methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01460 |
| fragaria_vesca | FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 |
| malus_domestica | MD09G1035200.v1.1 MD17G1035500.v1.1 |
| prunus_persica | Prupe.3G283100_v2.0.a1 |
| pyrus_communis | pycom111g02810 pycom17g03270 |
| rosa_chinensis | RchiOBHm_Chr2g0171081 |
| rosa_laevigata | RLG00000022001 |
| rosa_multiflora | Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080830 |
| rosa_rugosa | Rorug02G0553500 Rorug02G0553600 |
| rosa_samantha | Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100 |
| rosa_wichuraiana | Rw2G051900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1847, 3398 |
| AarI | CACCTGC | 1 cut(s) | 299 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 335 |
| Acc36I | ACCTGC | 3 cut(s) | 299, 1912, 4428 |
| AccB1I | GGYRCC | 3 cut(s) | 2042, 2441, 6782 |
| AccBSI | CCGCTC | 1 cut(s) | 385 |
| AccI | GTMKAC | 3 cut(s) | 1507, 1918, 5602 |
| AccII | CGCG | 6 cut(s) | 204, 243, 306, 422, 4086, 5828 |
| AccIII | TCCGGA | 1 cut(s) | 560 |
| AcoI | YGGCCR | 7 cut(s) | 180, 307, 380, 459, 1283, 2816, 6232 |
| AcuI | CTGAAG | 7 cut(s) | 776, 2604, 3538, 4196, 4764, 6363, 6753 |
| AcvI | CACGTG | 1 cut(s) | 250 |
| AcyI | GRCGYC | 2 cut(s) | 39, 4051 |
| AdeI | CACNNNGTG | 2 cut(s) | 253, 1451 |
| AfaI | GTAC | 8 cut(s) | 557, 908, 1954, 3897, 4663, 5006, 5567, 6476 |
| AflIII | ACRYGT | 3 cut(s) | 247, 420, 4084 |
| AhlI | ACTAGT | 2 cut(s) | 1463, 2888 |
| AjiI | CACGTC | 2 cut(s) | 133, 457 |
| AjnI | CCWGG | 4 cut(s) | 312, 2038, 2436, 5023 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 6804, 6836 |
| AleI | CACNNNNGTG | 1 cut(s) | 1188 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1309, 1341, 5361, 5393 |
| Alw21I | GWGCWC | 7 cut(s) | 532, 868, 1400, 2264, 2667, 2943, 5678 |
| Alw26I | GTCTC | 4 cut(s) | 635, 3683, 4768, 5091 |
| Alw44I | GTGCAC | 1 cut(s) | 5674 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 644, 1148, 3136, 5411, 5687, 6104 |
| Ama87I | CYCGRG | 7 cut(s) | 71, 233, 1979, 2263, 2504, 4491, 6205 |
| Aor13HI | TCCGGA | 1 cut(s) | 560 |
| ApaLI | GTGCAC | 1 cut(s) | 5674 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3731, 3763 |
| AseI | ATTAAT | 4 cut(s) | 2802, 3375, 5262, 6014 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 750, 1390, 4987, 6283, 6829 |
| AspLEI | GCGC | 6 cut(s) | 218, 296, 306, 2322, 3130, 4490 |
| AsuC2I | CCSGG | 8 cut(s) | 35, 171, 179, 192, 495, 2047, 4413, 6787 |
