methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G01460 |
| fragaria_vesca | FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 |
| malus_domestica | MD09G1035200.v1.1 MD17G1035500.v1.1 |
| prunus_persica | Prupe.3G283100_v2.0.a1 |
| pyrus_communis | pycom111g02810 pycom17g03270 |
| rosa_chinensis | RchiOBHm_Chr2g0171081 |
| rosa_laevigata | RLG00000022001 |
| rosa_multiflora | Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00080830 |
| rosa_rugosa | Rorug02G0553500 Rorug02G0553600 |
| rosa_samantha | Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100 |
| rosa_wichuraiana | Rw2G051900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 308, 1859 |
| AarI | CACCTGC | 1 cut(s) | 3316 |
| Acc36I | ACCTGC | 4 cut(s) | 373, 2889, 3316, 5085 |
| AccB1I | GGYRCC | 2 cut(s) | 503, 902 |
| AccI | GTMKAC | 2 cut(s) | 379, 4063 |
| AccII | CGCG | 1 cut(s) | 2547 |
| AccIII | TCCGGA | 1 cut(s) | 4642 |
| AcoI | YGGCCR | 2 cut(s) | 1277, 4693 |
| AcuI | CTGAAG | 6 cut(s) | 1065, 1999, 2657, 3087, 3225, 4824 |
| AcyI | GRCGYC | 1 cut(s) | 2512 |
| AfaI | GTAC | 7 cut(s) | 415, 2358, 3124, 3467, 4028, 4937, 4970 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 707, 1891, 1993, 3276, 3415, 3629, 3841, 4736 |
| AflIII | ACRYGT | 1 cut(s) | 2545 |
| AhlI | ACTAGT | 1 cut(s) | 1349 |
| AjnI | CCWGG | 3 cut(s) | 499, 897, 3484 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3822, 3854 |
| Alw21I | GWGCWC | 4 cut(s) | 725, 1128, 1776, 4139 |
| Alw26I | GTCTC | 4 cut(s) | 2144, 3229, 3552, 4654 |
| Alw44I | GTGCAC | 1 cut(s) | 4135 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1597 |
| Ama87I | CYCGRG | 3 cut(s) | 440, 724, 2952 |
| Aor13HI | TCCGGA | 1 cut(s) | 4642 |
| AoxI | GGCC | 9 cut(s) | 45, 943, 1277, 1461, 2003, 3037, 3187, 4055, 4693 |
| ApaLI | GTGCAC | 1 cut(s) | 4135 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2192, 2224 |
| AseI | ATTAAT | 4 cut(s) | 1263, 1836, 3723, 4475 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 3448, 4744 |
| AspLEI | GCGC | 3 cut(s) | 783, 1591, 2951 |
| AspS9I | GGNCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| AsuC2I | CCSGG | 2 cut(s) | 139, 2874 |
| AsuII | TTCGAA | 1 cut(s) | 3413 |
| AvaI | CYCGRG | 3 cut(s) | 440, 724, 2952 |
| AvaII | GGWCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| AxyI | CCTNAGG | 6 cut(s) | 1741, 2496, 4141, 4485, 4666, 4940 |
| BaeGI | GKGCMC | 3 cut(s) | 508, 905, 4139 |
| BalI | TGGCCA | 2 cut(s) | 1279, 4695 |
| BamHI | GGATCC | 4 cut(s) | 729, 1672, 2045, 2421 |
| BanI | GGYRCC | 2 cut(s) | 503, 902 |
| BanII | GRGCYC | 1 cut(s) | 5091 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4782, 4814 |
| Bbv12I | GWGCWC | 4 cut(s) | 725, 1128, 1776, 4139 |
| BbvCI | CCTCAGC | 1 cut(s) | 672 |
| BceAI | ACGGC | 2 cut(s) | 2499, 3118 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 55, 89, 2698, 2732, 3044, 3078, 4891, 4925 |
| BciT130I | CCWGG | 3 cut(s) | 501, 899, 3486 |
| BciVI | GTATCC | 3 cut(s) | 3202, 3272, 4555 |
| BclI | TGATCA | 2 cut(s) | 691, 2122 |
| BcnI | CCSGG | 2 cut(s) | 139, 2874 |
| BcoDI | GTCTC | 4 cut(s) | 2144, 3229, 3552, 4654 |
| BcuI | ACTAGT | 1 cut(s) | 1349 |
