methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01460 |
| fragaria_vesca | FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 |
| malus_domestica | MD09G1035200.v1.1 MD17G1035500.v1.1 |
| prunus_persica | Prupe.3G283100_v2.0.a1 |
| pyrus_communis | pycom111g02810 pycom17g03270 |
| rosa_chinensis | RchiOBHm_Chr2g0171081 |
| rosa_laevigata | RLG00000022001 |
| rosa_multiflora | Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080830 |
| rosa_rugosa | Rorug02G0553500 Rorug02G0553600 |
| rosa_samantha | Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100 |
| rosa_wichuraiana | Rw2G051900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 302 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 338 |
| Acc36I | ACCTGC | 1 cut(s) | 302 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 727 |
| AccBSI | CCGCTC | 1 cut(s) | 388 |
| AccI | GTMKAC | 1 cut(s) | 789 |
| AccII | CGCG | 4 cut(s) | 207, 246, 309, 425 |
| AclWI | GGATC | 4 cut(s) | 86, 91, 104, 547 |
| AcoI | YGGCCR | 4 cut(s) | 183, 310, 383, 462 |
| AcvI | CACGTG | 1 cut(s) | 253 |
| AcyI | GRCGYC | 1 cut(s) | 42 |
| AdeI | CACNNNGTG | 2 cut(s) | 256, 730 |
| AfaI | GTAC | 1 cut(s) | 772 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 62, 75, 173, 176, 200, 228, 440, 727 |
| AflIII | ACRYGT | 3 cut(s) | 250, 423, 767 |
| AgsI | TTSAA | 1 cut(s) | 602 |
| AjiI | CACGTC | 2 cut(s) | 136, 460 |
| AjnI | CCWGG | 1 cut(s) | 315 |
| AleI | CACNNNNGTG | 1 cut(s) | 576 |
| AluBI | AGCT | 2 cut(s) | 50, 536 |
| AluI | AGCT | 2 cut(s) | 50, 536 |
| Alw21I | GWGCWC | 1 cut(s) | 679 |
| AlwI | GGATC | 4 cut(s) | 86, 91, 104, 547 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 536 |
| Ama87I | CYCGRG | 2 cut(s) | 74, 236 |
| AoxI | GGCC | 7 cut(s) | 66, 178, 183, 310, 383, 462, 718 |
| ApeKI | GCWGC | 2 cut(s) | 270, 568 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 669 |
| AspLEI | GCGC | 3 cut(s) | 221, 299, 309 |
| AspS9I | GGNCC | 5 cut(s) | 66, 139, 179, 241, 646 |
| AsuC2I | CCSGG | 4 cut(s) | 38, 174, 182, 195 |
| AsuHPI | GGTGA | 3 cut(s) | 283, 649, 742 |
| AvaI | CYCGRG | 2 cut(s) | 74, 236 |
| AvaII | GGWCC | 3 cut(s) | 139, 241, 646 |
| BamHI | GGATCC | 1 cut(s) | 96 |
| BbrPI | CACGTG | 1 cut(s) | 253 |
| Bbv12I | GWGCWC | 1 cut(s) | 679 |
| BbvI | GCAGC | 2 cut(s) | 257, 580 |
| BccI | CCATC | 2 cut(s) | 169, 775 |
| BceAI | ACGGC | 3 cut(s) | 283, 457, 463 |
| BciT130I | CCWGG | 1 cut(s) | 317 |
| BclI | TGATCA | 1 cut(s) | 750 |
| BcnI | CCSGG | 4 cut(s) | 38, 174, 182, 195 |
| BfaI | CTAG | 1 cut(s) | 131 |
| BfuAI | ACCTGC | 1 cut(s) | 302 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 360 |
| BlpI | GCTNAGC | 1 cut(s) | 51 |
| Bme1390I | CCNGG | 5 cut(s) | 38, 174, 182, 195, 317 |
| Bme18I | GGWCC | 3 cut(s) | 139, 241, 646 |
