methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01460 |
| fragaria_vesca | FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 |
| malus_domestica | MD09G1035200.v1.1 MD17G1035500.v1.1 |
| prunus_persica | Prupe.3G283100_v2.0.a1 |
| pyrus_communis | pycom111g02810 pycom17g03270 |
| rosa_chinensis | RchiOBHm_Chr2g0171081 |
| rosa_laevigata | RLG00000022001 |
| rosa_multiflora | Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080830 |
| rosa_rugosa | Rorug02G0553500 Rorug02G0553600 |
| rosa_samantha | Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100 |
| rosa_wichuraiana | Rw2G051900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1182 |
| Acc36I | ACCTGC | 1 cut(s) | 1020 |
| Acc65I | GGTACC | 1 cut(s) | 2136 |
| AccB1I | GGYRCC | 1 cut(s) | 2136 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2097 |
| AccI | GTMKAC | 2 cut(s) | 1134, 2173 |
| AccII | CGCG | 1 cut(s) | 2964 |
| AciI | CCGC | 6 cut(s) | 13, 356, 1605, 2079, 2627, 2901 |
| AclWI | GGATC | 8 cut(s) | 117, 130, 180, 193, 205, 270, 559, 572 |
| AcoI | YGGCCR | 1 cut(s) | 129 |
| AcsI | RAATTY | 6 cut(s) | 88, 915, 1517, 2004, 2859, 3093 |
| AcyI | GRCGYC | 1 cut(s) | 1179 |
| AdeI | CACNNNGTG | 1 cut(s) | 1703 |
| AfaI | GTAC | 5 cut(s) | 320, 501, 1513, 2023, 2138 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 133, 960, 1495, 1739, 1951, 2097, 2615, 2843 |
| AjnI | CCWGG | 7 cut(s) | 669, 1189, 1569, 2608, 2690, 2957, 3003 |
| Alw21I | GWGCWC | 4 cut(s) | 1081, 1801, 1962, 2608 |
| Alw26I | GTCTC | 7 cut(s) | 144, 692, 836, 1057, 1186, 1668, 2863 |
| Alw44I | GTGCAC | 2 cut(s) | 1797, 2604 |
| AlwI | GGATC | 8 cut(s) | 117, 130, 180, 193, 205, 270, 559, 572 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1055, 3086 |
| AoxI | GGCC | 6 cut(s) | 129, 143, 376, 2165, 2834, 2955 |
| ApaLI | GTGCAC | 2 cut(s) | 1797, 2604 |
| ApoI | RAATTY | 6 cut(s) | 88, 915, 1517, 2004, 2859, 3093 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 151, 183 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 210, 1564, 2529 |
| Asp718I | GGTACC | 1 cut(s) | 2136 |
| AspLEI | GCGC | 3 cut(s) | 2343, 2964, 3206 |
| AsuC2I | CCSGG | 3 cut(s) | 128, 569, 1602 |
| AsuHPI | GGTGA | 3 cut(s) | 1413, 2711, 3172 |
| AsuNHI | GCTAGC | 1 cut(s) | 2575 |
| AvaII | GGWCC | 8 cut(s) | 895, 903, 1709, 1743, 2057, 2815, 3001, 3211 |
| AxyI | CCTNAGG | 2 cut(s) | 899, 1869 |
| BaeGI | GKGCMC | 4 cut(s) | 1801, 2232, 2608, 2938 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2128, 2161 |
| BamHI | GGATCC | 3 cut(s) | 122, 185, 564 |
| BanI | GGYRCC | 1 cut(s) | 2136 |
| BanII | GRGCYC | 2 cut(s) | 1962, 3198 |
| BbsI | GAAGAC | 3 cut(s) | 107, 658, 995 |
| Bbv12I | GWGCWC | 4 cut(s) | 1081, 1801, 1962, 2608 |
| BbvCI | CCTCAGC | 1 cut(s) | 1883 |