| AsuNHI | GCTAGC | 1 cut(s) | 3313 |
| AvaI | CYCGRG | 7 cut(s) | 71, 233, 1979, 2263, 2504, 4491, 6205 |
| AxyI | CCTNAGG | 5 cut(s) | 3280, 4035, 5680, 6024, 6479 |
| BaeGI | GKGCMC | 4 cut(s) | 2047, 2444, 5678, 6785 |
| BalI | TGGCCA | 2 cut(s) | 2818, 6234 |
| BamHI | GGATCC | 5 cut(s) | 93, 2268, 3211, 3584, 3960 |
| BanI | GGYRCC | 3 cut(s) | 2042, 2441, 6782 |
| BanII | GRGCYC | 1 cut(s) | 6630 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6321, 6353 |
| BbrPI | CACGTG | 1 cut(s) | 250 |
| BbsI | GAAGAC | 1 cut(s) | 989 |
| Bbv12I | GWGCWC | 7 cut(s) | 532, 868, 1400, 2264, 2667, 2943, 5678 |
| BbvCI | CCTCAGC | 1 cut(s) | 2211 |
| BceAI | ACGGC | 5 cut(s) | 280, 454, 460, 4038, 4657 |
| BciT130I | CCWGG | 4 cut(s) | 314, 2040, 2438, 5025 |
| BciVI | GTATCC | 2 cut(s) | 4741, 4811 |
| BclI | TGATCA | 3 cut(s) | 1468, 2230, 3661 |
| BcnI | CCSGG | 8 cut(s) | 35, 171, 179, 192, 495, 2047, 4413, 6787 |
| BcoDI | GTCTC | 4 cut(s) | 635, 3683, 4768, 5091 |
| BcuI | ACTAGT | 2 cut(s) | 1463, 2888 |
| BfoI | RGCGCY | 2 cut(s) | 2323, 4491 |
| BfuAI | ACCTGC | 3 cut(s) | 299, 1912, 4428 |
| BfuI | GTATCC | 2 cut(s) | 4741, 4811 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 357, 2207 |
| BglII | AGATCT | 2 cut(s) | 2407, 5883 |
| BlpI | GCTNAGC | 3 cut(s) | 48, 4833, 6066 |
| BmeT110I | CYCGRG | 7 cut(s) | 71, 233, 1979, 2263, 2504, 4491, 6205 |
| BmgBI | CACGTC | 2 cut(s) | 133, 457 |
| BmrI | ACTGGG | 4 cut(s) | 426, 5017, 6247, 6698 |
| BmtI | GCTAGC | 1 cut(s) | 3317 |
| BmuI | ACTGGG | 4 cut(s) | 426, 5017, 6247, 6698 |
| BpiI | GAAGAC | 1 cut(s) | 989 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2257, 2289, 4874, 4906, 5873, 5905 |
| BpmI | CTGGAG | 8 cut(s) | 90, 516, 818, 2742, 2979, 4578, 5492, 6473 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2211 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 48, 4833, 6066 |
| BpuEI | CTTGAG | 6 cut(s) | 2390, 2891, 3589, 4283, 4901, 6290 |
| BpuMI | CCSGG | 8 cut(s) | 35, 171, 179, 192, 495, 2047, 4413, 6787 |
| Bsa29I | ATCGAT | 2 cut(s) | 78, 4247 |
| BsaAI | YACGTR | 3 cut(s) | 250, 2462, 3647 |
| BsaBI | GATNNNNATC | 2 cut(s) | 3210, 3377 |
| BsaHI | GRCGYC | 2 cut(s) | 39, 4051 |
| BsaI | GGTCTC | 1 cut(s) | 5091 |
| BsaWI | WCCGGW | 4 cut(s) | 118, 138, 560, 2561 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1774, 1804, 4853, 4883 |
| Bse21I | CCTNAGG | 5 cut(s) | 3280, 4035, 5680, 6024, 6479 |
