methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01460 |
| fragaria_vesca | FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 |
| malus_domestica | MD09G1035200.v1.1 MD17G1035500.v1.1 |
| prunus_persica | Prupe.3G283100_v2.0.a1 |
| pyrus_communis | pycom111g02810 pycom17g03270 |
| rosa_chinensis | RchiOBHm_Chr2g0171081 |
| rosa_laevigata | RLG00000022001 |
| rosa_multiflora | Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080830 |
| rosa_rugosa | Rorug02G0553500 Rorug02G0553600 |
| rosa_samantha | Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100 |
| rosa_wichuraiana | Rw2G051900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1550 |
| AarI | CACCTGC | 1 cut(s) | 4558 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 35 |
| Acc36I | ACCTGC | 3 cut(s) | 1615, 4131, 4558 |
| AccB1I | GGYRCC | 2 cut(s) | 1745, 2144 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1148 |
| AccBSI | CCGCTC | 1 cut(s) | 85 |
| AccI | GTMKAC | 3 cut(s) | 1210, 1621, 5305 |
| AccII | CGCG | 5 cut(s) | 6, 122, 3725, 3789, 5531 |
| AccIII | TCCGGA | 1 cut(s) | 260 |
| AcoI | YGGCCR | 6 cut(s) | 7, 80, 159, 983, 2519, 5935 |
| AcuI | CTGAAG | 5 cut(s) | 476, 2307, 3241, 3899, 6066 |
| AcyI | GRCGYC | 1 cut(s) | 3754 |
| AdeI | CACNNNGTG | 1 cut(s) | 1151 |
| AflIII | ACRYGT | 4 cut(s) | 120, 1188, 3723, 3787 |
| AhlI | ACTAGT | 1 cut(s) | 2591 |
| AjiI | CACGTC | 1 cut(s) | 157 |
| AjnI | CCWGG | 4 cut(s) | 12, 1741, 2139, 4726 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 5736, 5768 |
| AleI | CACNNNNGTG | 1 cut(s) | 888 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1009, 1041, 5064, 5096 |
| Alw21I | GWGCWC | 6 cut(s) | 232, 568, 1100, 1967, 2370, 3018 |
| Alw26I | GTCTC | 5 cut(s) | 335, 3386, 4471, 4794, 5896 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 344, 848, 2839, 5390 |
| Ama87I | CYCGRG | 4 cut(s) | 1682, 1966, 4194, 5908 |
| Aor13HI | TCCGGA | 1 cut(s) | 260 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3434, 3466 |
| AseI | ATTAAT | 4 cut(s) | 2505, 3078, 4965, 5717 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 450, 1090, 4690, 5986 |
| AspLEI | GCGC | 4 cut(s) | 6, 2025, 2833, 4193 |
| AsuC2I | CCSGG | 3 cut(s) | 195, 1381, 4116 |
| AvaI | CYCGRG | 4 cut(s) | 1682, 1966, 4194, 5908 |
| AvaII | GGWCC | 9 cut(s) | 791, 1067, 2987, 3225, 3442, 4143, 5189, 5331, 5950 |
| AxyI | CCTNAGG | 4 cut(s) | 2983, 3738, 5727, 6182 |