| BccI | CCATC | 8 cut(s) | 1108, 1720, 2065, 2231, 2542, 2696, 2935, 2946 |
| BceAI | ACGGC | 1 cut(s) | 1717 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 52, 86, 2998, 3032 |
| BciT130I | CCWGG | 7 cut(s) | 671, 1191, 1571, 2610, 2692, 2959, 3005 |
| BciVI | GTATCC | 3 cut(s) | 1388, 3174, 3280 |
| BcnI | CCSGG | 3 cut(s) | 128, 569, 1602 |
| BcoDI | GTCTC | 7 cut(s) | 144, 692, 836, 1057, 1186, 1668, 2863 |
| BfmI | CTRYAG | 2 cut(s) | 39, 882 |
| BfuAI | ACCTGC | 1 cut(s) | 1020 |
| BfuI | GTATCC | 3 cut(s) | 1388, 3174, 3280 |
| BglII | AGATCT | 2 cut(s) | 2454, 3175 |
| Bme18I | GGWCC | 8 cut(s) | 895, 903, 1709, 1743, 2057, 2815, 3001, 3211 |
| BmiI | GGNNCC | 8 cut(s) | 124, 187, 566, 1744, 2138, 2157, 2817, 3195 |
| BmrI | ACTGGG | 2 cut(s) | 1594, 2163 |
| BmsI | GCATC | 8 cut(s) | 511, 613, 635, 934, 1813, 2203, 2887, 3127 |
| BmtI | GCTAGC | 1 cut(s) | 2579 |
| BmuI | ACTGGG | 2 cut(s) | 1594, 2163 |
| BpiI | GAAGAC | 3 cut(s) | 107, 658, 995 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1451, 1483, 1539, 1571 |
| BpmI | CTGGAG | 3 cut(s) | 2063, 2642, 3041 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1883, 2388 |
| BpuEI | CTTGAG | 5 cut(s) | 236, 848, 1065, 1478, 2858 |
| BpuMI | CCSGG | 3 cut(s) | 128, 569, 1602 |
| Bsa29I | ATCGAT | 1 cut(s) | 2895 |
| BsaHI | GRCGYC | 1 cut(s) | 1179 |
| BsaWI | WCCGGW | 1 cut(s) | 3226 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1387, 1417, 2036, 2066 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 133, 960, 1495, 1739, 1951, 2097, 2615, 2843 |
| Bse118I | RCCGGY | 1 cut(s) | 953 |
| Bse1I | ACTGG | 7 cut(s) | 584, 1509, 1589, 1907, 2169, 2625, 3213 |
| Bse21I | CCTNAGG | 2 cut(s) | 899, 1869 |
| Bse3DI | GCAATG | 1 cut(s) | 2179 |
| BseBI | CCWGG | 7 cut(s) | 671, 1191, 1571, 2610, 2692, 2959, 3005 |
| BseCI | ATCGAT | 1 cut(s) | 2895 |
| BseGI | GGATG | 7 cut(s) | 226, 457, 1318, 1348, 1960, 2085, 2218 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 133, 960, 1495, 1739, 1951, 2097, 2615, 2843 |
| BseMI | GCAATG | 1 cut(s) | 2179 |
| BseNI | ACTGG | 7 cut(s) | 584, 1509, 1589, 1907, 2169, 2625, 3213 |
| BseRI | GAGGAG | 5 cut(s) | 338, 341, 543, 1408, 2060 |
| BseSI | GKGCMC | 4 cut(s) | 1801, 2232, 2608, 2938 |
| BseYI | CCCAGC | 1 cut(s) | 3197 |
| BsgI | GTGCAG | 3 cut(s) | 1170, 1883, 3093 |
| Bsh1236I | CGCG | 1 cut(s) | 2964 |
| BshFI | GGCC | 6 cut(s) | 131, 145, 378, 2167, 2836, 2957 |
| BshNI | GGYRCC | 1 cut(s) | 2136 |
| BshVI | ATCGAT | 1 cut(s) | 2895 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1081, 1801, 1962, 2608 |
| BsiSI | CCGG | 5 cut(s) | 128, 569, 954, 1601, 3227 |
| BslFI | GGGAC | 3 cut(s) | 320, 1901, 2801 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 133, 960, 1495, 1739, 1951, 2097, 2615, 2843 |