| BfmI | CTRYAG | 9 cut(s) | 2742, 3009, 3396, 3675, 4149, 4188, 4464, 4566, 4977 |
| BfoI | RGCGCY | 2 cut(s) | 784, 2952 |
| BfuAI | ACCTGC | 4 cut(s) | 373, 2889, 3316, 5085 |
| BfuI | GTATCC | 3 cut(s) | 3202, 3272, 4555 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 668 |
| BglII | AGATCT | 2 cut(s) | 868, 4344 |
| BlpI | GCTNAGC | 1 cut(s) | 4527 |
| Bme1390I | CCNGG | 5 cut(s) | 139, 501, 899, 2874, 3486 |
| Bme18I | GGWCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| BmeT110I | CYCGRG | 3 cut(s) | 440, 724, 2952 |
| BmgT120I | GGNCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| BmrFI | CCNGG | 5 cut(s) | 139, 501, 899, 2874, 3486 |
| BmrI | ACTGGG | 3 cut(s) | 502, 3478, 4708 |
| BmuI | ACTGGG | 3 cut(s) | 502, 3478, 4708 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 718, 750, 3335, 3367, 4334, 4366 |
| BpmI | CTGGAG | 5 cut(s) | 1203, 1440, 3039, 3953, 4934 |
| Bpu10I | CCTNAGC | 1 cut(s) | 672 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4527 |
| Bpu14I | TTCGAA | 1 cut(s) | 3413 |
| BpuEI | CTTGAG | 7 cut(s) | 851, 1352, 2050, 2744, 3362, 4133, 4751 |
| BpuMI | CCSGG | 2 cut(s) | 139, 2874 |
| Bsa29I | ATCGAT | 1 cut(s) | 2708 |
| BsaAI | YACGTR | 2 cut(s) | 923, 2108 |
| BsaBI | GATNNNNATC | 3 cut(s) | 1671, 1838, 2737 |
| BsaHI | GRCGYC | 1 cut(s) | 2512 |
| BsaI | GGTCTC | 2 cut(s) | 3552, 4654 |
| BsaWI | WCCGGW | 2 cut(s) | 1022, 4642 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3314, 3344 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 707, 1891, 1993, 3276, 3415, 3629, 3841, 4736 |
| Bse1I | ACTGG | 9 cut(s) | 508, 1164, 1704, 3473, 3797, 3832, 4535, 4558, 4714 |
| Bse21I | CCTNAGG | 6 cut(s) | 1741, 2496, 4141, 4485, 4666, 4940 |
| Bse3DI | GCAATG | 4 cut(s) | 557, 1035, 1741, 4069 |
| Bse8I | GATNNNNATC | 3 cut(s) | 1671, 1838, 2737 |
| BseAI | TCCGGA | 1 cut(s) | 4642 |
| BseBI | CCWGG | 3 cut(s) | 501, 899, 3486 |
| BseCI | ATCGAT | 1 cut(s) | 2708 |
| BseJI | GATNNNNATC | 3 cut(s) | 1671, 1838, 2737 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 707, 1891, 1993, 3276, 3415, 3629, 3841, 4736 |
| BseMI | GCAATG | 4 cut(s) | 557, 1035, 1741, 4069 |
| BseNI | ACTGG | 9 cut(s) | 508, 1164, 1704, 3473, 3797, 3832, 4535, 4558, 4714 |
| BseRI | GAGGAG | 4 cut(s) | 693, 2198, 2400, 4473 |
| BseSI | GKGCMC | 3 cut(s) | 508, 905, 4139 |
| BseYI | CCCAGC | 4 cut(s) | 602, 1930, 1987, 5090 |
| BsgI | GTGCAG | 3 cut(s) | 723, 1140, 3548 |
| Bsh1236I | CGCG | 1 cut(s) | 2547 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2712 |
| BshFI | GGCC | 9 cut(s) | 47, 945, 1279, 1463, 2005, 3039, 3189, 4057, 4695 |
| BshNI | GGYRCC | 2 cut(s) | 503, 902 |
| BshVI | ATCGAT | 1 cut(s) | 2708 |
| BsiEI | CGRYCG | 1 cut(s) | 2712 |
| BsiHKAI | GWGCWC | 4 cut(s) | 725, 1128, 1776, 4139 |
| BsiHKCI | CYCGRG | 3 cut(s) | 440, 724, 2952 |
| BsiSI | CCGG | 5 cut(s) | 138, 1023, 1083, 2874, 4643 |
| BslFI | GGGAC | 5 cut(s) | 1969, 1986, 2856, 3633, 4694 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 707, 1891, 1993, 3276, 3415, 3629, 3841, 4736 |
| BsmAI | GTCTC | 4 cut(s) | 2144, 3229, 3552, 4654 |
| BsmBI | CGTCTC | 1 cut(s) | 2144 |
| BsmFI | GGGAC | 5 cut(s) | 1969, 1986, 2856, 3633, 4694 |
