Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007623.1

Orthogroup ID

OG0004967

Physical Location & Seq

Genomic Coordinates Reverse (-)

3090 .. 3392

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007623.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggttcaagcgacaattgtgctggaggacatgataaagaccgagtacctaaggaatgagtggtggtattggtcatcgtactcagctgcagcccagacttctactatgtcatccctttccctgcgaatttactccctcgatgctgctatcctgtatgagaaaatgcttccaaattcagacataactgacgacttggagcccagcagcttacttgaccagaatatgctgcctgttgtggattcaacagaaaagttaaagataagtaggaaattgaacaaaaaaaggaaagaaccagagggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain DDT FYRC MBD PHD WHIM1 WSD

Protein Analysis

100

Amino Acids

11.54

Weight (kDa)

4.9

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01460
fragaria_vesca	FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560
malus_domestica	MD09G1035200.v1.1 MD17G1035500.v1.1
prunus_persica	Prupe.3G283100_v2.0.a1
pyrus_communis	pycom111g02810 pycom17g03270
rosa_chinensis	RchiOBHm_Chr2g0171081
rosa_laevigata	RLG00000022001
rosa_multiflora	Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080830
rosa_rugosa	Rorug02G0553500 Rorug02G0553600
rosa_samantha	Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100
rosa_wichuraiana	Rw2G051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	126, 172
AfaI	GTAC	2 cut(s)	47, 80
AgsI	TTSAA	3 cut(s)	8, 243, 274
AluBI	AGCT	2 cut(s)	86, 207
AluI	AGCT	2 cut(s)	86, 207
ApeKI	GCWGC	5 cut(s)	86, 89, 143, 204, 226
ApoI	RAATTY	2 cut(s)	126, 172
AxyI	CCTNAGG	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	5 cut(s)	73, 101, 130, 213, 216
BcgI	CGANNNNNNTGC	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	5 cut(s)	87, 90, 144, 205, 227
BlsI	GCNGC	5 cut(s)	88, 91, 145, 206, 228
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	1 cut(s)	130
BpmI	CTGGAG	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	110
BseMII	CTCAG	1 cut(s)	96
BseXI	GCAGC	5 cut(s)	73, 101, 130, 213, 216
BseYI	CCCAGC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	50, 82
BstF5I	GGATG	1 cut(s)	110
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	73, 101, 130, 213, 216
Bsu36I	CCTNAGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	46, 79
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	4 cut(s)	86, 92, 199, 207
CviKI_1	RGCY	4 cut(s)	86, 92, 199, 207
CviQI	GTAC	2 cut(s)	46, 79
DdeI	CTNAG	2 cut(s)	50, 82
Eco24I	GRGCYC	1 cut(s)	201
Eco81I	CCTNAGG	1 cut(s)	50
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	1 cut(s)	34
FaiI	YATR	5 cut(s)	32, 107, 156, 182, 224
FatI	CATG	1 cut(s)	30
Fnu4HI	GCNGC	5 cut(s)	87, 90, 144, 205, 227
FokI	GGATG	1 cut(s)	97
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	5 cut(s)	87, 90, 144, 205, 227
GluI	GCNGC	5 cut(s)	87, 90, 144, 205, 227
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	89
HpyF3I	CTNAG	2 cut(s)	50, 82
Hsp92II	CATG	1 cut(s)	34
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	8, 107, 134, 164, 214, 230, 243
Lsp1109I	GCAGC	5 cut(s)	73, 101, 130, 213, 216
LweI	GCATC	1 cut(s)	130
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	15, 126, 172, 269
MnlI	CCTC	3 cut(s)	19, 146, 289
MseI	TTAA	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	86
MunI	CAATTG	1 cut(s)	15
NlaIII	CATG	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	5 cut(s)	88, 91, 145, 206, 228
PspFI	CCCAGC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	198
PstI	CTGCAG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	2 cut(s)	47, 80
RsaNI	GTAC	2 cut(s)	46, 79
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	5 cut(s)	87, 90, 144, 205, 227
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	3 cut(s)	51, 88, 209
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	87
Sse9I	AATT	4 cut(s)	15, 126, 172, 269
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	4 cut(s)	15, 126, 172, 269
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TseI	GCWGC	5 cut(s)	86, 89, 143, 204, 226
XapI	RAATTY	2 cut(s)	126, 172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.