| BsmAI | GTCTC | 7 cut(s) | 144, 692, 836, 1057, 1186, 1668, 2863 |
| BsmBI | CGTCTC | 1 cut(s) | 1186 |
| BsmFI | GGGAC | 3 cut(s) | 320, 1901, 2801 |
| BsmI | GAATGC | 2 cut(s) | 1124, 2247 |
| BsnI | GGCC | 6 cut(s) | 131, 145, 378, 2167, 2836, 2957 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1081, 1801, 1962, 2232, 2608, 2938, 3198 |
| Bsp19I | CCATGG | 1 cut(s) | 132 |
| BspACI | CCGC | 6 cut(s) | 13, 356, 1605, 2079, 2627, 2901 |
| BspANI | GGCC | 6 cut(s) | 131, 145, 378, 2167, 2836, 2957 |
| BspDI | ATCGAT | 1 cut(s) | 2895 |
| BspFNI | CGCG | 1 cut(s) | 2964 |
| BspLI | GGNNCC | 8 cut(s) | 124, 187, 566, 1744, 2138, 2157, 2817, 3195 |
| BspMAI | CTGCAG | 1 cut(s) | 43 |
| BspMI | ACCTGC | 1 cut(s) | 1020 |
| BspOI | GCTAGC | 1 cut(s) | 2579 |
| BspPI | GGATC | 8 cut(s) | 117, 130, 180, 193, 205, 270, 559, 572 |
| BspQI | GCTCTTC | 2 cut(s) | 1602, 2331 |
| BspT107I | GGYRCC | 1 cut(s) | 2136 |
| BsrDI | GCAATG | 1 cut(s) | 2179 |
| BsrFI | RCCGGY | 1 cut(s) | 953 |
| BsrI | ACTGG | 7 cut(s) | 584, 1509, 1589, 1907, 2169, 2625, 3213 |
| BssAI | RCCGGY | 1 cut(s) | 953 |
| BssNI | GRCGYC | 1 cut(s) | 1179 |
| BssT1I | CCWWGG | 5 cut(s) | 132, 446, 1802, 1945, 2838 |
| Bst2UI | CCWGG | 7 cut(s) | 671, 1191, 1571, 2610, 2692, 2959, 3005 |
| Bst4CI | ACNGT | 3 cut(s) | 504, 542, 2360 |
| Bst6I | CTCTTC | 4 cut(s) | 723, 1602, 2331, 2445 |
| BstACI | GRCGYC | 1 cut(s) | 1179 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 868 |
| BstC8I | GCNNGC | 4 cut(s) | 354, 1730, 2577, 2674 |
| BstDSI | CCRYGG | 1 cut(s) | 132 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| BstF5I | GGATG | 7 cut(s) | 226, 457, 1318, 1348, 1960, 2085, 2218 |
| BstFNI | CGCG | 1 cut(s) | 2964 |
| BstHHI | GCGC | 3 cut(s) | 2343, 2964, 3206 |
| BstMAI | GTCTC | 7 cut(s) | 144, 692, 836, 1057, 1186, 1668, 2863 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 38, 713, 868, 2047, 2190, 2261 |
| BstNI | CCWGG | 7 cut(s) | 671, 1191, 1571, 2610, 2692, 2959, 3005 |
| BstNSI | RCATGY | 2 cut(s) | 2385, 2676 |
| BstSFI | CTRYAG | 2 cut(s) | 39, 882 |
| BstSLI | GKGCMC | 4 cut(s) | 1801, 2232, 2608, 2938 |
| BstUI | CGCG | 1 cut(s) | 2964 |
| BstV2I | GAAGAC | 3 cut(s) | 107, 658, 995 |
| BstX2I | RGATCY | 5 cut(s) | 122, 185, 564, 2454, 3175 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2041 |
| BstYI | RGATCY | 5 cut(s) | 122, 185, 564, 2454, 3175 |
| Bsu15I | ATCGAT | 1 cut(s) | 2895 |
| Bsu36I | CCTNAGG | 2 cut(s) | 899, 1869 |
| BsuI | GTATCC | 3 cut(s) | 1388, 3174, 3280 |
| BsuRI | GGCC | 6 cut(s) | 131, 145, 378, 2167, 2836, 2957 |
| BsuTUI | ATCGAT | 1 cut(s) | 2895 |
| BtgI | CCRYGG | 1 cut(s) | 132 |
| BtgZI | GCGATG | 2 cut(s) | 612, 3023 |
| BtsCI | GGATG | 7 cut(s) | 226, 457, 1318, 1348, 1960, 2085, 2218 |