| BaeGI | GKGCMC | 2 cut(s) | 1750, 2147 |
| BalI | TGGCCA | 3 cut(s) | 985, 2521, 5937 |
| BamHI | GGATCC | 4 cut(s) | 1971, 2914, 3287, 3663 |
| BanI | GGYRCC | 2 cut(s) | 1745, 2144 |
| BanII | GRGCYC | 1 cut(s) | 6333 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 6024, 6056 |
| BbsI | GAAGAC | 1 cut(s) | 689 |
| Bbv12I | GWGCWC | 6 cut(s) | 232, 568, 1100, 1967, 2370, 3018 |
| BbvCI | CCTCAGC | 1 cut(s) | 1914 |
| BceAI | ACGGC | 5 cut(s) | 154, 160, 3741, 3896, 4360 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 1297, 1331, 2751, 2785, 4286, 4320, 6133, 6167 |
| BciT130I | CCWGG | 4 cut(s) | 14, 1743, 2141, 4728 |
| BciVI | GTATCC | 3 cut(s) | 4444, 4514, 5797 |
| BclI | TGATCA | 3 cut(s) | 1171, 1933, 3364 |
| BcnI | CCSGG | 3 cut(s) | 195, 1381, 4116 |
| BcoDI | GTCTC | 5 cut(s) | 335, 3386, 4471, 4794, 5896 |
| BcuI | ACTAGT | 1 cut(s) | 2591 |
| BfmI | CTRYAG | 9 cut(s) | 3984, 4251, 4638, 4917, 5391, 5430, 5706, 5808, 6219 |
| BfoI | RGCGCY | 2 cut(s) | 2026, 4194 |
| BfuAI | ACCTGC | 3 cut(s) | 1615, 4131, 4558 |
| BfuI | GTATCC | 3 cut(s) | 4444, 4514, 5797 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 57, 1910 |
| BglII | AGATCT | 2 cut(s) | 2110, 5586 |
| BlpI | GCTNAGC | 1 cut(s) | 5769 |
| Bme1390I | CCNGG | 7 cut(s) | 14, 195, 1381, 1743, 2141, 4116, 4728 |
| Bme18I | GGWCC | 9 cut(s) | 791, 1067, 2987, 3225, 3442, 4143, 5189, 5331, 5950 |
| BmeT110I | CYCGRG | 4 cut(s) | 1682, 1966, 4194, 5908 |
| BmgBI | CACGTC | 1 cut(s) | 157 |
| BmrFI | CCNGG | 7 cut(s) | 14, 195, 1381, 1743, 2141, 4116, 4728 |
| BmrI | ACTGGG | 5 cut(s) | 896, 1110, 1744, 4720, 5950 |
| BmuI | ACTGGG | 5 cut(s) | 896, 1110, 1744, 4720, 5950 |
| BpiI | GAAGAC | 1 cut(s) | 689 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1960, 1992, 4577, 4609, 5576, 5608 |
| BpmI | CTGGAG | 7 cut(s) | 216, 518, 2445, 2682, 4281, 5195, 6176 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1914 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 5769 |
| BpuEI | CTTGAG | 7 cut(s) | 2093, 2594, 3292, 3986, 4604, 5375, 5993 |
| BpuMI | CCSGG | 3 cut(s) | 195, 1381, 4116 |
| BsaAI | YACGTR | 3 cut(s) | 1191, 2165, 3350 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2913, 3080, 3979 |
| BsaHI | GRCGYC | 1 cut(s) | 3754 |
| BsaI | GGTCTC | 2 cut(s) | 4794, 5896 |
| BsaWI | WCCGGW | 2 cut(s) | 260, 2264 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1477, 1507, 4556, 4586 |