| Bse3DI | GCAATG | 4 cut(s) | 2096, 2574, 3280, 5608 |
| Bse8I | GATNNNNATC | 2 cut(s) | 3210, 3377 |
| BseAI | TCCGGA | 1 cut(s) | 560 |
| BseBI | CCWGG | 4 cut(s) | 314, 2040, 2438, 5025 |
| BseCI | ATCGAT | 2 cut(s) | 78, 4247 |
| BseJI | GATNNNNATC | 2 cut(s) | 3210, 3377 |
| BseMI | GCAATG | 4 cut(s) | 2096, 2574, 3280, 5608 |
| BseRI | GAGGAG | 4 cut(s) | 2232, 3737, 3939, 6012 |
| BseSI | GKGCMC | 4 cut(s) | 2047, 2444, 5678, 6785 |
| BseX3I | CGGCCG | 2 cut(s) | 180, 307 |
| BseYI | CCCAGC | 4 cut(s) | 2141, 3469, 3526, 6629 |
| BsgI | GTGCAG | 5 cut(s) | 1226, 2262, 2679, 5087, 6117 |
| Bsh1236I | CGCG | 6 cut(s) | 204, 243, 306, 422, 4086, 5828 |
| Bsh1285I | CGRYCG | 4 cut(s) | 183, 202, 310, 4251 |
| BshNI | GGYRCC | 3 cut(s) | 2042, 2441, 6782 |
| BshVI | ATCGAT | 2 cut(s) | 78, 4247 |
| BsiEI | CGRYCG | 4 cut(s) | 183, 202, 310, 4251 |
| BsiHKAI | GWGCWC | 7 cut(s) | 532, 868, 1400, 2264, 2667, 2943, 5678 |
| BsiHKCI | CYCGRG | 7 cut(s) | 71, 233, 1979, 2263, 2504, 4491, 6205 |
| BslFI | GGGAC | 7 cut(s) | 50, 3508, 3525, 4395, 5172, 6233, 6802 |
| BsmAI | GTCTC | 4 cut(s) | 635, 3683, 4768, 5091 |
| BsmBI | CGTCTC | 1 cut(s) | 3683 |
| BsmFI | GGGAC | 7 cut(s) | 50, 3508, 3525, 4395, 5172, 6233, 6802 |
| BsmI | GAATGC | 3 cut(s) | 306, 2543, 4630 |
| Bso31I | GGTCTC | 1 cut(s) | 5091 |
| BsoBI | CYCGRG | 7 cut(s) | 71, 233, 1979, 2263, 2504, 4491, 6205 |
| Bsp13I | TCCGGA | 1 cut(s) | 560 |
| Bsp1407I | TGTACA | 1 cut(s) | 5565 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 48, 4833, 6066 |
| Bsp19I | CCATGG | 4 cut(s) | 1087, 2326, 2856, 3531 |
| BspDI | ATCGAT | 2 cut(s) | 78, 4247 |
| BspEI | TCCGGA | 1 cut(s) | 560 |
| BspFNI | CGCG | 6 cut(s) | 204, 243, 306, 422, 4086, 5828 |
| BspHI | TCATGA | 2 cut(s) | 1264, 5290 |
| BspMAI | CTGCAG | 5 cut(s) | 5692, 6007, 6109, 6520, 6841 |
| BspMI | ACCTGC | 3 cut(s) | 299, 1912, 4428 |
| BspOI | GCTAGC | 1 cut(s) | 3317 |
| BspT107I | GGYRCC | 3 cut(s) | 2042, 2441, 6782 |
| BspTNI | GGTCTC | 1 cut(s) | 5091 |
| BsrBI | CCGCTC | 1 cut(s) | 385 |
| BsrDI | GCAATG | 4 cut(s) | 2096, 2574, 3280, 5608 |
| BsrGI | TGTACA | 1 cut(s) | 5565 |
| BssNAI | GTATAC | 2 cut(s) | 1508, 1919 |
| BssNI | GRCGYC | 2 cut(s) | 39, 4051 |
| Bst1107I | GTATAC | 2 cut(s) | 1508, 1919 |
| Bst2UI | CCWGG | 4 cut(s) | 314, 2040, 2438, 5025 |
| Bst6I | CTCTTC | 8 cut(s) | 949, 1087, 2154, 4122, 4305, 5760, 5874, 6184 |
