methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01460 |
| fragaria_vesca | FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 |
| malus_domestica | MD09G1035200.v1.1 MD17G1035500.v1.1 |
| prunus_persica | Prupe.3G283100_v2.0.a1 |
| pyrus_communis | pycom111g02810 pycom17g03270 |
| rosa_chinensis | RchiOBHm_Chr2g0171081 |
| rosa_laevigata | RLG00000022001 |
| rosa_multiflora | Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080830 |
| rosa_rugosa | Rorug02G0553500 Rorug02G0553600 |
| rosa_samantha | Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100 |
| rosa_wichuraiana | Rw2G051900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1853 |
| AarI | CACCTGC | 2 cut(s) | 302, 4858 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 338 |
| Acc36I | ACCTGC | 4 cut(s) | 302, 1918, 4434, 4858 |
| AccB1I | GGYRCC | 2 cut(s) | 2048, 2447 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1451 |
| AccBSI | CCGCTC | 1 cut(s) | 388 |
| AccI | GTMKAC | 3 cut(s) | 1513, 1924, 5605 |
| AccII | CGCG | 7 cut(s) | 207, 246, 309, 425, 4028, 4092, 5831 |
| AccIII | TCCGGA | 1 cut(s) | 563 |
| AcoI | YGGCCR | 7 cut(s) | 183, 310, 383, 462, 1286, 2822, 6235 |
| AcuI | CTGAAG | 6 cut(s) | 779, 2610, 3544, 4202, 4767, 6366 |
| AcvI | CACGTG | 1 cut(s) | 253 |
| AcyI | GRCGYC | 2 cut(s) | 42, 4057 |
| AdeI | CACNNNGTG | 2 cut(s) | 256, 1454 |
| AflIII | ACRYGT | 5 cut(s) | 250, 423, 1491, 4026, 4090 |
| AhlI | ACTAGT | 1 cut(s) | 2894 |
| AjiI | CACGTC | 2 cut(s) | 136, 460 |
| AjnI | CCWGG | 5 cut(s) | 315, 2044, 2442, 2531, 5026 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 6036, 6068 |
| AleI | CACNNNNGTG | 1 cut(s) | 1191 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1312, 1344, 5364, 5396 |
| Alw21I | GWGCWC | 5 cut(s) | 535, 871, 1403, 2673, 3321 |
| Alw26I | GTCTC | 5 cut(s) | 638, 3689, 4771, 5094, 6196 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 647, 1151, 3142, 5690 |
| Ama87I | CYCGRG | 5 cut(s) | 74, 236, 1985, 3286, 4497 |
| Aor13HI | TCCGGA | 1 cut(s) | 563 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3737, 3769 |
| AseI | ATTAAT | 4 cut(s) | 2808, 3381, 5265, 6017 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 753, 1393, 4990, 6286 |
| AspLEI | GCGC | 6 cut(s) | 221, 299, 309, 2328, 3136, 4496 |
| AsuC2I | CCSGG | 7 cut(s) | 38, 174, 182, 195, 498, 1684, 4419 |
| AvaI | CYCGRG | 5 cut(s) | 74, 236, 1985, 3286, 4497 |