| Bse21I | CCTNAGG | 4 cut(s) | 2983, 3738, 5727, 6182 |
| Bse3DI | GCAATG | 4 cut(s) | 326, 2277, 2983, 5311 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2913, 3080, 3979 |
| BseAI | TCCGGA | 1 cut(s) | 260 |
| BseBI | CCWGG | 4 cut(s) | 14, 1743, 2141, 4728 |
| BseJI | GATNNNNATC | 3 cut(s) | 2913, 3080, 3979 |
| BseMI | GCAATG | 4 cut(s) | 326, 2277, 2983, 5311 |
| BseRI | GAGGAG | 4 cut(s) | 1935, 3440, 3642, 5715 |
| BseSI | GKGCMC | 2 cut(s) | 1750, 2147 |
| BseX3I | CGGCCG | 1 cut(s) | 7 |
| BseYI | CCCAGC | 4 cut(s) | 1844, 3172, 3229, 6332 |
| BsgI | GTGCAG | 4 cut(s) | 926, 1965, 2382, 4790 |
| Bsh1236I | CGCG | 5 cut(s) | 6, 122, 3725, 3789, 5531 |
| Bsh1285I | CGRYCG | 2 cut(s) | 10, 3977 |
| BshNI | GGYRCC | 2 cut(s) | 1745, 2144 |
| BsiEI | CGRYCG | 2 cut(s) | 10, 3977 |
| BsiHKAI | GWGCWC | 6 cut(s) | 232, 568, 1100, 1967, 2370, 3018 |
| BsiHKCI | CYCGRG | 4 cut(s) | 1682, 1966, 4194, 5908 |
| BsiSI | CCGG | 7 cut(s) | 195, 261, 627, 1380, 2265, 2325, 4116 |
| BsiWI | CGTACG | 1 cut(s) | 1191 |
| BslFI | GGGAC | 5 cut(s) | 3211, 3228, 4098, 4875, 5936 |
| BsmAI | GTCTC | 5 cut(s) | 335, 3386, 4471, 4794, 5896 |
| BsmBI | CGTCTC | 1 cut(s) | 3386 |
| BsmFI | GGGAC | 5 cut(s) | 3211, 3228, 4098, 4875, 5936 |
| BsmI | GAATGC | 2 cut(s) | 2246, 4333 |
| Bso31I | GGTCTC | 2 cut(s) | 4794, 5896 |
| BsoBI | CYCGRG | 4 cut(s) | 1682, 1966, 4194, 5908 |
| Bsp1286I | GDGCHC | 9 cut(s) | 232, 568, 1100, 1750, 1967, 2147, 2370, 3018, 6333 |
| Bsp13I | TCCGGA | 1 cut(s) | 260 |
| Bsp1407I | TGTACA | 1 cut(s) | 5268 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 5769 |
| Bsp19I | CCATGG | 4 cut(s) | 787, 2029, 2559, 3234 |
| BspEI | TCCGGA | 1 cut(s) | 260 |
| BspFNI | CGCG | 5 cut(s) | 6, 122, 3725, 3789, 5531 |
| BspHI | TCATGA | 3 cut(s) | 964, 1183, 5083 |
| BspMAI | CTGCAG | 4 cut(s) | 5395, 5710, 5812, 6223 |
| BspMI | ACCTGC | 3 cut(s) | 1615, 4131, 4558 |
| BspT107I | GGYRCC | 2 cut(s) | 1745, 2144 |
| BspTNI | GGTCTC | 2 cut(s) | 4794, 5896 |
| BsrBI | CCGCTC | 1 cut(s) | 85 |
| BsrDI | GCAATG | 4 cut(s) | 326, 2277, 2983, 5311 |
| BsrGI | TGTACA | 1 cut(s) | 5268 |
| BssNAI | GTATAC | 2 cut(s) | 1211, 1622 |
| BssNI | GRCGYC | 1 cut(s) | 3754 |
| Bst1107I | GTATAC | 2 cut(s) | 1211, 1622 |
| Bst2UI | CCWGG | 4 cut(s) | 14, 1743, 2141, 4728 |
| Bst6I | CTCTTC | 7 cut(s) | 649, 787, 1857, 3825, 4008, 5463, 5577 |