| BtsIMutI | CAGTG | 5 cut(s) | 1137, 1900, 1983, 2365, 3206 |
| BveI | ACCTGC | 1 cut(s) | 1020 |
| Cac8I | GCNNGC | 4 cut(s) | 354, 1730, 2577, 2674 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1055, 3086 |
| CfoI | GCGC | 3 cut(s) | 2343, 2964, 3206 |
| Cfr10I | RCCGGY | 1 cut(s) | 953 |
| ClaI | ATCGAT | 1 cut(s) | 2895 |
| CsiI | ACCWGGT | 1 cut(s) | 2608 |
| Csp6I | GTAC | 5 cut(s) | 319, 500, 1512, 2022, 2137 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 454, 489 |
| CviQI | GTAC | 5 cut(s) | 319, 500, 1512, 2022, 2137 |
| DraIII | CACNNNGTG | 1 cut(s) | 1703 |
| EaeI | YGGCCR | 1 cut(s) | 129 |
| Eam1104I | CTCTTC | 4 cut(s) | 723, 1602, 2331, 2445 |
| EarI | CTCTTC | 4 cut(s) | 723, 1602, 2331, 2445 |
| EciI | GGCGGA | 1 cut(s) | 1620 |
| Ecl136II | GAGCTC | 1 cut(s) | 1960 |
| Eco130I | CCWWGG | 5 cut(s) | 132, 446, 1802, 1945, 2838 |
| Eco147I | AGGCCT | 1 cut(s) | 378 |
| Eco24I | GRGCYC | 2 cut(s) | 1962, 3198 |
| Eco32I | GATATC | 1 cut(s) | 748 |
| Eco47I | GGWCC | 8 cut(s) | 895, 903, 1709, 1743, 2057, 2815, 3001, 3211 |
| Eco53kI | GAGCTC | 1 cut(s) | 1960 |
| Eco81I | CCTNAGG | 2 cut(s) | 899, 1869 |
| EcoICRI | GAGCTC | 1 cut(s) | 1960 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| EcoO109I | RGGNCCY | 2 cut(s) | 895, 2835 |
| EcoRI | GAATTC | 2 cut(s) | 88, 1517 |
| EcoRII | CCWGG | 7 cut(s) | 669, 1189, 1569, 2608, 2690, 2957, 3003 |
| EcoRV | GATATC | 1 cut(s) | 748 |
| EcoT14I | CCWWGG | 5 cut(s) | 132, 446, 1802, 1945, 2838 |
| EcoT22I | ATGCAT | 1 cut(s) | 628 |
| EcoT38I | GRGCYC | 2 cut(s) | 1962, 3198 |
| ErhI | CCWWGG | 5 cut(s) | 132, 446, 1802, 1945, 2838 |
| Esp3I | CGTCTC | 1 cut(s) | 1186 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 198, 230, 2278, 2310 |
| FaqI | GGGAC | 3 cut(s) | 320, 1901, 2801 |
| FauNDI | CATATG | 1 cut(s) | 2440 |
| FblI | GTMKAC | 2 cut(s) | 1134, 2173 |
| FokI | GGATG | 7 cut(s) | 233, 464, 1305, 1355, 1967, 2072, 2225 |
| FriOI | GRGCYC | 2 cut(s) | 1962, 3198 |
| GlaI | GCGC | 3 cut(s) | 2342, 2963, 3205 |
| GsaI | CCCAGC | 1 cut(s) | 3201 |
| GsuI | CTGGAG | 3 cut(s) | 2063, 2642, 3041 |
| HaeIII | GGCC | 6 cut(s) | 131, 145, 378, 2167, 2836, 2957 |
| HapII | CCGG | 5 cut(s) | 128, 569, 954, 1601, 3227 |
| HhaI | GCGC | 3 cut(s) | 2343, 2964, 3206 |
| Hin1I | GRCGYC | 1 cut(s) | 1179 |
| Hin6I | GCGC | 3 cut(s) | 2341, 2962, 3204 |
| HinP1I | GCGC | 3 cut(s) | 2341, 2962, 3204 |
| HincII | GTYRAC | 3 cut(s) | 285, 821, 3258 |
| HindII | GTYRAC | 3 cut(s) | 285, 821, 3258 |
| HindIII | AAGCTT | 1 cut(s) | 350 |
| HpaI | GTTAAC | 1 cut(s) | 3258 |
| HpaII | CCGG | 5 cut(s) | 128, 569, 954, 1601, 3227 |
| HphI | GGTGA | 3 cut(s) | 1413, 2711, 3172 |
| Hpy166II | GTNNAC | 9 cut(s) | 285, 757, 821, 1135, 1799, 2174, 2351, 2606, 3258 |