| AxyI | CCTNAGG | 3 cut(s) | 4041, 6027, 6482 |
| BaeGI | GKGCMC | 2 cut(s) | 2053, 2450 |
| BalI | TGGCCA | 3 cut(s) | 1288, 2824, 6237 |
| BamHI | GGATCC | 5 cut(s) | 96, 2274, 3217, 3590, 3966 |
| BanI | GGYRCC | 2 cut(s) | 2048, 2447 |
| BanII | GRGCYC | 1 cut(s) | 6633 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6324, 6356 |
| BbrPI | CACGTG | 1 cut(s) | 253 |
| BbsI | GAAGAC | 1 cut(s) | 992 |
| Bbv12I | GWGCWC | 5 cut(s) | 535, 871, 1403, 2673, 3321 |
| BbvCI | CCTCAGC | 1 cut(s) | 2217 |
| BceAI | ACGGC | 5 cut(s) | 283, 457, 463, 4044, 4660 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1600, 1634, 4589, 4623, 6433, 6467 |
| BciT130I | CCWGG | 5 cut(s) | 317, 2046, 2444, 2533, 5028 |
| BciVI | GTATCC | 3 cut(s) | 4744, 4814, 6097 |
| BclI | TGATCA | 3 cut(s) | 1474, 2236, 3667 |
| BcnI | CCSGG | 7 cut(s) | 38, 174, 182, 195, 498, 1684, 4419 |
| BcoDI | GTCTC | 5 cut(s) | 638, 3689, 4771, 5094, 6196 |
| BcuI | ACTAGT | 1 cut(s) | 2894 |
| BfmI | CTRYAG | 9 cut(s) | 4287, 4554, 4938, 5217, 5691, 5730, 6006, 6108, 6519 |
| BfoI | RGCGCY | 2 cut(s) | 2329, 4497 |
| BfuAI | ACCTGC | 4 cut(s) | 302, 1918, 4434, 4858 |
| BfuI | GTATCC | 3 cut(s) | 4744, 4814, 6097 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 360, 2213 |
| BglII | AGATCT | 2 cut(s) | 2413, 5886 |
| BlpI | GCTNAGC | 2 cut(s) | 51, 6069 |
| BmeT110I | CYCGRG | 5 cut(s) | 74, 236, 1985, 3286, 4497 |
| BmgBI | CACGTC | 2 cut(s) | 136, 460 |
| BmrI | ACTGGG | 4 cut(s) | 1413, 2047, 5020, 6250 |
| BmuI | ACTGGG | 4 cut(s) | 1413, 2047, 5020, 6250 |
| BpiI | GAAGAC | 1 cut(s) | 992 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 2263, 2295, 4877, 4909, 5876, 5908 |
| BpmI | CTGGAG | 8 cut(s) | 93, 519, 821, 2748, 2985, 4584, 5495, 6476 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2217 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 51, 6069 |
| BpuEI | CTTGAG | 8 cut(s) | 2290, 2396, 2897, 3595, 4289, 4904, 5675, 6293 |
| BpuMI | CCSGG | 7 cut(s) | 38, 174, 182, 195, 498, 1684, 4419 |
| Bsa29I | ATCGAT | 1 cut(s) | 81 |
| BsaAI | YACGTR | 4 cut(s) | 253, 1494, 2468, 3653 |
| BsaBI | GATNNNNATC | 3 cut(s) | 3216, 3383, 4282 |
| BsaHI | GRCGYC | 2 cut(s) | 42, 4057 |
| BsaI | GGTCTC | 2 cut(s) | 5094, 6196 |
| BsaWI | WCCGGW | 4 cut(s) | 121, 141, 563, 2567 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1780, 1810, 4856, 4886 |
| Bse21I | CCTNAGG | 3 cut(s) | 4041, 6027, 6482 |
| Bse3DI | GCAATG | 4 cut(s) | 629, 2580, 3286, 5611 |