| BstACI | GRCGYC | 1 cut(s) | 3754 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 493, 3970 |
| BstAUI | TGTACA | 1 cut(s) | 5268 |
| BstBAI | YACGTR | 3 cut(s) | 1191, 2165, 3350 |
| BstDSI | CCRYGG | 5 cut(s) | 787, 2029, 2559, 3234, 3757 |
| BstEII | GGTNACC | 1 cut(s) | 2567 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 4655 |
| BstFNI | CGCG | 5 cut(s) | 6, 122, 3725, 3789, 5531 |
| BstH2I | RGCGCY | 2 cut(s) | 2026, 4194 |
| BstHHI | GCGC | 4 cut(s) | 6, 2025, 2833, 4193 |
| BstMAI | GTCTC | 5 cut(s) | 335, 3386, 4471, 4794, 5896 |
| BstMCI | CGRYCG | 2 cut(s) | 10, 3977 |
| BstNI | CCWGG | 4 cut(s) | 14, 1743, 2141, 4728 |
| BstNSI | RCATGY | 4 cut(s) | 308, 1517, 4130, 5383 |
| BstPI | GGTNACC | 1 cut(s) | 2567 |
| BstSCI | CCNGG | 7 cut(s) | 12, 193, 1379, 1741, 2139, 4114, 4726 |
| BstSFI | CTRYAG | 9 cut(s) | 3984, 4251, 4638, 4917, 5391, 5430, 5706, 5808, 6219 |
| BstSLI | GKGCMC | 2 cut(s) | 1750, 2147 |
| BstSNI | TACGTA | 1 cut(s) | 3350 |
| BstUI | CGCG | 5 cut(s) | 6, 122, 3725, 3789, 5531 |
| BstV2I | GAAGAC | 1 cut(s) | 689 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2925 |
| BstZ17I | GTATAC | 2 cut(s) | 1211, 1622 |
| BstZI | CGGCCG | 1 cut(s) | 7 |
| Bsu36I | CCTNAGG | 4 cut(s) | 2983, 3738, 5727, 6182 |
| BsuI | GTATCC | 3 cut(s) | 4444, 4514, 5797 |
| BtgI | CCRYGG | 5 cut(s) | 787, 2029, 2559, 3234, 3757 |
| BtgZI | GCGATG | 1 cut(s) | 1785 |
| BtrI | CACGTC | 1 cut(s) | 157 |
| BtsI | GCAGTG | 1 cut(s) | 2354 |
| BveI | ACCTGC | 3 cut(s) | 1615, 4131, 4558 |
| CaiI | CAGNNNCTG | 4 cut(s) | 344, 848, 2839, 5390 |
| CciI | TCATGA | 3 cut(s) | 964, 1183, 5083 |
| CciNI | GCGGCCGC | 1 cut(s) | 7 |
| CfoI | GCGC | 4 cut(s) | 6, 2025, 2833, 4193 |
| CseI | GACGC | 6 cut(s) | 111, 158, 3714, 3731, 3762, 5957 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3553, 3588 |
| DraI | TTTAAA | 3 cut(s) | 523, 2157, 3042 |
| DraIII | CACNNNGTG | 1 cut(s) | 1151 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 35 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 35 |
| EaeI | YGGCCR | 6 cut(s) | 7, 80, 159, 983, 2519, 5935 |
| EagI | CGGCCG | 1 cut(s) | 7 |
| Eam1104I | CTCTTC | 7 cut(s) | 649, 787, 1857, 3825, 4008, 5463, 5577 |
| EarI | CTCTTC | 7 cut(s) | 649, 787, 1857, 3825, 4008, 5463, 5577 |
| EciI | GGCGGA | 2 cut(s) | 799, 3312 |
| EclXI | CGGCCG | 1 cut(s) | 7 |
| Eco105I | TACGTA | 1 cut(s) | 3350 |
| Eco24I | GRGCYC | 1 cut(s) | 6333 |
| Eco31I | GGTCTC | 2 cut(s) | 4794, 5896 |
