Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327183.1

Orthogroup ID

OG0004967

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 770

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 661 bp

atgggggctgggttgcatggaaaagaagaggaagttttagatcgtttatttaggaggtctaaaaaagccaagttggctgaggttcatgttaagaatgatcatccacctcctcttgggaagccattgtgctcgaggatccctcctgcacttgttggtgacttgtatcaggtttgggaactactatggcgcttccatggtattttgggtctaaaggaggcattttcattgaaagaacttgaggatgaactcataaacccttggtttgccagctcagatctaccagagaagtatgagagtgaaatccagggcaccaaagctttaaaagcacgtaaagttgattgtagaagtggtctagttctatcatctagctctgagttcagttcggcagtttccagggataaccctcatgcattcatccatatggaaaccggagcaatgaaggaggcagctgaagctaaactcgcatctgttacctacaatagatgttccggcatagctttgacaaaggctcacgcctcactgctaaaagtgctcataggcgagttgcagtccaaggttgctgcactggtcgatccgaattttgattctggagagtccaaatcaaagcggggaaggaagaaagatattgactgttctattcctgtgaaaagatcgaagctac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain DDT FYRC MBD PHD WHIM1 WSD

Protein Analysis

220

Amino Acids

24.29

Weight (kDa)

9.08

Isoelectric Point (pI)