| Bse8I | GATNNNNATC | 3 cut(s) | 3216, 3383, 4282 |
| BseAI | TCCGGA | 1 cut(s) | 563 |
| BseBI | CCWGG | 5 cut(s) | 317, 2046, 2444, 2533, 5028 |
| BseCI | ATCGAT | 1 cut(s) | 81 |
| BseJI | GATNNNNATC | 3 cut(s) | 3216, 3383, 4282 |
| BseMI | GCAATG | 4 cut(s) | 629, 2580, 3286, 5611 |
| BseRI | GAGGAG | 4 cut(s) | 2238, 3743, 3945, 6015 |
| BseSI | GKGCMC | 2 cut(s) | 2053, 2450 |
| BseX3I | CGGCCG | 2 cut(s) | 183, 310 |
| BseYI | CCCAGC | 4 cut(s) | 2147, 3475, 3532, 6632 |
| BsgI | GTGCAG | 4 cut(s) | 1229, 2268, 2685, 5090 |
| Bsh1236I | CGCG | 7 cut(s) | 207, 246, 309, 425, 4028, 4092, 5831 |
| Bsh1285I | CGRYCG | 4 cut(s) | 186, 205, 313, 4280 |
| BshNI | GGYRCC | 2 cut(s) | 2048, 2447 |
| BshVI | ATCGAT | 1 cut(s) | 81 |
| BsiEI | CGRYCG | 4 cut(s) | 186, 205, 313, 4280 |
| BsiHKAI | GWGCWC | 5 cut(s) | 535, 871, 1403, 2673, 3321 |
| BsiHKCI | CYCGRG | 5 cut(s) | 74, 236, 1985, 3286, 4497 |
| BsiWI | CGTACG | 1 cut(s) | 1494 |
| BslFI | GGGAC | 6 cut(s) | 53, 3303, 3514, 3531, 4401, 6236 |
| BsmAI | GTCTC | 5 cut(s) | 638, 3689, 4771, 5094, 6196 |
| BsmBI | CGTCTC | 1 cut(s) | 3689 |
| BsmFI | GGGAC | 6 cut(s) | 53, 3303, 3514, 3531, 4401, 6236 |
| BsmI | GAATGC | 3 cut(s) | 309, 2549, 4633 |
| Bso31I | GGTCTC | 2 cut(s) | 5094, 6196 |
| BsoBI | CYCGRG | 5 cut(s) | 74, 236, 1985, 3286, 4497 |
| Bsp1286I | GDGCHC | 8 cut(s) | 535, 871, 1403, 2053, 2450, 2673, 3321, 6633 |
| Bsp13I | TCCGGA | 1 cut(s) | 563 |
| Bsp1407I | TGTACA | 1 cut(s) | 5568 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 51, 6069 |
| Bsp19I | CCATGG | 4 cut(s) | 1090, 2332, 2862, 3537 |
| BspDI | ATCGAT | 1 cut(s) | 81 |
| BspEI | TCCGGA | 1 cut(s) | 563 |
| BspFNI | CGCG | 7 cut(s) | 207, 246, 309, 425, 4028, 4092, 5831 |
| BspHI | TCATGA | 3 cut(s) | 1267, 1486, 5383 |
| BspMAI | CTGCAG | 4 cut(s) | 5695, 6010, 6112, 6523 |
| BspMI | ACCTGC | 4 cut(s) | 302, 1918, 4434, 4858 |
| BspT107I | GGYRCC | 2 cut(s) | 2048, 2447 |
| BspTNI | GGTCTC | 2 cut(s) | 5094, 6196 |
| BsrBI | CCGCTC | 1 cut(s) | 388 |
| BsrDI | GCAATG | 4 cut(s) | 629, 2580, 3286, 5611 |
| BsrGI | TGTACA | 1 cut(s) | 5568 |
| BssNAI | GTATAC | 2 cut(s) | 1514, 1925 |
| BssNI | GRCGYC | 2 cut(s) | 42, 4057 |
| Bst1107I | GTATAC | 2 cut(s) | 1514, 1925 |
| Bst2UI | CCWGG | 5 cut(s) | 317, 2046, 2444, 2533, 5028 |
| Bst6I | CTCTTC | 7 cut(s) | 952, 1090, 2160, 4128, 4311, 5763, 5877 |