| BmeT110I | CYCGRG | 2 cut(s) | 74, 236 |
| BmgBI | CACGTC | 2 cut(s) | 136, 460 |
| BmgT120I | GGNCC | 5 cut(s) | 66, 139, 179, 241, 646 |
| BmiI | GGNNCC | 3 cut(s) | 67, 98, 284 |
| BmrFI | CCNGG | 5 cut(s) | 38, 174, 182, 195, 317 |
| BmsI | GCATC | 2 cut(s) | 545, 567 |
| BpmI | CTGGAG | 1 cut(s) | 93 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 51 |
| BpuMI | CCSGG | 4 cut(s) | 38, 174, 182, 195 |
| Bsa29I | ATCGAT | 1 cut(s) | 81 |
| BsaAI | YACGTR | 2 cut(s) | 253, 770 |
| BsaHI | GRCGYC | 1 cut(s) | 42 |
| BsaJI | CCNNGG | 4 cut(s) | 237, 244, 465, 502 |
| BsaWI | WCCGGW | 2 cut(s) | 121, 141 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 62, 75, 173, 176, 200, 228, 440, 727 |
| Bse1I | ACTGG | 3 cut(s) | 355, 590, 649 |
| BseBI | CCWGG | 1 cut(s) | 317 |
| BseCI | ATCGAT | 1 cut(s) | 81 |
| BseDI | CCNNGG | 4 cut(s) | 237, 244, 465, 502 |
| BseGI | GGATG | 1 cut(s) | 560 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 62, 75, 173, 176, 200, 228, 440, 727 |
| BseMII | CTCAG | 1 cut(s) | 42 |
| BseNI | ACTGG | 3 cut(s) | 355, 590, 649 |
| BseX3I | CGGCCG | 2 cut(s) | 183, 310 |
| BseXI | GCAGC | 2 cut(s) | 257, 580 |
| BsgI | GTGCAG | 1 cut(s) | 614 |
| Bsh1236I | CGCG | 4 cut(s) | 207, 246, 309, 425 |
| Bsh1285I | CGRYCG | 3 cut(s) | 186, 205, 313 |
| BshFI | GGCC | 7 cut(s) | 68, 180, 185, 312, 385, 464, 720 |
| BshVI | ATCGAT | 1 cut(s) | 81 |
| BsiEI | CGRYCG | 3 cut(s) | 186, 205, 313 |
| BsiHKAI | GWGCWC | 1 cut(s) | 679 |
| BsiHKCI | CYCGRG | 2 cut(s) | 74, 236 |
| BsiWI | CGTACG | 1 cut(s) | 770 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 62, 75, 173, 176, 200, 228, 440, 727 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsmI | GAATGC | 1 cut(s) | 309 |
| BsnI | GGCC | 7 cut(s) | 68, 180, 185, 312, 385, 464, 720 |
| BsoBI | CYCGRG | 2 cut(s) | 74, 236 |
| Bsp1286I | GDGCHC | 1 cut(s) | 679 |
| Bsp143I | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 51 |
| BspANI | GGCC | 7 cut(s) | 68, 180, 185, 312, 385, 464, 720 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BspDI | ATCGAT | 1 cut(s) | 81 |
| BspFNI | CGCG | 4 cut(s) | 207, 246, 309, 425 |
| BspHI | TCATGA | 1 cut(s) | 762 |
| BspLI | GGNNCC | 3 cut(s) | 67, 98, 284 |
| BspMI | ACCTGC | 1 cut(s) | 302 |
| BspPI | GGATC | 4 cut(s) | 86, 91, 104, 547 |
| BsrBI | CCGCTC | 1 cut(s) | 388 |
| BsrI | ACTGG | 3 cut(s) | 355, 590, 649 |
| BssECI | CCNNGG | 4 cut(s) | 237, 244, 465, 502 |
| BssMI | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| BssNAI | GTATAC | 1 cut(s) | 790 |
| BssNI | GRCGYC | 1 cut(s) | 42 |
| BssT1I | CCWWGG | 1 cut(s) | 502 |
| Bst1107I | GTATAC | 1 cut(s) | 790 |
| Bst2UI | CCWGG | 1 cut(s) | 317 |
| Bst4CI | ACNGT | 2 cut(s) | 634, 760 |
| BstACI | GRCGYC | 1 cut(s) | 42 |