| BstACI | GRCGYC | 2 cut(s) | 39, 4051 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 793, 4267, 6017, 6104 |
| BstAUI | TGTACA | 1 cut(s) | 5565 |
| BstBAI | YACGTR | 3 cut(s) | 250, 2462, 3647 |
| BstDSI | CCRYGG | 6 cut(s) | 241, 1087, 2326, 2856, 3531, 4054 |
| BstEII | GGTNACC | 1 cut(s) | 2864 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4952 |
| BstFNI | CGCG | 6 cut(s) | 204, 243, 306, 422, 4086, 5828 |
| BstH2I | RGCGCY | 2 cut(s) | 2323, 4491 |
| BstHHI | GCGC | 6 cut(s) | 218, 296, 306, 2322, 3130, 4490 |
| BstMAI | GTCTC | 4 cut(s) | 635, 3683, 4768, 5091 |
| BstMCI | CGRYCG | 4 cut(s) | 183, 202, 310, 4251 |
| BstNI | CCWGG | 4 cut(s) | 314, 2040, 2438, 5025 |
| BstNSI | RCATGY | 4 cut(s) | 608, 1814, 4427, 6728 |
| BstPI | GGTNACC | 1 cut(s) | 2864 |
| BstSLI | GKGCMC | 4 cut(s) | 2047, 2444, 5678, 6785 |
| BstSNI | TACGTA | 1 cut(s) | 3647 |
| BstUI | CGCG | 6 cut(s) | 204, 243, 306, 422, 4086, 5828 |
| BstV2I | GAAGAC | 1 cut(s) | 989 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3222, 5470 |
| BstZ17I | GTATAC | 2 cut(s) | 1508, 1919 |
| BstZI | CGGCCG | 2 cut(s) | 180, 307 |
| Bsu15I | ATCGAT | 2 cut(s) | 78, 4247 |
| Bsu36I | CCTNAGG | 5 cut(s) | 3280, 4035, 5680, 6024, 6479 |
| BsuI | GTATCC | 2 cut(s) | 4741, 4811 |
| BsuTUI | ATCGAT | 2 cut(s) | 78, 4247 |
| BtgI | CCRYGG | 6 cut(s) | 241, 1087, 2326, 2856, 3531, 4054 |
| BtrI | CACGTC | 2 cut(s) | 133, 457 |
| BtsI | GCAGTG | 2 cut(s) | 2651, 6754 |
| BveI | ACCTGC | 3 cut(s) | 299, 1912, 4428 |
| CaiI | CAGNNNCTG | 6 cut(s) | 644, 1148, 3136, 5411, 5687, 6104 |
| CciI | TCATGA | 2 cut(s) | 1264, 5290 |
| CciNI | GCGGCCGC | 1 cut(s) | 307 |
| CfoI | GCGC | 6 cut(s) | 218, 296, 306, 2322, 3130, 4490 |
| Cfr42I | CCGCGG | 1 cut(s) | 244 |
| ClaI | ATCGAT | 2 cut(s) | 78, 4247 |
| CseI | GACGC | 6 cut(s) | 47, 411, 458, 4011, 4059, 6254 |
| Csp6I | GTAC | 8 cut(s) | 556, 907, 1953, 3896, 4662, 5005, 5566, 6475 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3850, 3885 |
| CviQI | GTAC | 8 cut(s) | 556, 907, 1953, 3896, 4662, 5005, 5566, 6475 |
| DraI | TTTAAA | 3 cut(s) | 823, 2454, 3339 |
| DraIII | CACNNNGTG | 2 cut(s) | 253, 1451 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 335 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 335 |
| EaeI | YGGCCR | 7 cut(s) | 180, 307, 380, 459, 1283, 2816, 6232 |
| EagI | CGGCCG | 2 cut(s) | 180, 307 |
| Eam1104I | CTCTTC | 8 cut(s) | 949, 1087, 2154, 4122, 4305, 5760, 5874, 6184 |