| BstACI | GRCGYC | 2 cut(s) | 42, 4057 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 796, 4273 |
| BstAUI | TGTACA | 1 cut(s) | 5568 |
| BstBAI | YACGTR | 4 cut(s) | 253, 1494, 2468, 3653 |
| BstDSI | CCRYGG | 6 cut(s) | 244, 1090, 2332, 2862, 3537, 4060 |
| BstEII | GGTNACC | 1 cut(s) | 2870 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4955 |
| BstFNI | CGCG | 7 cut(s) | 207, 246, 309, 425, 4028, 4092, 5831 |
| BstH2I | RGCGCY | 2 cut(s) | 2329, 4497 |
| BstHHI | GCGC | 6 cut(s) | 221, 299, 309, 2328, 3136, 4496 |
| BstMAI | GTCTC | 5 cut(s) | 638, 3689, 4771, 5094, 6196 |
| BstMCI | CGRYCG | 4 cut(s) | 186, 205, 313, 4280 |
| BstNI | CCWGG | 5 cut(s) | 317, 2046, 2444, 2533, 5028 |
| BstNSI | RCATGY | 4 cut(s) | 611, 1820, 4433, 5683 |
| BstPI | GGTNACC | 1 cut(s) | 2870 |
| BstSFI | CTRYAG | 9 cut(s) | 4287, 4554, 4938, 5217, 5691, 5730, 6006, 6108, 6519 |
| BstSLI | GKGCMC | 2 cut(s) | 2053, 2450 |
| BstSNI | TACGTA | 1 cut(s) | 3653 |
| BstUI | CGCG | 7 cut(s) | 207, 246, 309, 425, 4028, 4092, 5831 |
| BstV2I | GAAGAC | 1 cut(s) | 992 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3228 |
| BstZ17I | GTATAC | 2 cut(s) | 1514, 1925 |
| BstZI | CGGCCG | 2 cut(s) | 183, 310 |
| Bsu15I | ATCGAT | 1 cut(s) | 81 |
| Bsu36I | CCTNAGG | 3 cut(s) | 4041, 6027, 6482 |
| BsuI | GTATCC | 3 cut(s) | 4744, 4814, 6097 |
| BsuTUI | ATCGAT | 1 cut(s) | 81 |
| BtgI | CCRYGG | 6 cut(s) | 244, 1090, 2332, 2862, 3537, 4060 |
| BtgZI | GCGATG | 1 cut(s) | 2088 |
| BtrI | CACGTC | 2 cut(s) | 136, 460 |
| BtsI | GCAGTG | 1 cut(s) | 2657 |
| BveI | ACCTGC | 4 cut(s) | 302, 1918, 4434, 4858 |
| CaiI | CAGNNNCTG | 4 cut(s) | 647, 1151, 3142, 5690 |
| CciI | TCATGA | 3 cut(s) | 1267, 1486, 5383 |
| CciNI | GCGGCCGC | 1 cut(s) | 310 |
| CfoI | GCGC | 6 cut(s) | 221, 299, 309, 2328, 3136, 4496 |
| Cfr42I | CCGCGG | 1 cut(s) | 247 |
| ClaI | ATCGAT | 1 cut(s) | 81 |
| CseI | GACGC | 7 cut(s) | 50, 414, 461, 4017, 4034, 4065, 6257 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3856, 3891 |
| DraI | TTTAAA | 3 cut(s) | 826, 2460, 3345 |
| DraIII | CACNNNGTG | 1 cut(s) | 256 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 338 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 338 |
| EaeI | YGGCCR | 7 cut(s) | 183, 310, 383, 462, 1286, 2822, 6235 |
| EagI | CGGCCG | 2 cut(s) | 183, 310 |
| Eam1104I | CTCTTC | 7 cut(s) | 952, 1090, 2160, 4128, 4311, 5763, 5877 |
| EarI | CTCTTC | 7 cut(s) | 952, 1090, 2160, 4128, 4311, 5763, 5877 |