| BstBAI | YACGTR | 2 cut(s) | 253, 770 |
| BstC8I | GCNNGC | 4 cut(s) | 217, 275, 377, 722 |
| BstDEI | CTNAG | 1 cut(s) | 51 |
| BstDSI | CCRYGG | 1 cut(s) | 244 |
| BstF5I | GGATG | 1 cut(s) | 560 |
| BstFNI | CGCG | 4 cut(s) | 207, 246, 309, 425 |
| BstHHI | GCGC | 3 cut(s) | 221, 299, 309 |
| BstKTI | GATC | 5 cut(s) | 81, 85, 99, 542, 753 |
| BstMBI | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| BstMCI | CGRYCG | 3 cut(s) | 186, 205, 313 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 207, 216, 270, 351, 360, 385, 461 |
| BstNI | CCWGG | 1 cut(s) | 317 |
| BstSCI | CCNGG | 5 cut(s) | 36, 172, 180, 193, 315 |
| BstUI | CGCG | 4 cut(s) | 207, 246, 309, 425 |
| BstV1I | GCAGC | 2 cut(s) | 257, 580 |
| BstX2I | RGATCY | 1 cut(s) | 96 |
| BstYI | RGATCY | 1 cut(s) | 96 |
| BstZ17I | GTATAC | 1 cut(s) | 790 |
| BstZI | CGGCCG | 2 cut(s) | 183, 310 |
| Bsu15I | ATCGAT | 1 cut(s) | 81 |
| BsuRI | GGCC | 7 cut(s) | 68, 180, 185, 312, 385, 464, 720 |
| BsuTUI | ATCGAT | 1 cut(s) | 81 |
| BtgI | CCRYGG | 1 cut(s) | 244 |
| BtrI | CACGTC | 2 cut(s) | 136, 460 |
| BtsCI | GGATG | 1 cut(s) | 560 |
| BtsIMutI | CAGTG | 2 cut(s) | 362, 597 |
| BveI | ACCTGC | 1 cut(s) | 302 |
| Cac8I | GCNNGC | 4 cut(s) | 217, 275, 377, 722 |
| CaiI | CAGNNNCTG | 1 cut(s) | 536 |
| CciI | TCATGA | 1 cut(s) | 762 |
| CciNI | GCGGCCGC | 1 cut(s) | 310 |
| CfoI | GCGC | 3 cut(s) | 221, 299, 309 |
| Cfr13I | GGNCC | 5 cut(s) | 66, 139, 179, 241, 646 |
| Cfr42I | CCGCGG | 1 cut(s) | 247 |
| ClaI | ATCGAT | 1 cut(s) | 81 |
| CseI | GACGC | 3 cut(s) | 50, 414, 461 |
| Csp6I | GTAC | 1 cut(s) | 771 |
| CviAII | CATG | 2 cut(s) | 562, 763 |
| CviQI | GTAC | 1 cut(s) | 771 |
| DdeI | CTNAG | 1 cut(s) | 51 |
| DpnI | GATC | 5 cut(s) | 80, 84, 98, 541, 752 |
| DpnII | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| DraIII | CACNNNGTG | 2 cut(s) | 256, 730 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 338 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 338 |
| EaeI | YGGCCR | 4 cut(s) | 183, 310, 383, 462 |
| EagI | CGGCCG | 2 cut(s) | 183, 310 |
| EciI | GGCGGA | 2 cut(s) | 156, 487 |
| EclXI | CGGCCG | 2 cut(s) | 183, 310 |
| Eco130I | CCWWGG | 1 cut(s) | 502 |
| Eco32I | GATATC | 1 cut(s) | 418 |
| Eco47I | GGWCC | 3 cut(s) | 139, 241, 646 |
| Eco52I | CGGCCG | 2 cut(s) | 183, 310 |
| Eco72I | CACGTG | 1 cut(s) | 253 |
| Eco88I | CYCGRG | 2 cut(s) | 74, 236 |
| EcoRII | CCWGG | 1 cut(s) | 315 |
| EcoRV | GATATC | 1 cut(s) | 418 |
| EcoT14I | CCWWGG | 1 cut(s) | 502 |
| EcoT22I | ATGCAT | 1 cut(s) | 560 |
| ErhI | CCWWGG | 1 cut(s) | 502 |
| FaeI | CATG | 2 cut(s) | 565, 766 |
| FaiI | YATR | 4 cut(s) | 563, 716, 764, 790 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| FatI | CATG | 2 cut(s) | 561, 762 |