| EarI | CTCTTC | 8 cut(s) | 949, 1087, 2154, 4122, 4305, 5760, 5874, 6184 |
| EciI | GGCGGA | 3 cut(s) | 153, 1099, 3609 |
| EclXI | CGGCCG | 2 cut(s) | 180, 307 |
| Eco105I | TACGTA | 1 cut(s) | 3647 |
| Eco147I | AGGCCT | 1 cut(s) | 5287 |
| Eco24I | GRGCYC | 1 cut(s) | 6630 |
| Eco31I | GGTCTC | 1 cut(s) | 5091 |
| Eco32I | GATATC | 5 cut(s) | 415, 3829, 5515, 6179, 6762 |
| Eco52I | CGGCCG | 2 cut(s) | 180, 307 |
| Eco57I | CTGAAG | 7 cut(s) | 776, 2604, 3538, 4196, 4764, 6363, 6753 |
| Eco72I | CACGTG | 1 cut(s) | 250 |
| Eco81I | CCTNAGG | 5 cut(s) | 3280, 4035, 5680, 6024, 6479 |
| Eco88I | CYCGRG | 7 cut(s) | 71, 233, 1979, 2263, 2504, 4491, 6205 |
| Eco91I | GGTNACC | 1 cut(s) | 2864 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4952 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1254, 3284, 3522 |
| EcoO65I | GGTNACC | 1 cut(s) | 2864 |
| EcoRI | GAATTC | 4 cut(s) | 3487, 4145, 4201, 5113 |
| EcoRII | CCWGG | 4 cut(s) | 312, 2038, 2436, 5023 |
| EcoRV | GATATC | 5 cut(s) | 415, 3829, 5515, 6179, 6762 |
| EcoT22I | ATGCAT | 4 cut(s) | 1172, 2545, 4110, 4632 |
| EcoT38I | GRGCYC | 1 cut(s) | 6630 |
| Esp3I | CGTCTC | 1 cut(s) | 3683 |
| FaqI | GGGAC | 7 cut(s) | 50, 3508, 3525, 4395, 5172, 6233, 6802 |
| FauI | CCCGC | 6 cut(s) | 218, 353, 931, 1669, 2733, 2959 |
| FauNDI | CATATG | 4 cut(s) | 2553, 4626, 4839, 5869 |
| FbaI | TGATCA | 3 cut(s) | 1468, 2230, 3661 |
| FblI | GTMKAC | 3 cut(s) | 1507, 1918, 5602 |
| FriOI | GRGCYC | 1 cut(s) | 6630 |
| GlaI | GCGC | 6 cut(s) | 217, 295, 305, 2321, 3129, 4489 |
| GsaI | CCCAGC | 4 cut(s) | 2145, 3473, 3530, 6633 |
| GsuI | CTGGAG | 8 cut(s) | 90, 516, 818, 2742, 2979, 4578, 5492, 6473 |
| HaeII | RGCGCY | 2 cut(s) | 2323, 4491 |
| HgaI | GACGC | 6 cut(s) | 47, 411, 458, 4011, 4059, 6254 |
| HhaI | GCGC | 6 cut(s) | 218, 296, 306, 2322, 3130, 4490 |
| Hin1I | GRCGYC | 2 cut(s) | 39, 4051 |
| Hin6I | GCGC | 6 cut(s) | 216, 294, 304, 2320, 3128, 4488 |
| HinP1I | GCGC | 6 cut(s) | 216, 294, 304, 2320, 3128, 4488 |
| HincII | GTYRAC | 2 cut(s) | 921, 4591 |
| HindII | GTYRAC | 2 cut(s) | 921, 4591 |
| HindIII | AAGCTT | 6 cut(s) | 585, 2448, 3198, 3606, 5056, 6348 |
| Hpy99I | CGWCG | 8 cut(s) | 29, 58, 266, 427, 446, 452, 3429, 4053 |
| HpyCH4IV | ACGT | 6 cut(s) | 132, 249, 456, 2461, 3646, 3692 |
| HpySE526I | ACGT | 6 cut(s) | 132, 249, 456, 2461, 3646, 3692 |
| Hsp92I | GRCGYC | 2 cut(s) | 39, 4051 |
| HspAI | GCGC | 6 cut(s) | 216, 294, 304, 2320, 3128, 4488 |