| EciI | GGCGGA | 3 cut(s) | 156, 1102, 3615 |
| EclXI | CGGCCG | 2 cut(s) | 183, 310 |
| Eco105I | TACGTA | 1 cut(s) | 3653 |
| Eco24I | GRGCYC | 1 cut(s) | 6633 |
| Eco31I | GGTCTC | 2 cut(s) | 5094, 6196 |
| Eco32I | GATATC | 4 cut(s) | 418, 3835, 5518, 6182 |
| Eco52I | CGGCCG | 2 cut(s) | 183, 310 |
| Eco57I | CTGAAG | 6 cut(s) | 779, 2610, 3544, 4202, 4767, 6366 |
| Eco72I | CACGTG | 1 cut(s) | 253 |
| Eco81I | CCTNAGG | 3 cut(s) | 4041, 6027, 6482 |
| Eco88I | CYCGRG | 5 cut(s) | 74, 236, 1985, 3286, 4497 |
| Eco91I | GGTNACC | 1 cut(s) | 2870 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4955 |
| EcoO109I | RGGNCCY | 4 cut(s) | 1257, 3290, 3528, 5631 |
| EcoO65I | GGTNACC | 1 cut(s) | 2870 |
| EcoRI | GAATTC | 3 cut(s) | 3493, 4151, 5116 |
| EcoRII | CCWGG | 5 cut(s) | 315, 2044, 2442, 2531, 5026 |
| EcoRV | GATATC | 4 cut(s) | 418, 3835, 5518, 6182 |
| EcoT22I | ATGCAT | 3 cut(s) | 1175, 2551, 4635 |
| EcoT38I | GRGCYC | 1 cut(s) | 6633 |
| Esp3I | CGTCTC | 1 cut(s) | 3689 |
| FaqI | GGGAC | 6 cut(s) | 53, 3303, 3514, 3531, 4401, 6236 |
| FauI | CCCGC | 3 cut(s) | 356, 2739, 2965 |
| FauNDI | CATATG | 2 cut(s) | 2559, 5872 |
| FbaI | TGATCA | 3 cut(s) | 1474, 2236, 3667 |
| FblI | GTMKAC | 3 cut(s) | 1513, 1924, 5605 |
| FriOI | GRGCYC | 1 cut(s) | 6633 |
| GlaI | GCGC | 6 cut(s) | 220, 298, 308, 2327, 3135, 4495 |
| GsaI | CCCAGC | 4 cut(s) | 2151, 3479, 3536, 6636 |
| GsuI | CTGGAG | 8 cut(s) | 93, 519, 821, 2748, 2985, 4584, 5495, 6476 |
| HaeII | RGCGCY | 2 cut(s) | 2329, 4497 |
| HgaI | GACGC | 7 cut(s) | 50, 414, 461, 4017, 4034, 4065, 6257 |
| HhaI | GCGC | 6 cut(s) | 221, 299, 309, 2328, 3136, 4496 |
| Hin1I | GRCGYC | 2 cut(s) | 42, 4057 |
| Hin6I | GCGC | 6 cut(s) | 219, 297, 307, 2326, 3134, 4494 |
| HinP1I | GCGC | 6 cut(s) | 219, 297, 307, 2326, 3134, 4494 |
| HincII | GTYRAC | 2 cut(s) | 924, 4597 |
| HindII | GTYRAC | 2 cut(s) | 924, 4597 |
| HindIII | AAGCTT | 5 cut(s) | 588, 2454, 3204, 3612, 6351 |
| HpyCH4IV | ACGT | 9 cut(s) | 135, 252, 459, 1493, 2467, 3652, 3698, 4815, 4840 |
| HpySE526I | ACGT | 9 cut(s) | 135, 252, 459, 1493, 2467, 3652, 3698, 4815, 4840 |
| Hsp92I | GRCGYC | 2 cut(s) | 42, 4057 |
| HspAI | GCGC | 6 cut(s) | 219, 297, 307, 2326, 3134, 4494 |
| KflI | GGGWCCC | 1 cut(s) | 3528 |
| Kpn2I | TCCGGA | 1 cut(s) | 563 |
| Ksp22I | TGATCA | 3 cut(s) | 1474, 2236, 3667 |
| KspI | CCGCGG | 1 cut(s) | 247 |
| LmnI | GCTCC | 8 cut(s) | 47, 538, 874, 2035, 2570, 4821, 5897, 6628 |