| Hpy8I | GTNNAC | 9 cut(s) | 285, 757, 821, 1135, 1799, 2174, 2351, 2606, 3258 |
| Hpy99I | CGWCG | 2 cut(s) | 30, 660 |
| HpyCH4III | ACNGT | 3 cut(s) | 504, 542, 2360 |
| HpyCH4IV | ACGT | 3 cut(s) | 658, 753, 1179 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 38, 713, 868, 2047, 2190, 2261 |
| HpySE526I | ACGT | 3 cut(s) | 658, 753, 1179 |
| Hsp92I | GRCGYC | 1 cut(s) | 1179 |
| HspAI | GCGC | 3 cut(s) | 2341, 2962, 3204 |
| KpnI | GGTACC | 1 cut(s) | 2140 |
| KspAI | GTTAAC | 1 cut(s) | 3258 |
| LguI | GCTCTTC | 2 cut(s) | 1602, 2331 |
| LmnI | GCTCC | 4 cut(s) | 1965, 2047, 2069, 3193 |
| LweI | GCATC | 8 cut(s) | 511, 613, 635, 934, 1813, 2203, 2887, 3127 |
| MabI | ACCWGGT | 1 cut(s) | 2608 |
| MaeII | ACGT | 3 cut(s) | 658, 753, 1179 |
| MaeIII | GTNAC | 6 cut(s) | 1251, 1419, 1978, 2116, 2470, 2983 |
| MfeI | CAATTG | 1 cut(s) | 2939 |
| MflI | RGATCY | 5 cut(s) | 122, 185, 564, 2454, 3175 |
| MhlI | GDGCHC | 7 cut(s) | 1081, 1801, 1962, 2232, 2608, 2938, 3198 |
| MlyI | GAGTC | 3 cut(s) | 1670, 1883, 2865 |
| MmeI | TCCRAC | 3 cut(s) | 351, 1595, 3171 |
| Mph1103I | ATGCAT | 1 cut(s) | 628 |
| MroXI | GAANNNNTTC | 3 cut(s) | 210, 1564, 2529 |
| MseI | TTAA | 7 cut(s) | 801, 1043, 1853, 2304, 2409, 2973, 3257 |
| MslI | CAYNNNNRTG | 2 cut(s) | 639, 2235 |
| MspA1I | CMGCKG | 3 cut(s) | 182, 2981, 3083 |
| MspI | CCGG | 5 cut(s) | 128, 569, 954, 1601, 3227 |
| MunI | CAATTG | 1 cut(s) | 2939 |
| Mva1269I | GAATGC | 2 cut(s) | 1124, 2247 |
| MvaI | CCWGG | 7 cut(s) | 671, 1191, 1571, 2610, 2692, 2959, 3005 |
| MvnI | CGCG | 1 cut(s) | 2964 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 38, 713, 868, 2047, 2190, 2261 |
| NciI | CCSGG | 3 cut(s) | 128, 569, 1602 |
| NcoI | CCATGG | 1 cut(s) | 132 |
| NdeI | CATATG | 1 cut(s) | 2440 |
| NheI | GCTAGC | 1 cut(s) | 2575 |
| NlaIV | GGNNCC | 8 cut(s) | 124, 187, 566, 1744, 2138, 2157, 2817, 3195 |
| NmeAIII | GCCGAG | 1 cut(s) | 121 |
| NmuCI | GTSAC | 4 cut(s) | 1419, 1978, 2470, 2983 |
| NsiI | ATGCAT | 1 cut(s) | 628 |
| NspI | RCATGY | 2 cut(s) | 2385, 2676 |
| PaeI | GCATGC | 1 cut(s) | 2676 |
| PasI | CCCWGGG | 1 cut(s) | 1570 |
| PceI | AGGCCT | 1 cut(s) | 378 |
| PciSI | GCTCTTC | 2 cut(s) | 1602, 2331 |
| PctI | GAATGC | 2 cut(s) | 1124, 2247 |
| PdmI | GAANNNNTTC | 3 cut(s) | 210, 1564, 2529 |
| PflFI | GACNNNGTC | 1 cut(s) | 1611 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2097 |
| PfoI | TCCNGGA | 2 cut(s) | 567, 2690 |
| PleI | GAGTC | 3 cut(s) | 1670, 1883, 2865 |
| PpsI | GAGTC | 3 cut(s) | 1670, 1883, 2865 |
| PpuMI | RGGWCCY | 1 cut(s) | 895 |
| Psp124BI | GAGCTC | 1 cut(s) | 1962 |
| Psp5II | RGGWCCY | 1 cut(s) | 895 |
| Psp6I | CCWGG | 7 cut(s) | 669, 1189, 1569, 2608, 2690, 2957, 3003 |
| PspFI | CCCAGC | 1 cut(s) | 3197 |
