cut(s) | 207, 246, 279, 465, 2877 |
| Bsh1285I | CGRYCG | 1 cut(s) | 51 |
| BshNI | GGYRCC | 2 cut(s) | 518, 2024 |
| BshTI | ACCGGT | 1 cut(s) | 4586 |
| BshVI | ATCGAT | 2 cut(s) | 84, 3789 |
| BsiEI | CGRYCG | 1 cut(s) | 51 |
| BsiHKAI | GWGCWC | 9 cut(s) | 78, 865, 1053, 2643, 2925, 4480, 5200, 5361, 6009 |
| BsiHKCI | CYCGRG | 3 cut(s) | 236, 4479, 4642 |
| BsiWI | CGTACG | 3 cut(s) | 139, 4945, 6356 |
| BslFI | GGGAC | 4 cut(s) | 1182, 3957, 5924, 6194 |
| BsmBI | CGTCTC | 2 cut(s) | 30, 3668 |
| BsmFI | GGGAC | 4 cut(s) | 1182, 3957, 5924, 6194 |
| BsmI | GAATGC | 3 cut(s) | 309, 3764, 5779 |
| Bso31I | GGTCTC | 4 cut(s) | 969, 5061, 6151, 6310 |
| BsoBI | CYCGRG | 3 cut(s) | 236, 4479, 4642 |
| Bsp119I | TTCGAA | 1 cut(s) | 3693 |
| Bsp1407I | TGTACA | 1 cut(s) | 5532 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2565 |
| Bsp19I | CCATGG | 2 cut(s) | 2838, 3516 |
| Bsp68I | TCGCGA | 1 cut(s) | 2877 |
| BspDI | ATCGAT | 2 cut(s) | 84, 3789 |
| BspFNI | CGCG | 5 cut(s) | 207, 246, 279, 465, 2877 |
| BspHI | TCATGA | 1 cut(s) | 1237 |
| BspMAI | CTGCAG | 4 cut(s) | 586, 1705, 3427, 4273 |
| BspMI | ACCTGC | 3 cut(s) | 302, 4416, 4837 |
| BspOI | GCTAGC | 1 cut(s) | 3302 |
| BspT104I | TTCGAA | 1 cut(s) | 3693 |
| BspT107I | GGYRCC | 2 cut(s) | 518, 2024 |
| BspTI | CTTAAG | 2 cut(s) | 3763, 4163 |
| BspTNI | GGTCTC | 4 cut(s) | 969, 5061, 6151, 6310 |
| BsrDI | GCAATG | 3 cut(s) | 1376, 3265, 5575 |
| BsrFI | RCCGGY | 4 cut(s) | 46, 185, 3511, 4586 |
| BsrGI | TGTACA | 1 cut(s) | 5532 |
| BssAI | RCCGGY | 4 cut(s) | 46, 185, 3511, 4586 |
| BssNI | GRCGYC | 3 cut(s) | 39, 135, 441 |
| BssT1I | CCWWGG | 9 cut(s) | 2369, 2416, 2661, 2838, 3516, 3830, 4717, 5201, 5268 |
| Bst6I | CTCTTC | 7 cut(s) | 1060, 3033, 4110, 4293, 5727, 5841, 6149 |
| BstACI | GRCGYC | 3 cut(s) | 39, 135, 441 |
| BstAFI | CTTAAG | 2 cut(s) | 3763, 4163 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 3746, 4255, 4319 |
| BstAUI | TGTACA | 1 cut(s) | 5532 |
| BstBAI | YACGTR | 1 cut(s) | 253 |
| BstBI | TTCGAA | 1 cut(s) | 3693 |
| BstDSI | CCRYGG | 2 cut(s) | 2838, 3516 |
| BstEII | GGTNACC | 1 cut(s) | 2846 |
| BstFNI | CGCG | 5 cut(s) | 207, 246, 279, 465, 2877 |
| BstH2I | RGCGCY | 1 cut(s) | 382 |
| BstHHI | GCGC | 4 cut(s) | 279, 299, 381, 465 |
| BstMCI | CGRYCG | 1 cut(s) | 51 |
| BstNSI | RCATGY | 5 cut(s) | 812, 1793, 2519, 4415, 4825 |
| BstPI | GGTNACC | 1 cut(s) | 2846 |
| BstSFI | CTRYAG | 8 cut(s) | 582, 1260, 1267, 1701, 3423, 4269, 4536, 6076 |
| BstSLI | GKGCMC | 6 cut(s) | 362, 523, 2029, 3115, 5200, 6009 |
| BstUI | CGCG | 5 cut(s) | 207, 246, 279, 465, 2877 |
| BstV2I | GAAGAC | 4 cut(s) | 881, 1692, 4353, 6210 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1033, 3207, 5437 |
| BstZI | CGGCCG | 1 cut(s) | 48 |
| Bsu15I | ATCGAT | 2 cut(s) | 84, 3789 |