| MaeII | ACGT | 9 cut(s) | 135, 252, 459, 1493, 2467, 3652, 3698, 4815, 4840 |
| MbiI | CCGCTC | 1 cut(s) | 388 |
| MfeI | CAATTG | 4 cut(s) | 1616, 4254, 6222, 6447 |
| MhlI | GDGCHC | 8 cut(s) | 535, 871, 1403, 2053, 2450, 2673, 3321, 6633 |
| MlsI | TGGCCA | 3 cut(s) | 1288, 2824, 6237 |
| MluI | ACGCGT | 3 cut(s) | 423, 4026, 4090 |
| MluNI | TGGCCA | 3 cut(s) | 1288, 2824, 6237 |
| MmeI | TCCRAC | 7 cut(s) | 1869, 2095, 3753, 4473, 4836, 5484, 6259 |
| Mox20I | TGGCCA | 3 cut(s) | 1288, 2824, 6237 |
| Mph1103I | ATGCAT | 3 cut(s) | 1175, 2551, 4635 |
| MroI | TCCGGA | 1 cut(s) | 563 |
| MroXI | GAANNNNTTC | 4 cut(s) | 753, 1393, 4990, 6286 |
| MscI | TGGCCA | 3 cut(s) | 1288, 2824, 6237 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1191, 2558, 3226, 4161, 4428, 5066, 5667 |
| Msp20I | TGGCCA | 3 cut(s) | 1288, 2824, 6237 |
| MspA1I | CMGCKG | 7 cut(s) | 246, 689, 2588, 3587, 4214, 6137, 6518 |
| MunI | CAATTG | 4 cut(s) | 1616, 4254, 6222, 6447 |
| Mva1269I | GAATGC | 3 cut(s) | 309, 2549, 4633 |
| MvaI | CCWGG | 5 cut(s) | 317, 2046, 2444, 2533, 5028 |
| MvnI | CGCG | 7 cut(s) | 207, 246, 309, 425, 4028, 4092, 5831 |
| NciI | CCSGG | 7 cut(s) | 38, 174, 182, 195, 498, 1684, 4419 |
| NcoI | CCATGG | 4 cut(s) | 1090, 2332, 2862, 3537 |
| NdeI | CATATG | 2 cut(s) | 2559, 5872 |
| NmeAIII | GCCGAG | 4 cut(s) | 459, 490, 3526, 5402 |
| NmuCI | GTSAC | 7 cut(s) | 538, 2294, 4073, 4104, 4845, 4911, 5902 |
| NotI | GCGGCCGC | 1 cut(s) | 310 |
| NsiI | ATGCAT | 3 cut(s) | 1175, 2551, 4635 |
| NspI | RCATGY | 4 cut(s) | 611, 1820, 4433, 5683 |
| OliI | CACNNNNGTG | 1 cut(s) | 1191 |
| PaeR7I | CTCGAG | 1 cut(s) | 1985 |
| PagI | TCATGA | 3 cut(s) | 1267, 1486, 5383 |
| PaqCI | CACCTGC | 2 cut(s) | 302, 4858 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 447 |
| PctI | GAATGC | 3 cut(s) | 309, 2549, 4633 |
| PdmI | GAANNNNTTC | 4 cut(s) | 753, 1393, 4990, 6286 |
| Pfl23II | CGTACG | 1 cut(s) | 1494 |
| PflFI | GACNNNGTC | 2 cut(s) | 32, 137 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1451 |
| PfoI | TCCNGGA | 2 cut(s) | 36, 193 |
| Ple19I | CGATCG | 1 cut(s) | 4280 |
| PmaCI | CACGTG | 1 cut(s) | 253 |
| PmlI | CACGTG | 1 cut(s) | 253 |
| Ppu21I | YACGTR | 4 cut(s) | 253, 1494, 2468, 3653 |
| PpuMI | RGGWCCY | 3 cut(s) | 3290, 3528, 5631 |
| PshBI | ATTAAT | 4 cut(s) | 2808, 3381, 5265, 6017 |
| PsiI | TTATAA | 1 cut(s) | 1853 |