| KflI | GGGWCCC | 1 cut(s) | 3522 |
| Kpn2I | TCCGGA | 1 cut(s) | 560 |
| Ksp22I | TGATCA | 3 cut(s) | 1468, 2230, 3661 |
| KspI | CCGCGG | 1 cut(s) | 244 |
| MaeII | ACGT | 6 cut(s) | 132, 249, 456, 2461, 3646, 3692 |
| MbiI | CCGCTC | 1 cut(s) | 385 |
| MfeI | CAATTG | 3 cut(s) | 1610, 6219, 6444 |
| MlsI | TGGCCA | 2 cut(s) | 2818, 6234 |
| MluI | ACGCGT | 2 cut(s) | 420, 4084 |
| MluNI | TGGCCA | 2 cut(s) | 2818, 6234 |
| MmeI | TCCRAC | 6 cut(s) | 1863, 2089, 3747, 4467, 5481, 6256 |
| Mox20I | TGGCCA | 2 cut(s) | 2818, 6234 |
| Mph1103I | ATGCAT | 4 cut(s) | 1172, 2545, 4110, 4632 |
| MroI | TCCGGA | 1 cut(s) | 560 |
| MroXI | GAANNNNTTC | 5 cut(s) | 750, 1390, 4987, 6283, 6829 |
| MscI | TGGCCA | 2 cut(s) | 2818, 6234 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1188, 2552, 3220, 4155, 4422, 5664 |
| Msp20I | TGGCCA | 2 cut(s) | 2818, 6234 |
| MspA1I | CMGCKG | 9 cut(s) | 243, 686, 2582, 3581, 4208, 6134, 6515, 6721, 6773 |
| MunI | CAATTG | 3 cut(s) | 1610, 6219, 6444 |
| Mva1269I | GAATGC | 3 cut(s) | 306, 2543, 4630 |
| MvaI | CCWGG | 4 cut(s) | 314, 2040, 2438, 5025 |
| MvnI | CGCG | 6 cut(s) | 204, 243, 306, 422, 4086, 5828 |
| NciI | CCSGG | 8 cut(s) | 35, 171, 179, 192, 495, 2047, 4413, 6787 |
| NcoI | CCATGG | 4 cut(s) | 1087, 2326, 2856, 3531 |
| NdeI | CATATG | 4 cut(s) | 2553, 4626, 4839, 5869 |
| NheI | GCTAGC | 1 cut(s) | 3313 |
| NmeAIII | GCCGAG | 4 cut(s) | 188, 487, 3520, 5399 |
| NmuCI | GTSAC | 7 cut(s) | 434, 535, 1481, 2288, 4098, 4908, 5899 |
| NotI | GCGGCCGC | 1 cut(s) | 307 |
| NsiI | ATGCAT | 4 cut(s) | 1172, 2545, 4110, 4632 |
| NspI | RCATGY | 4 cut(s) | 608, 1814, 4427, 6728 |
| OliI | CACNNNNGTG | 1 cut(s) | 1188 |
| PaeI | GCATGC | 1 cut(s) | 6728 |
| PaeR7I | CTCGAG | 2 cut(s) | 1979, 2263 |
| PagI | TCATGA | 2 cut(s) | 1264, 5290 |
| PaqCI | CACCTGC | 1 cut(s) | 299 |
| PceI | AGGCCT | 1 cut(s) | 5287 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 444 |
| PctI | GAATGC | 3 cut(s) | 306, 2543, 4630 |
| PdmI | GAANNNNTTC | 5 cut(s) | 750, 1390, 4987, 6283, 6829 |
| PflFI | GACNNNGTC | 2 cut(s) | 29, 134 |
| PfoI | TCCNGGA | 2 cut(s) | 33, 190 |
| Ple19I | CGATCG | 1 cut(s) | 4251 |
| PmaCI | CACGTG | 1 cut(s) | 250 |
| PmlI | CACGTG | 1 cut(s) | 250 |
| Ppu21I | YACGTR | 3 cut(s) | 250, 2462, 3647 |
| PpuMI | RGGWCCY | 2 cut(s) | 3284, 3522 |
| PshBI | ATTAAT | 4 cut(s) | 2802, 3375, 5262, 6014 |
| PsiI | TTATAA | 2 cut(s) | 1847, 3398 |
| Psp5II | RGGWCCY | 2 cut(s) | 3284, 3522 |