34.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01460
fragaria_vesca	FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560
malus_domestica	MD09G1035200.v1.1 MD17G1035500.v1.1
prunus_persica	Prupe.3G283100_v2.0.a1
pyrus_communis	pycom111g02810 pycom17g03270
rosa_chinensis	RchiOBHm_Chr2g0171081
rosa_laevigata	RLG00000022001
rosa_multiflora	Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080830
rosa_rugosa	Rorug02G0553500 Rorug02G0553600
rosa_samantha	Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100
rosa_wichuraiana	Rw2G051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	308
AciI	CCGC	1 cut(s)	607
AclWI	GGATC	3 cut(s)	130, 143, 566
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	1 cut(s)	471
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	2 cut(s)	303, 392
AluBI	AGCT	7 cut(s)	270, 317, 369, 449, 455, 497, 658
AluI	AGCT	7 cut(s)	270, 317, 369, 449, 455, 497, 658
Alw21I	GWGCWC	2 cut(s)	131, 534
AlwI	GGATC	3 cut(s)	130, 143, 566
Ama87I	CYCGRG	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	446, 560
ApoI	RAATTY	1 cut(s)	577
AspLEI	GCGC	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	311
BamHI	GGATCC	1 cut(s)	135
BanI	GGYRCC	1 cut(s)	308
Bbv12I	GWGCWC	2 cut(s)	131, 534
BbvCI	CCTCAGC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	458, 547
BciT130I	CCWGG	2 cut(s)	305, 394
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	2 cut(s)	353, 366
BfoI	RGCGCY	1 cut(s)	190
BglI	GCCNNNNNGGC	1 cut(s)	74
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	2 cut(s)	447, 561
BlsI	GCNGC	2 cut(s)	448, 562
Bme1390I	CCNGG	2 cut(s)	305, 394
BmeT110I	CYCGRG	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	137, 310
BmrFI	CCNGG	2 cut(s)	305, 394
BmsI	GCATC	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
BpmI	CTGGAG	1 cut(s)	609
Bpu10I	CCTNAGC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	5 cut(s)	193, 257, 304, 393, 552
BsaWI	WCCGGW	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	570
Bse3DI	GCAATG	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	305, 394
BseDI	CCNNGG	5 cut(s)	193, 257, 304, 393, 552
BseGI	GGATG	3 cut(s)	100, 247, 414
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	441
BseMII	CTCAG	3 cut(s)	69, 285, 363
BseNI	ACTGG	1 cut(s)	570
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	458, 547
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	2 cut(s)	129, 546
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	131, 534
BsiHKCI	CYCGRG	1 cut(s)	130
BsiSI	CCGG	2 cut(s)	429, 489
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	130
Bsp1286I	GDGCHC	3 cut(s)	131, 311, 534
Bsp143I	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
Bsp19I	CCATGG	1 cut(s)	193
BspACI	CCGC	1 cut(s)	607
BspCNI	CTCAG	3 cut(s)	70, 284, 364
BspLI	GGNNCC	2 cut(s)	137, 310
BspPI	GGATC	3 cut(s)	130, 143, 566
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	570
BssECI	CCNNGG	5 cut(s)	193, 257, 304, 393, 552
BssMI	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
BssT1I	CCWWGG	3 cut(s)	193, 257, 552
Bst2UI	CCWGG	2 cut(s)	305, 394
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	3 cut(s)	78, 271, 372
BstDSI	CCRYGG	1 cut(s)	193
BstF5I	GGATG	3 cut(s)	100, 247, 414
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	6 cut(s)	43, 100, 138, 277, 574, 653
BstMBI	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
BstMWI	GCNNNNNNNGC	5 cut(s)	74, 323, 452, 461, 529
BstNI	CCWGG	2 cut(s)	305, 394
BstSCI	CCNGG	2 cut(s)	303, 392
BstSLI	GKGCMC	1 cut(s)	311
BstV1I	GCAGC	2 cut(s)	458, 547
BstX2I	RGATCY	2 cut(s)	135, 274
BstYI	RGATCY	2 cut(s)	135, 274
BtgI	CCRYGG	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	100, 247, 414
BtsI	GCAGTG	1 cut(s)	518
BtsIMutI	CAGTG	2 cut(s)	518, 563
Cac8I	GCNNGC	1 cut(s)	268
CfoI	GCGC	1 cut(s)	189
CviAII	CATG	4 cut(s)	17, 86, 194, 407
DdeI	CTNAG	3 cut(s)	78, 271, 372
DpnI	GATC	6 cut(s)	42, 99, 137, 276, 573, 652
DpnII	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
DraI	TTTAAA	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	3 cut(s)	193, 257, 552
Eco57I	CTGAAG	1 cut(s)	471
Eco88I	CYCGRG	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	303, 392
EcoT14I	CCWWGG	3 cut(s)	193, 257, 552
EcoT22I	ATGCAT	1 cut(s)	412
ErhI	CCWWGG	3 cut(s)	193, 257, 552
FaeI	CATG	4 cut(s)	20, 89, 197, 410
FatI	CATG	4 cut(s)	16, 85, 193, 406
FauI	CCCGC	1 cut(s)	600
FauNDI	CATATG	1 cut(s)	420
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	447, 561
FokI	GGATG	3 cut(s)	87, 254, 401
Fsp4HI	GCNGC	2 cut(s)	447, 561
FspBI	CTAG	2 cut(s)	353, 366
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	2 cut(s)	447, 561
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	190
HapII	CCGG	2 cut(s)	429, 489
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	4 cut(s)	20, 89, 197, 410
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	315
HinfI	GANTC	2 cut(s)	584, 593
HpaII	CCGG	2 cut(s)	429, 489
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	3 cut(s)	274, 373, 576
Hpy188III	TCNNGA	1 cut(s)	588
HpyAV	CCTTC	2 cut(s)	433, 606
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	1 cut(s)	328
HpyCH4V	TGCA	5 cut(s)	16, 146, 410, 547, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	74, 323, 452, 461, 529
HpyF3I	CTNAG	3 cut(s)	78, 271, 372
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	4 cut(s)	20, 89, 197, 410
HspAI	GCGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	2 cut(s)	458, 547
LweI	GCATC	1 cut(s)	473
MaeI	CTAG	2 cut(s)	353, 366
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	2 cut(s)	155, 469
MalI	GATC	6 cut(s)	42, 99, 137, 276, 573, 652
MboI	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
MboII	GAAGA	2 cut(s)	38, 628
MflI	RGATCY	2 cut(s)	135, 274
MhlI	GDGCHC	3 cut(s)	131, 311, 534
MluCI	AATT	1 cut(s)	577
MlyI	GAGTC	1 cut(s)	602
Mph1103I	ATGCAT	1 cut(s)	412
MseI	TTAA	2 cut(s)	90, 320
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	1 cut(s)	449
MspI	CCGG	2 cut(s)	429, 489
MspR9I	CCNGG	2 cut(s)	305, 394
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	2 cut(s)	305, 394
MwoI	GCNNNNNNNGC	5 cut(s)	74, 323, 452, 461, 529
NcoI	CCATGG	1 cut(s)	193
NdeI	CATATG	1 cut(s)	420
NdeII	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
NlaIII	CATG	4 cut(s)	20, 89, 197, 410
NlaIV	GGNNCC	2 cut(s)	137, 310
NmuCI	GTSAC	1 cut(s)	155
NsiI	ATGCAT	1 cut(s)	412
PaeR7I	CTCGAG	1 cut(s)	130
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	584
PkrI	GCNGC	2 cut(s)	448, 562
PleI	GAGTC	1 cut(s)	601
PpsI	GAGTC	1 cut(s)	601
Ppu21I	YACGTR	1 cut(s)	329
Psp6I	CCWGG	2 cut(s)	303, 392
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	303, 392
PspN4I	GGNNCC	2 cut(s)	137, 310
PspXI	VCTCGAGB	1 cut(s)	130
PsuI	RGATCY	2 cut(s)	135, 274
PvuII	CAGCTG	1 cut(s)	449
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	90, 320
SatI	GCNGC	2 cut(s)	447, 561
Sau3AI	GATC	6 cut(s)	40, 97, 135, 274, 571, 650
SchI	GAGTC	1 cut(s)	602
ScrFI	CCNGG	2 cut(s)	305, 394
SduI	GDGCHC	3 cut(s)	131, 311, 534
SfaNI	GCATC	1 cut(s)	473
Sfr274I	CTCGAG	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	2 cut(s)	130, 236
SmoI	CTYRAG	2 cut(s)	130, 236
Sse9I	AATT	1 cut(s)	577
SsiI	CCGC	1 cut(s)	607
SspMI	CTAG	2 cut(s)	353, 366
StyD4I	CCNGG	2 cut(s)	303, 392
StyI	CCWWGG	3 cut(s)	193, 257, 552
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	3 cut(s)	131, 570, 653
TasI	AATT	1 cut(s)	577
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	2 cut(s)	90, 320
Tru9I	TTAA	2 cut(s)	90, 320
TscAI	CASTG	2 cut(s)	525, 570
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	2 cut(s)	446, 560
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	5 cut(s)	74, 213, 258, 403, 452
TspRI	CASTG	2 cut(s)	525, 570
XapI	RAATTY	1 cut(s)	577
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	2 cut(s)	353, 366
Zsp2I	ATGCAT	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.