| Eco32I | GATATC | 4 cut(s) | 115, 3532, 5218, 5882 |
| Eco47I | GGWCC | 9 cut(s) | 791, 1067, 2987, 3225, 3442, 4143, 5189, 5331, 5950 |
| Eco52I | CGGCCG | 1 cut(s) | 7 |
| Eco57I | CTGAAG | 5 cut(s) | 476, 2307, 3241, 3899, 6066 |
| Eco81I | CCTNAGG | 4 cut(s) | 2983, 3738, 5727, 6182 |
| Eco88I | CYCGRG | 4 cut(s) | 1682, 1966, 4194, 5908 |
| Eco91I | GGTNACC | 1 cut(s) | 2567 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 4655 |
| EcoO109I | RGGNCCY | 4 cut(s) | 954, 2987, 3225, 5331 |
| EcoO65I | GGTNACC | 1 cut(s) | 2567 |
| EcoRI | GAATTC | 3 cut(s) | 3190, 3848, 4816 |
| EcoRII | CCWGG | 4 cut(s) | 12, 1741, 2139, 4726 |
| EcoRV | GATATC | 4 cut(s) | 115, 3532, 5218, 5882 |
| EcoT22I | ATGCAT | 3 cut(s) | 872, 2248, 4335 |
| EcoT38I | GRGCYC | 1 cut(s) | 6333 |
| Esp3I | CGTCTC | 1 cut(s) | 3386 |
| FaqI | GGGAC | 5 cut(s) | 3211, 3228, 4098, 4875, 5936 |
| FauI | CCCGC | 3 cut(s) | 53, 2436, 2662 |
| FauNDI | CATATG | 3 cut(s) | 2256, 4329, 5572 |
| FbaI | TGATCA | 3 cut(s) | 1171, 1933, 3364 |
| FblI | GTMKAC | 3 cut(s) | 1210, 1621, 5305 |
| FriOI | GRGCYC | 1 cut(s) | 6333 |
| GlaI | GCGC | 4 cut(s) | 5, 2024, 2832, 4192 |
| GsaI | CCCAGC | 4 cut(s) | 1848, 3176, 3233, 6336 |
| GsuI | CTGGAG | 7 cut(s) | 216, 518, 2445, 2682, 4281, 5195, 6176 |
| HaeII | RGCGCY | 2 cut(s) | 2026, 4194 |
| HapII | CCGG | 7 cut(s) | 195, 261, 627, 1380, 2265, 2325, 4116 |
| HgaI | GACGC | 6 cut(s) | 111, 158, 3714, 3731, 3762, 5957 |
| HhaI | GCGC | 4 cut(s) | 6, 2025, 2833, 4193 |
| Hin1I | GRCGYC | 1 cut(s) | 3754 |
| Hin6I | GCGC | 4 cut(s) | 4, 2023, 2831, 4191 |
| HinP1I | GCGC | 4 cut(s) | 4, 2023, 2831, 4191 |
| HincII | GTYRAC | 2 cut(s) | 621, 4294 |
| HindII | GTYRAC | 2 cut(s) | 621, 4294 |
| HindIII | AAGCTT | 5 cut(s) | 285, 2151, 2901, 3309, 6051 |
| HpaII | CCGG | 7 cut(s) | 195, 261, 627, 1380, 2265, 2325, 4116 |
| Hpy99I | CGWCG | 6 cut(s) | 127, 140, 146, 152, 3132, 3756 |
| HpyCH4IV | ACGT | 6 cut(s) | 156, 1190, 2164, 3349, 3395, 4540 |
| HpySE526I | ACGT | 6 cut(s) | 156, 1190, 2164, 3349, 3395, 4540 |
| Hsp92I | GRCGYC | 1 cut(s) | 3754 |
| HspAI | GCGC | 4 cut(s) | 4, 2023, 2831, 4191 |
| KflI | GGGWCCC | 1 cut(s) | 3225 |
| Kpn2I | TCCGGA | 1 cut(s) | 260 |
| Ksp22I | TGATCA | 3 cut(s) | 1171, 1933, 3364 |
| LmnI | GCTCC | 7 cut(s) | 235, 571, 1732, 2267, 4521, 5597, 6328 |
| MaeII | ACGT | 6 cut(s) | 156, 1190, 2164, 3349, 3395, 4540 |