| FauI | CCCGC | 1 cut(s) | 356 |
| FbaI | TGATCA | 1 cut(s) | 750 |
| FblI | GTMKAC | 1 cut(s) | 789 |
| FokI | GGATG | 1 cut(s) | 567 |
| FspBI | CTAG | 1 cut(s) | 131 |
| GlaI | GCGC | 3 cut(s) | 220, 298, 308 |
| GsuI | CTGGAG | 1 cut(s) | 93 |
| HaeIII | GGCC | 7 cut(s) | 68, 180, 185, 312, 385, 464, 720 |
| HgaI | GACGC | 3 cut(s) | 50, 414, 461 |
| HhaI | GCGC | 3 cut(s) | 221, 299, 309 |
| Hin1I | GRCGYC | 1 cut(s) | 42 |
| Hin1II | CATG | 2 cut(s) | 565, 766 |
| Hin6I | GCGC | 3 cut(s) | 219, 297, 307 |
| HinP1I | GCGC | 3 cut(s) | 219, 297, 307 |
| HinfI | GANTC | 4 cut(s) | 17, 72, 125, 640 |
| HphI | GGTGA | 3 cut(s) | 283, 649, 742 |
| Hpy166II | GTNNAC | 1 cut(s) | 790 |
| Hpy188I | TCNGA | 2 cut(s) | 532, 664 |
| Hpy188III | TCNNGA | 6 cut(s) | 76, 110, 152, 644, 754, 763 |
| Hpy8I | GTNNAC | 1 cut(s) | 790 |
| Hpy99I | CGWCG | 7 cut(s) | 32, 61, 269, 430, 443, 449, 455 |
| HpyAV | CCTTC | 1 cut(s) | 111 |
| HpyCH4III | ACNGT | 2 cut(s) | 634, 760 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 252, 459, 769 |
| HpyCH4V | TGCA | 3 cut(s) | 558, 595, 740 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 207, 216, 270, 351, 360, 385, 461 |
| HpyF3I | CTNAG | 1 cut(s) | 51 |
| HpySE526I | ACGT | 4 cut(s) | 135, 252, 459, 769 |
| Hsp92I | GRCGYC | 1 cut(s) | 42 |
| Hsp92II | CATG | 2 cut(s) | 565, 766 |
| HspAI | GCGC | 3 cut(s) | 219, 297, 307 |
| Ksp22I | TGATCA | 1 cut(s) | 750 |
| KspI | CCGCGG | 1 cut(s) | 247 |
| Kzo9I | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| LmnI | GCTCC | 1 cut(s) | 47 |
| Lsp1109I | GCAGC | 2 cut(s) | 257, 580 |
| LweI | GCATC | 2 cut(s) | 545, 567 |
| MaeI | CTAG | 1 cut(s) | 131 |
| MaeII | ACGT | 4 cut(s) | 135, 252, 459, 769 |
| MalI | GATC | 5 cut(s) | 80, 84, 98, 541, 752 |
| MbiI | CCGCTC | 1 cut(s) | 388 |
| MboI | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| MboII | GAAGA | 2 cut(s) | 614, 677 |
| MflI | RGATCY | 1 cut(s) | 96 |
| MhlI | GDGCHC | 1 cut(s) | 679 |
| MluCI | AATT | 3 cut(s) | 325, 524, 549 |
| MluI | ACGCGT | 1 cut(s) | 423 |
| MlyI | GAGTC | 1 cut(s) | 66 |
| Mph1103I | ATGCAT | 1 cut(s) | 560 |
| MroXI | GAANNNNTTC | 1 cut(s) | 669 |
| MseI | TTAA | 3 cut(s) | 369, 396, 656 |
| MslI | CAYNNNNRTG | 1 cut(s) | 576 |
| MspA1I | CMGCKG | 1 cut(s) | 246 |
| MspR9I | CCNGG | 5 cut(s) | 38, 174, 182, 195, 317 |
| Mva1269I | GAATGC | 1 cut(s) | 309 |
| MvaI | CCWGG | 1 cut(s) | 317 |
| MvnI | CGCG | 4 cut(s) | 207, 246, 309, 425 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 207, 216, 270, 351, 360, 385, 461 |
| NciI | CCSGG | 4 cut(s) | 38, 174, 182, 195 |
| NdeII | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| NlaIII | CATG | 2 cut(s) | 565, 766 |
| NlaIV | GGNNCC | 3 cut(s) | 67, 98, 284 |
| NmeAIII | GCCGAG | 2 cut(s) | 459, 490 |