| Psp6I | CCWGG | 4 cut(s) | 312, 2038, 2436, 5023 |
| PspCI | CACGTG | 1 cut(s) | 250 |
| PspEI | GGTNACC | 1 cut(s) | 2864 |
| PspFI | CCCAGC | 4 cut(s) | 2141, 3469, 3526, 6629 |
| PspGI | CCWGG | 4 cut(s) | 312, 2038, 2436, 5023 |
| PspPPI | RGGWCCY | 2 cut(s) | 3284, 3522 |
| PspXI | VCTCGAGB | 2 cut(s) | 1979, 2263 |
| PstI | CTGCAG | 5 cut(s) | 5692, 6007, 6109, 6520, 6841 |
| PstNI | CAGNNNCTG | 6 cut(s) | 644, 1148, 3136, 5411, 5687, 6104 |
| PsyI | GACNNNGTC | 2 cut(s) | 29, 134 |
| PvuI | CGATCG | 1 cut(s) | 4251 |
| PvuII | CAGCTG | 6 cut(s) | 686, 2582, 3581, 4208, 6134, 6515 |
| RsaI | GTAC | 8 cut(s) | 557, 908, 1954, 3897, 4663, 5006, 5567, 6476 |
| RsaNI | GTAC | 8 cut(s) | 556, 907, 1953, 3896, 4662, 5005, 5566, 6475 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1188, 2552, 3220, 4155, 4422, 5664 |
| SacII | CCGCGG | 1 cut(s) | 244 |
| Sfr274I | CTCGAG | 2 cut(s) | 1979, 2263 |
| Sfr303I | CCGCGG | 1 cut(s) | 244 |
| SgrBI | CCGCGG | 1 cut(s) | 244 |
| SlaI | CTCGAG | 2 cut(s) | 1979, 2263 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1188, 2552, 3220, 4155, 4422, 5664 |
| SmlI | CTYRAG | 8 cut(s) | 1979, 2263, 2369, 2870, 3568, 4298, 4880, 6305 |
| SmoI | CTYRAG | 8 cut(s) | 1979, 2263, 2369, 2870, 3568, 4298, 4880, 6305 |
| SnaBI | TACGTA | 1 cut(s) | 3647 |
| SpeI | ACTAGT | 2 cut(s) | 1463, 2888 |
| SphI | GCATGC | 1 cut(s) | 6728 |
| SseBI | AGGCCT | 1 cut(s) | 5287 |
| SspI | AATATT | 1 cut(s) | 5325 |
| StuI | AGGCCT | 1 cut(s) | 5287 |
| TaiI | ACGT | 6 cut(s) | 135, 252, 459, 2464, 3649, 3695 |
| TaqII | GACCGA | 2 cut(s) | 4504, 6485 |
| TatI | WGTACW | 4 cut(s) | 555, 4661, 5004, 5565 |
| TseFI | GTSAC | 7 cut(s) | 434, 535, 1481, 2288, 4098, 4908, 5899 |
| Tsp45I | GTSAC | 7 cut(s) | 434, 535, 1481, 2288, 4098, 4908, 5899 |
| TspGWI | ACGGA | 9 cut(s) | 1506, 1795, 2845, 3382, 3413, 3602, 4766, 5107, 5478 |
| Tth111I | GACNNNGTC | 2 cut(s) | 29, 134 |
| VneI | GTGCAC | 1 cut(s) | 5674 |
| VspI | ATTAAT | 4 cut(s) | 2802, 3375, 5262, 6014 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4952 |
| XbaI | TCTAGA | 2 cut(s) | 4304, 6296 |
| XceI | RCATGY | 4 cut(s) | 608, 1814, 4427, 6728 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3972 |
| XhoI | CTCGAG | 2 cut(s) | 1979, 2263 |
| XmiI | GTMKAC | 3 cut(s) | 1507, 1918, 5602 |
| XmnI | GAANNNNTTC | 5 cut(s) | 750, 1390, 4987, 6283, 6829 |
| Zsp2I | ATGCAT | 4 cut(s) | 1172, 2545, 4110, 4632 |