| Bsu36I | CCTNAGG | 3 cut(s) | 1544, 6163, 6440 |
| BsuI | GTATCC | 1 cut(s) | 4793 |
| BsuTUI | ATCGAT | 2 cut(s) | 84, 3789 |
| BtgI | CCRYGG | 2 cut(s) | 2838, 3516 |
| BtgZI | GCGATG | 1 cut(s) | 2558 |
| BtsI | GCAGTG | 3 cut(s) | 2627, 5306, 6381 |
| BtuMI | TCGCGA | 1 cut(s) | 2877 |
| BveI | ACCTGC | 3 cut(s) | 302, 4416, 4837 |
| CaiI | CAGNNNCTG | 7 cut(s) | 412, 1889, 2501, 3121, 3746, 6026, 6479 |
| CciI | TCATGA | 1 cut(s) | 1237 |
| CfoI | GCGC | 4 cut(s) | 279, 299, 381, 465 |
| Cfr10I | RCCGGY | 4 cut(s) | 46, 185, 3511, 4586 |
| ClaI | ATCGAT | 2 cut(s) | 84, 3789 |
| CseI | GACGC | 3 cut(s) | 47, 699, 3398 |
| CspAI | ACCGGT | 1 cut(s) | 4586 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3838, 3873, 5097, 5132 |
| DraI | TTTAAA | 6 cut(s) | 820, 1756, 1774, 2433, 3930, 5712 |
| EaeI | YGGCCR | 5 cut(s) | 48, 247, 383, 2798, 3513 |
| EagI | CGGCCG | 1 cut(s) | 48 |
| Eam1104I | CTCTTC | 7 cut(s) | 1060, 3033, 4110, 4293, 5727, 5841, 6149 |
| EarI | CTCTTC | 7 cut(s) | 1060, 3033, 4110, 4293, 5727, 5841, 6149 |
| EciI | GGCGGA | 4 cut(s) | 156, 1503, 1931, 4253 |
| Ecl136II | GAGCTC | 2 cut(s) | 1051, 5359 |
| EclXI | CGGCCG | 1 cut(s) | 48 |
| Eco130I | CCWWGG | 9 cut(s) | 2369, 2416, 2661, 2838, 3516, 3830, 4717, 5201, 5268 |
| Eco147I | AGGCCT | 1 cut(s) | 1228 |
| Eco24I | GRGCYC | 4 cut(s) | 63, 1053, 5361, 6591 |
| Eco31I | GGTCTC | 4 cut(s) | 969, 5061, 6151, 6310 |
| Eco32I | GATATC | 1 cut(s) | 418 |
| Eco47I | GGWCC | 8 cut(s) | 179, 1340, 1963, 2169, 3269, 5453, 6017, 6208 |
| Eco47III | AGCGCT | 1 cut(s) | 380 |
| Eco52I | CGGCCG | 1 cut(s) | 48 |
| Eco53kI | GAGCTC | 2 cut(s) | 1051, 5359 |
| Eco57I | CTGAAG | 8 cut(s) | 3523, 4359, 4388, 4566, 4773, 4980, 6324, 6629 |
| Eco72I | CACGTG | 1 cut(s) | 253 |
| Eco81I | CCTNAGG | 3 cut(s) | 1544, 6163, 6440 |
| Eco88I | CYCGRG | 3 cut(s) | 236, 4479, 4642 |
| Eco91I | GGTNACC | 1 cut(s) | 2846 |
| EcoICRI | GAGCTC | 2 cut(s) | 1051, 5359 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3269, 6228 |
| EcoO65I | GGTNACC | 1 cut(s) | 2846 |
| EcoRI | GAATTC | 2 cut(s) | 4133, 4870 |
| EcoRV | GATATC | 1 cut(s) | 418 |
| EcoT14I | CCWWGG | 9 cut(s) | 2369, 2416, 2661, 2838, 3516, 3830, 4717, 5201, 5268 |
| EcoT22I | ATGCAT | 3 cut(s) | 2626, 3265, 4012 |
| EcoT38I | GRGCYC | 4 cut(s) | 63, 1053, 5361, 6591 |
| ErhI | CCWWGG | 9 cut(s) | 2369, 2416, 2661, 2838, 3516, 3830, 4717, 5201, 5268 |
| Esp3I | CGTCTC | 2 cut(s) | 30, 3668 |
| FaqI | GGGAC | 4 cut(s) | 1182, 3957, 5924, 6194 |
| FauI | CCCGC | 4 cut(s) | 114, 4079, 5487, 6064 |
| FauNDI | CATATG | 2 cut(s) | 1491, 5836 |
| FbaI | TGATCA | 1 cut(s) | 2209 |
| FblI | GTMKAC | 3 cut(s) | 444, 2984, 4920 |
| FriOI | GRGCYC | 4 cut(s) | 63, 1053, 5361, 6591 |
| FseI | GGCCGGCC | 1 cut(s) | 50 |