| PspGI | CCWGG | 7 cut(s) | 669, 1189, 1569, 2608, 2690, 2957, 3003 |
| PspN4I | GGNNCC | 8 cut(s) | 124, 187, 566, 1744, 2138, 2157, 2817, 3195 |
| PspPPI | RGGWCCY | 1 cut(s) | 895 |
| PstI | CTGCAG | 1 cut(s) | 43 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1055, 3086 |
| PsuI | RGATCY | 5 cut(s) | 122, 185, 564, 2454, 3175 |
| PsyI | GACNNNGTC | 1 cut(s) | 1611 |
| PvuII | CAGCTG | 3 cut(s) | 182, 2981, 3083 |
| RsaI | GTAC | 5 cut(s) | 320, 501, 1513, 2023, 2138 |
| RsaNI | GTAC | 5 cut(s) | 319, 500, 1512, 2022, 2137 |
| RseI | CAYNNNNRTG | 2 cut(s) | 639, 2235 |
| SacI | GAGCTC | 1 cut(s) | 1962 |
| SapI | GCTCTTC | 2 cut(s) | 1602, 2331 |
| SaqAI | TTAA | 7 cut(s) | 801, 1043, 1853, 2304, 2409, 2973, 3257 |
| SchI | GAGTC | 3 cut(s) | 1670, 1883, 2865 |
| SduI | GDGCHC | 7 cut(s) | 1081, 1801, 1962, 2232, 2608, 2938, 3198 |
| SexAI | ACCWGGT | 1 cut(s) | 2608 |
| SfaNI | GCATC | 8 cut(s) | 511, 613, 635, 934, 1813, 2203, 2887, 3127 |
| SfcI | CTRYAG | 2 cut(s) | 39, 882 |
| SinI | GGWCC | 8 cut(s) | 895, 903, 1709, 1743, 2057, 2815, 3001, 3211 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 639, 2235 |
| SmlI | CTYRAG | 5 cut(s) | 215, 827, 1080, 1457, 2873 |
| SmoI | CTYRAG | 5 cut(s) | 215, 827, 1080, 1457, 2873 |
| SphI | GCATGC | 1 cut(s) | 2676 |
| SseBI | AGGCCT | 1 cut(s) | 378 |
| SsiI | CCGC | 6 cut(s) | 13, 356, 1605, 2079, 2627, 2901 |
| SstI | GAGCTC | 1 cut(s) | 1962 |
| StuI | AGGCCT | 1 cut(s) | 378 |
| StyI | CCWWGG | 5 cut(s) | 132, 446, 1802, 1945, 2838 |
| TaaI | ACNGT | 3 cut(s) | 504, 542, 2360 |
| TaiI | ACGT | 3 cut(s) | 661, 756, 1182 |
| TaqI | TCGA | 6 cut(s) | 1248, 1502, 1521, 1630, 1892, 2895 |
| TatI | WGTACW | 1 cut(s) | 1511 |
| TauI | GCSGC | 3 cut(s) | 15, 2630, 2903 |
| Tru1I | TTAA | 7 cut(s) | 801, 1043, 1853, 2304, 2409, 2973, 3257 |
| Tru9I | TTAA | 7 cut(s) | 801, 1043, 1853, 2304, 2409, 2973, 3257 |
| TscAI | CASTG | 5 cut(s) | 1144, 1907, 1983, 2365, 3213 |
| TseFI | GTSAC | 4 cut(s) | 1419, 1978, 2470, 2983 |
| Tsp45I | GTSAC | 4 cut(s) | 1419, 1978, 2470, 2983 |
| TspGWI | ACGGA | 4 cut(s) | 806, 1749, 2225, 2436 |
| TspRI | CASTG | 5 cut(s) | 1144, 1907, 1983, 2365, 3213 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1611 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2097 |
| VneI | GTGCAC | 2 cut(s) | 1797, 2604 |
| VpaK11BI | GGWCC | 8 cut(s) | 895, 903, 1709, 1743, 2057, 2815, 3001, 3211 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1493 |
| XapI | RAATTY | 6 cut(s) | 88, 915, 1517, 2004, 2859, 3093 |
| XceI | RCATGY | 2 cut(s) | 2385, 2676 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3205 |
| XmiI | GTMKAC | 2 cut(s) | 1134, 2173 |
| XmnI | GAANNNNTTC | 3 cut(s) | 210, 1564, 2529 |
| ZraI | GACGTC | 1 cut(s) | 1180 |
| Zsp2I | ATGCAT | 1 cut(s) | 628 |