| MbiI | CCGCTC | 1 cut(s) | 85 |
| MfeI | CAATTG | 4 cut(s) | 1313, 3951, 5922, 6147 |
| MhlI | GDGCHC | 9 cut(s) | 232, 568, 1100, 1750, 1967, 2147, 2370, 3018, 6333 |
| MlsI | TGGCCA | 3 cut(s) | 985, 2521, 5937 |
| MluI | ACGCGT | 3 cut(s) | 120, 3723, 3787 |
| MluNI | TGGCCA | 3 cut(s) | 985, 2521, 5937 |
| MmeI | TCCRAC | 7 cut(s) | 1566, 1792, 2751, 3450, 4170, 5184, 5959 |
| Mox20I | TGGCCA | 3 cut(s) | 985, 2521, 5937 |
| Mph1103I | ATGCAT | 3 cut(s) | 872, 2248, 4335 |
| MroI | TCCGGA | 1 cut(s) | 260 |
| MroXI | GAANNNNTTC | 4 cut(s) | 450, 1090, 4690, 5986 |
| MscI | TGGCCA | 3 cut(s) | 985, 2521, 5937 |
| MslI | CAYNNNNRTG | 7 cut(s) | 888, 2255, 2923, 3858, 4125, 4766, 5367 |
| Msp20I | TGGCCA | 3 cut(s) | 985, 2521, 5937 |
| MspA1I | CMGCKG | 5 cut(s) | 386, 2285, 3284, 5837, 6218 |
| MspI | CCGG | 7 cut(s) | 195, 261, 627, 1380, 2265, 2325, 4116 |
| MspR9I | CCNGG | 7 cut(s) | 14, 195, 1381, 1743, 2141, 4116, 4728 |
| MunI | CAATTG | 4 cut(s) | 1313, 3951, 5922, 6147 |
| Mva1269I | GAATGC | 2 cut(s) | 2246, 4333 |
| MvaI | CCWGG | 4 cut(s) | 14, 1743, 2141, 4728 |
| MvnI | CGCG | 5 cut(s) | 6, 122, 3725, 3789, 5531 |
| NciI | CCSGG | 3 cut(s) | 195, 1381, 4116 |
| NcoI | CCATGG | 4 cut(s) | 787, 2029, 2559, 3234 |
| NdeI | CATATG | 3 cut(s) | 2256, 4329, 5572 |
| NmeAIII | GCCGAG | 4 cut(s) | 156, 187, 3223, 5102 |
| NmuCI | GTSAC | 7 cut(s) | 235, 1991, 3770, 3801, 4545, 4611, 5602 |
| NotI | GCGGCCGC | 1 cut(s) | 7 |
| NsiI | ATGCAT | 3 cut(s) | 872, 2248, 4335 |
| NspI | RCATGY | 4 cut(s) | 308, 1517, 4130, 5383 |
| OliI | CACNNNNGTG | 1 cut(s) | 888 |
| PaeR7I | CTCGAG | 2 cut(s) | 1682, 1966 |
| PagI | TCATGA | 3 cut(s) | 964, 1183, 5083 |
| PaqCI | CACCTGC | 1 cut(s) | 4558 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 144 |
| PctI | GAATGC | 2 cut(s) | 2246, 4333 |
| PdmI | GAANNNNTTC | 4 cut(s) | 450, 1090, 4690, 5986 |
| Pfl23II | CGTACG | 1 cut(s) | 1191 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1148 |
| Ple19I | CGATCG | 1 cut(s) | 3977 |
| Ppu21I | YACGTR | 3 cut(s) | 1191, 2165, 3350 |
| PpuMI | RGGWCCY | 3 cut(s) | 2987, 3225, 5331 |
| PshBI | ATTAAT | 4 cut(s) | 2505, 3078, 4965, 5717 |
| PsiI | TTATAA | 1 cut(s) | 1550 |
| Psp5II | RGGWCCY | 3 cut(s) | 2987, 3225, 5331 |
| Psp6I | CCWGG | 4 cut(s) | 12, 1741, 2139, 4726 |
| PspEI | GGTNACC | 1 cut(s) | 2567 |
| PspFI | CCCAGC | 4 cut(s) | 1844, 3172, 3229, 6332 |