| GlaI | GCGC | 4 cut(s) | 278, 298, 380, 464 |
| GsaI | CCCAGC | 4 cut(s) | 2505, 2952, 3458, 6594 |
| GsuI | CTGGAG | 6 cut(s) | 2559, 2718, 2961, 5459, 5639, 6434 |
| HaeII | RGCGCY | 1 cut(s) | 382 |
| HgaI | GACGC | 3 cut(s) | 47, 699, 3398 |
| HhaI | GCGC | 4 cut(s) | 279, 299, 381, 465 |
| Hin1I | GRCGYC | 3 cut(s) | 39, 135, 441 |
| Hin6I | GCGC | 4 cut(s) | 277, 297, 379, 463 |
| HinP1I | GCGC | 4 cut(s) | 277, 297, 379, 463 |
| HincII | GTYRAC | 3 cut(s) | 445, 2365, 4208 |
| HindII | GTYRAC | 3 cut(s) | 445, 2365, 4208 |
| HindIII | AAGCTT | 8 cut(s) | 576, 652, 1077, 2427, 2567, 2765, 3591, 3734 |
| HpaI | GTTAAC | 1 cut(s) | 2365 |
| Hpy99I | CGWCG | 9 cut(s) | 29, 137, 140, 269, 446, 449, 3414, 4047, 5606 |
| Hsp92I | GRCGYC | 3 cut(s) | 39, 135, 441 |
| HspAI | GCGC | 4 cut(s) | 277, 297, 379, 463 |
| KroI | GCCGGC | 1 cut(s) | 46 |
| KroNI | GCCGGC | 1 cut(s) | 48 |
| Ksp22I | TGATCA | 1 cut(s) | 2209 |
| KspAI | GTTAAC | 1 cut(s) | 2365 |
| MfeI | CAATTG | 2 cut(s) | 835, 6405 |
| MlsI | TGGCCA | 1 cut(s) | 2800 |
| MluNI | TGGCCA | 1 cut(s) | 2800 |
| MlyI | GAGTC | 6 cut(s) | 742, 833, 2492, 2990, 5297, 6258 |
| MmeI | TCCRAC | 3 cut(s) | 3735, 5448, 6564 |
| Mox20I | TGGCCA | 1 cut(s) | 2800 |
| Mph1103I | ATGCAT | 3 cut(s) | 2626, 3265, 4012 |
| MroNI | GCCGGC | 1 cut(s) | 46 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1363, 1717, 3594, 4969, 6393 |
| MscI | TGGCCA | 1 cut(s) | 2800 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1490, 2304, 2528, 3205, 5631, 6012 |
| Msp20I | TGGCCA | 1 cut(s) | 2800 |
| MspA1I | CMGCKG | 4 cut(s) | 1586, 3566, 4196, 6476 |
| MspCI | CTTAAG | 2 cut(s) | 3763, 4163 |
| MunI | CAATTG | 2 cut(s) | 835, 6405 |
| Mva1269I | GAATGC | 3 cut(s) | 309, 3764, 5779 |
| MvnI | CGCG | 5 cut(s) | 207, 246, 279, 465, 2877 |
| NaeI | GCCGGC | 1 cut(s) | 48 |
| NciI | CCSGG | 5 cut(s) | 174, 195, 486, 730, 6091 |
| NcoI | CCATGG | 2 cut(s) | 2838, 3516 |
| NdeI | CATATG | 2 cut(s) | 1491, 5836 |
| NgoMIV | GCCGGC | 1 cut(s) | 46 |
| NheI | GCTAGC | 1 cut(s) | 3298 |
| NmeAIII | GCCGAG | 4 cut(s) | 57, 82, 459, 3505 |
| NruI | TCGCGA | 1 cut(s) | 2877 |
| NsiI | ATGCAT | 3 cut(s) | 2626, 3265, 4012 |
| NspI | RCATGY | 5 cut(s) | 812, 1793, 2519, 4415, 4825 |
| NspV | TTCGAA | 1 cut(s) | 3693 |
| PaeR7I | CTCGAG | 2 cut(s) | 4479, 4642 |
| PagI | TCATGA | 1 cut(s) | 1237 |
| PaqCI | CACCTGC | 2 cut(s) | 302, 4837 |
| PasI | CCCWGGG | 1 cut(s) | 1804 |
| PceI | AGGCCT | 1 cut(s) | 1228 |
| PciI | ACATGT | 1 cut(s) | 4821 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1453 |
| PctI | GAATGC | 3 cut(s) | 309, 3764, 5779 |
| PdiI | GCCGGC | 1 cut(s) | 48 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1363, 1717, 3594, 4969, 6393 |
| Pfl23II | CGTACG | 3 cut(s) | 139, 4945, 6356 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1421 |