| Psp5II | RGGWCCY | 3 cut(s) | 3290, 3528, 5631 |
| Psp6I | CCWGG | 5 cut(s) | 315, 2044, 2442, 2531, 5026 |
| PspCI | CACGTG | 1 cut(s) | 253 |
| PspEI | GGTNACC | 1 cut(s) | 2870 |
| PspFI | CCCAGC | 4 cut(s) | 2147, 3475, 3532, 6632 |
| PspGI | CCWGG | 5 cut(s) | 315, 2044, 2442, 2531, 5026 |
| PspLI | CGTACG | 1 cut(s) | 1494 |
| PspPPI | RGGWCCY | 3 cut(s) | 3290, 3528, 5631 |
| PspXI | VCTCGAGB | 1 cut(s) | 1985 |
| PstI | CTGCAG | 4 cut(s) | 5695, 6010, 6112, 6523 |
| PstNI | CAGNNNCTG | 4 cut(s) | 647, 1151, 3142, 5690 |
| PsyI | GACNNNGTC | 2 cut(s) | 32, 137 |
| PvuI | CGATCG | 1 cut(s) | 4280 |
| PvuII | CAGCTG | 6 cut(s) | 689, 2588, 3587, 4214, 6137, 6518 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1191, 2558, 3226, 4161, 4428, 5066, 5667 |
| SacII | CCGCGG | 1 cut(s) | 247 |
| SduI | GDGCHC | 8 cut(s) | 535, 871, 1403, 2053, 2450, 2673, 3321, 6633 |
| SfcI | CTRYAG | 9 cut(s) | 4287, 4554, 4938, 5217, 5691, 5730, 6006, 6108, 6519 |
| Sfr274I | CTCGAG | 1 cut(s) | 1985 |
| Sfr303I | CCGCGG | 1 cut(s) | 247 |
| SgrBI | CCGCGG | 1 cut(s) | 247 |
| SlaI | CTCGAG | 1 cut(s) | 1985 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1191, 2558, 3226, 4161, 4428, 5066, 5667 |
| SmlI | CTYRAG | 9 cut(s) | 1985, 2269, 2375, 2876, 3574, 4304, 4883, 5654, 6308 |
| SmoI | CTYRAG | 9 cut(s) | 1985, 2269, 2375, 2876, 3574, 4304, 4883, 5654, 6308 |
| SnaBI | TACGTA | 1 cut(s) | 3653 |
| SpeI | ACTAGT | 1 cut(s) | 2894 |
| SspI | AATATT | 1 cut(s) | 5328 |
| TaiI | ACGT | 9 cut(s) | 138, 255, 462, 1496, 2470, 3655, 3701, 4818, 4843 |
| TaqII | GACCGA | 2 cut(s) | 4510, 6488 |
| TatI | WGTACW | 4 cut(s) | 558, 4664, 5007, 5568 |
| TseFI | GTSAC | 7 cut(s) | 538, 2294, 4073, 4104, 4845, 4911, 5902 |
| Tsp45I | GTSAC | 7 cut(s) | 538, 2294, 4073, 4104, 4845, 4911, 5902 |
| TspGWI | ACGGA | 9 cut(s) | 1512, 1801, 2851, 3388, 3419, 3608, 4092, 4769, 5110 |
| Tth111I | GACNNNGTC | 2 cut(s) | 32, 137 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1451 |
| VspI | ATTAAT | 4 cut(s) | 2808, 3381, 5265, 6017 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4955 |
| XbaI | TCTAGA | 2 cut(s) | 4310, 6299 |
| XceI | RCATGY | 4 cut(s) | 611, 1820, 4433, 5683 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 409, 3978 |
| XhoI | CTCGAG | 1 cut(s) | 1985 |
| XmiI | GTMKAC | 3 cut(s) | 1513, 1924, 5605 |
| XmnI | GAANNNNTTC | 4 cut(s) | 753, 1393, 4990, 6286 |
| Zsp2I | ATGCAT | 3 cut(s) | 1175, 2551, 4635 |