| PspGI | CCWGG | 4 cut(s) | 12, 1741, 2139, 4726 |
| PspLI | CGTACG | 1 cut(s) | 1191 |
| PspPPI | RGGWCCY | 3 cut(s) | 2987, 3225, 5331 |
| PspXI | VCTCGAGB | 2 cut(s) | 1682, 1966 |
| PstI | CTGCAG | 4 cut(s) | 5395, 5710, 5812, 6223 |
| PstNI | CAGNNNCTG | 4 cut(s) | 344, 848, 2839, 5390 |
| PvuI | CGATCG | 1 cut(s) | 3977 |
| PvuII | CAGCTG | 5 cut(s) | 386, 2285, 3284, 5837, 6218 |
| RseI | CAYNNNNRTG | 7 cut(s) | 888, 2255, 2923, 3858, 4125, 4766, 5367 |
| ScrFI | CCNGG | 7 cut(s) | 14, 195, 1381, 1743, 2141, 4116, 4728 |
| SduI | GDGCHC | 9 cut(s) | 232, 568, 1100, 1750, 1967, 2147, 2370, 3018, 6333 |
| SfcI | CTRYAG | 9 cut(s) | 3984, 4251, 4638, 4917, 5391, 5430, 5706, 5808, 6219 |
| Sfr274I | CTCGAG | 2 cut(s) | 1682, 1966 |
| SinI | GGWCC | 9 cut(s) | 791, 1067, 2987, 3225, 3442, 4143, 5189, 5331, 5950 |
| SlaI | CTCGAG | 2 cut(s) | 1682, 1966 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 888, 2255, 2923, 3858, 4125, 4766, 5367 |
| SmlI | CTYRAG | 9 cut(s) | 1682, 1966, 2072, 2573, 3271, 4001, 4583, 5354, 6008 |
| SmoI | CTYRAG | 9 cut(s) | 1682, 1966, 2072, 2573, 3271, 4001, 4583, 5354, 6008 |
| SnaBI | TACGTA | 1 cut(s) | 3350 |
| SpeI | ACTAGT | 1 cut(s) | 2591 |
| SspI | AATATT | 1 cut(s) | 5028 |
| StyD4I | CCNGG | 7 cut(s) | 12, 193, 1379, 1741, 2139, 4114, 4726 |
| TaiI | ACGT | 6 cut(s) | 159, 1193, 2167, 3352, 3398, 4543 |
| TaqI | TCGA | 8 cut(s) | 755, 1124, 1683, 1710, 1967, 2489, 3381, 6270 |
| TaqII | GACCGA | 2 cut(s) | 4207, 6188 |
| TatI | WGTACW | 4 cut(s) | 255, 4364, 4707, 5268 |
| TauI | GCSGC | 8 cut(s) | 9, 12, 45, 60, 85, 130, 3137, 3143 |
| TseFI | GTSAC | 7 cut(s) | 235, 1991, 3770, 3801, 4545, 4611, 5602 |
| Tsp45I | GTSAC | 7 cut(s) | 235, 1991, 3770, 3801, 4545, 4611, 5602 |
| TspGWI | ACGGA | 9 cut(s) | 1209, 1498, 2548, 3085, 3116, 3305, 3789, 4469, 4810 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1148 |
| VpaK11BI | GGWCC | 9 cut(s) | 791, 1067, 2987, 3225, 3442, 4143, 5189, 5331, 5950 |
| VspI | ATTAAT | 4 cut(s) | 2505, 3078, 4965, 5717 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 4655 |
| XbaI | TCTAGA | 2 cut(s) | 4007, 5999 |
| XceI | RCATGY | 4 cut(s) | 308, 1517, 4130, 5383 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 106, 3675 |
| XhoI | CTCGAG | 2 cut(s) | 1682, 1966 |
| XmiI | GTMKAC | 3 cut(s) | 1210, 1621, 5305 |
| XmnI | GAANNNNTTC | 4 cut(s) | 450, 1090, 4690, 5986 |
| Zsp2I | ATGCAT | 3 cut(s) | 872, 2248, 4335 |