| PfoI | TCCNGGA | 2 cut(s) | 728, 6089 |
| PinAI | ACCGGT | 1 cut(s) | 4586 |
| PleI | GAGTC | 6 cut(s) | 741, 832, 2491, 2989, 5296, 6258 |
| PmaCI | CACGTG | 1 cut(s) | 253 |
| PmlI | CACGTG | 1 cut(s) | 253 |
| PpsI | GAGTC | 6 cut(s) | 741, 832, 2491, 2989, 5296, 6258 |
| Ppu21I | YACGTR | 1 cut(s) | 253 |
| PpuMI | RGGWCCY | 1 cut(s) | 3269 |
| PscI | ACATGT | 1 cut(s) | 4821 |
| PshBI | ATTAAT | 2 cut(s) | 2784, 3360 |
| PsiI | TTATAA | 2 cut(s) | 1826, 3252 |
| Psp124BI | GAGCTC | 2 cut(s) | 1053, 5361 |
| Psp5II | RGGWCCY | 1 cut(s) | 3269 |
| PspCI | CACGTG | 1 cut(s) | 253 |
| PspEI | GGTNACC | 1 cut(s) | 2846 |
| PspFI | CCCAGC | 4 cut(s) | 2501, 2948, 3454, 6590 |
| PspLI | CGTACG | 3 cut(s) | 139, 4945, 6356 |
| PspPPI | RGGWCCY | 1 cut(s) | 3269 |
| PspXI | VCTCGAGB | 1 cut(s) | 4479 |
| PstI | CTGCAG | 4 cut(s) | 586, 1705, 3427, 4273 |
| PstNI | CAGNNNCTG | 7 cut(s) | 412, 1889, 2501, 3121, 3746, 6026, 6479 |
| PvuII | CAGCTG | 4 cut(s) | 1586, 3566, 4196, 6476 |
| RigI | GGCCGGCC | 1 cut(s) | 50 |
| RruI | TCGCGA | 1 cut(s) | 2877 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1490, 2304, 2528, 3205, 5631, 6012 |
| SacI | GAGCTC | 2 cut(s) | 1053, 5361 |
| SalI | GTCGAC | 1 cut(s) | 443 |
| SchI | GAGTC | 6 cut(s) | 742, 833, 2492, 2990, 5297, 6258 |
| SfcI | CTRYAG | 8 cut(s) | 582, 1260, 1267, 1701, 3423, 4269, 4536, 6076 |
| Sfr274I | CTCGAG | 2 cut(s) | 4479, 4642 |
| SfuI | TTCGAA | 1 cut(s) | 3693 |
| SgrDI | CGTCGACG | 1 cut(s) | 443 |
| SinI | GGWCC | 8 cut(s) | 179, 1340, 1963, 2169, 3269, 5453, 6017, 6208 |
| SlaI | CTCGAG | 2 cut(s) | 4479, 4642 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1490, 2304, 2528, 3205, 5631, 6012 |
| SpeI | ACTAGT | 2 cut(s) | 2359, 2456 |
| SseBI | AGGCCT | 1 cut(s) | 1228 |
| SspI | AATATT | 1 cut(s) | 1752 |
| SstI | GAGCTC | 2 cut(s) | 1053, 5361 |
| StuI | AGGCCT | 1 cut(s) | 1228 |
| StyI | CCWWGG | 9 cut(s) | 2369, 2416, 2661, 2838, 3516, 3830, 4717, 5201, 5268 |
| TaqII | GACCGA | 1 cut(s) | 6446 |
| TatI | WGTACW | 2 cut(s) | 790, 5532 |
| TspGWI | ACGGA | 7 cut(s) | 61, 573, 2827, 3599, 4933, 5148, 5832 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1421 |
| Vha464I | CTTAAG | 2 cut(s) | 3763, 4163 |
| VneI | GTGCAC | 2 cut(s) | 5196, 6005 |
| VpaK11BI | GGWCC | 8 cut(s) | 179, 1340, 1963, 2169, 3269, 5453, 6017, 6208 |
| VspI | ATTAAT | 2 cut(s) | 2784, 3360 |
| XceI | RCATGY | 5 cut(s) | 812, 1793, 2519, 4415, 4825 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 409, 1973, 3960 |
| XhoI | CTCGAG | 2 cut(s) | 4479, 4642 |
| XmiI | GTMKAC | 3 cut(s) | 444, 2984, 4920 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1363, 1717, 3594, 4969, 6393 |
| ZraI | GACGTC | 2 cut(s) | 136, 442 |
| Zsp2I | ATGCAT | 3 cut(s) | 2626, 3265, 4012 |