| NotI | GCGGCCGC | 1 cut(s) | 310 |
| NsiI | ATGCAT | 1 cut(s) | 560 |
| OliI | CACNNNNGTG | 1 cut(s) | 576 |
| PagI | TCATGA | 1 cut(s) | 762 |
| PaqCI | CACCTGC | 1 cut(s) | 302 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 447 |
| PctI | GAATGC | 1 cut(s) | 309 |
| PdmI | GAANNNNTTC | 1 cut(s) | 669 |
| PfeI | GAWTC | 3 cut(s) | 17, 125, 640 |
| Pfl23II | CGTACG | 1 cut(s) | 770 |
| PflFI | GACNNNGTC | 2 cut(s) | 32, 137 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 727 |
| PfoI | TCCNGGA | 2 cut(s) | 36, 193 |
| PleI | GAGTC | 1 cut(s) | 66 |
| PmaCI | CACGTG | 1 cut(s) | 253 |
| PmlI | CACGTG | 1 cut(s) | 253 |
| PpsI | GAGTC | 1 cut(s) | 66 |
| Ppu21I | YACGTR | 2 cut(s) | 253, 770 |
| Psp6I | CCWGG | 1 cut(s) | 315 |
| PspCI | CACGTG | 1 cut(s) | 253 |
| PspGI | CCWGG | 1 cut(s) | 315 |
| PspLI | CGTACG | 1 cut(s) | 770 |
| PspN4I | GGNNCC | 3 cut(s) | 67, 98, 284 |
| PspPI | GGNCC | 5 cut(s) | 66, 139, 179, 241, 646 |
| PstNI | CAGNNNCTG | 1 cut(s) | 536 |
| PsuI | RGATCY | 1 cut(s) | 96 |
| PsyI | GACNNNGTC | 2 cut(s) | 32, 137 |
| RsaI | GTAC | 1 cut(s) | 772 |
| RsaNI | GTAC | 1 cut(s) | 771 |
| RseI | CAYNNNNRTG | 1 cut(s) | 576 |
| SacII | CCGCGG | 1 cut(s) | 247 |
| SaqAI | TTAA | 3 cut(s) | 369, 396, 656 |
| Sau3AI | GATC | 5 cut(s) | 78, 82, 96, 539, 750 |
| Sau96I | GGNCC | 5 cut(s) | 66, 139, 179, 241, 646 |
| SchI | GAGTC | 1 cut(s) | 66 |
| ScrFI | CCNGG | 5 cut(s) | 38, 174, 182, 195, 317 |
| SduI | GDGCHC | 1 cut(s) | 679 |
| SfaNI | GCATC | 2 cut(s) | 545, 567 |
| Sfr303I | CCGCGG | 1 cut(s) | 247 |
| SgrBI | CCGCGG | 1 cut(s) | 247 |
| SinI | GGWCC | 3 cut(s) | 139, 241, 646 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 576 |
| Sse9I | AATT | 3 cut(s) | 325, 524, 549 |
| SspMI | CTAG | 1 cut(s) | 131 |
| StyD4I | CCNGG | 5 cut(s) | 36, 172, 180, 193, 315 |
| StyI | CCWWGG | 1 cut(s) | 502 |
| TaaI | ACNGT | 2 cut(s) | 634, 760 |
| TaiI | ACGT | 4 cut(s) | 138, 255, 462, 772 |
| TaqI | TCGA | 3 cut(s) | 20, 81, 703 |
| TasI | AATT | 3 cut(s) | 325, 524, 549 |
| TauI | GCSGC | 8 cut(s) | 172, 210, 312, 315, 348, 363, 388, 433 |
| TfiI | GAWTC | 3 cut(s) | 17, 125, 640 |
| Tru1I | TTAA | 3 cut(s) | 369, 396, 656 |
| Tru9I | TTAA | 3 cut(s) | 369, 396, 656 |
| TscAI | CASTG | 2 cut(s) | 362, 597 |
| TseI | GCWGC | 2 cut(s) | 270, 568 |
| TspGWI | ACGGA | 1 cut(s) | 788 |
| TspRI | CASTG | 2 cut(s) | 362, 597 |
| Tth111I | GACNNNGTC | 2 cut(s) | 32, 137 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 727 |
| VpaK11BI | GGWCC | 3 cut(s) | 139, 241, 646 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 409 |
| XmiI | GTMKAC | 1 cut(s) | 789 |
| XmnI | GAANNNNTTC | 1 cut(s) | 669 |
| XspI | CTAG | 1 cut(s) | 131 |
| Zsp2I | ATGCAT | 1 cut(s) | 560 |