| BsmI | GAATGC | 2 cut(s) | 1004, 3091 |
| BsnI | GGCC | 9 cut(s) | 47, 945, 1279, 1463, 2005, 3039, 3189, 4057, 4695 |
| Bso31I | GGTCTC | 2 cut(s) | 3552, 4654 |
| BsoBI | CYCGRG | 3 cut(s) | 440, 724, 2952 |
| Bsp119I | TTCGAA | 1 cut(s) | 3413 |
| Bsp1286I | GDGCHC | 7 cut(s) | 508, 725, 905, 1128, 1776, 4139, 5091 |
| Bsp13I | TCCGGA | 1 cut(s) | 4642 |
| Bsp1407I | TGTACA | 1 cut(s) | 4026 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4527 |
| Bsp19I | CCATGG | 3 cut(s) | 787, 1317, 1992 |
| BspANI | GGCC | 9 cut(s) | 47, 945, 1279, 1463, 2005, 3039, 3189, 4057, 4695 |
| BspDI | ATCGAT | 1 cut(s) | 2708 |
| BspEI | TCCGGA | 1 cut(s) | 4642 |
| BspFNI | CGCG | 1 cut(s) | 2547 |
| BspHI | TCATGA | 1 cut(s) | 3751 |
| BspMAI | CTGCAG | 3 cut(s) | 4468, 4570, 4981 |
| BspMI | ACCTGC | 4 cut(s) | 373, 2889, 3316, 5085 |
| BspT104I | TTCGAA | 1 cut(s) | 3413 |
| BspT107I | GGYRCC | 2 cut(s) | 503, 902 |
| BspTNI | GGTCTC | 2 cut(s) | 3552, 4654 |
| BsrDI | GCAATG | 4 cut(s) | 557, 1035, 1741, 4069 |
| BsrGI | TGTACA | 1 cut(s) | 4026 |
| BsrI | ACTGG | 9 cut(s) | 508, 1164, 1704, 3473, 3797, 3832, 4535, 4558, 4714 |
| BssNAI | GTATAC | 1 cut(s) | 380 |
| BssNI | GRCGYC | 1 cut(s) | 2512 |
| BssT1I | CCWWGG | 9 cut(s) | 787, 851, 1146, 1317, 1978, 1992, 2303, 2812, 3692 |
| Bst1107I | GTATAC | 1 cut(s) | 380 |
| Bst2UI | CCWGG | 3 cut(s) | 501, 899, 3486 |
| Bst4CI | ACNGT | 9 cut(s) | 568, 1226, 1540, 2354, 2361, 2399, 3970, 4580, 4703 |
| Bst6I | CTCTTC | 5 cut(s) | 615, 2583, 2766, 4221, 4335 |
| BstACI | GRCGYC | 1 cut(s) | 2512 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2728 |
| BstAUI | TGTACA | 1 cut(s) | 4026 |
| BstBAI | YACGTR | 2 cut(s) | 923, 2108 |
| BstBI | TTCGAA | 1 cut(s) | 3413 |
| BstC8I | GCNNGC | 8 cut(s) | 862, 1287, 1400, 1455, 1776, 3643, 3999, 4570 |
| BstDSI | CCRYGG | 4 cut(s) | 787, 1317, 1992, 2515 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3413 |
| BstFNI | CGCG | 1 cut(s) | 2547 |
| BstH2I | RGCGCY | 2 cut(s) | 784, 2952 |
| BstHHI | GCGC | 3 cut(s) | 783, 1591, 2951 |
| BstMAI | GTCTC | 4 cut(s) | 2144, 3229, 3552, 4654 |
| BstMCI | CGRYCG | 1 cut(s) | 2712 |
| BstNI | CCWGG | 3 cut(s) | 501, 899, 3486 |
| BstNSI | RCATGY | 2 cut(s) | 275, 2888 |
| BstSCI | CCNGG | 5 cut(s) | 137, 499, 897, 2872, 3484 |
| BstSFI | CTRYAG | 9 cut(s) | 2742, 3009, 3396, 3675, 4149, 4188, 4464, 4566, 4977 |
| BstSLI | GKGCMC | 3 cut(s) | 508, 905, 4139 |
| BstSNI | TACGTA | 1 cut(s) | 2108 |
| BstUI | CGCG | 1 cut(s) | 2547 |
| BstX2I | RGATCY | 9 cut(s) | 110, 729, 868, 1672, 2045, 2421, 3110, 3632, 4344 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1683 |
| BstYI | RGATCY | 9 cut(s) | 110, 729, 868, 1672, 2045, 2421, 3110, 3632, 4344 |
| BstZ17I | GTATAC | 1 cut(s) | 380 |
| Bsu15I | ATCGAT | 1 cut(s) | 2708 |
| Bsu36I | CCTNAGG | 6 cut(s) | 1741, 2496, 4141, 4485, 4666, 4940 |
| BsuI | GTATCC | 3 cut(s) | 3202, 3272, 4555 |
| BsuRI | GGCC | 9 cut(s) | 47, 945, 1279, 1463, 2005, 3039, 3189, 4057, 4695 |
| BsuTUI | ATCGAT | 1 cut(s) | 2708 |
| BtgI | CCRYGG | 4 cut(s) | 787, 1317, 1992, 2515 |
| BtsI | GCAGTG | 1 cut(s) | 1112 |
| BtsIMutI | CAGTG | 9 cut(s) | 1112, 1157, 1776, 2359, 3190, 3531, 3873, 4462, 4551 |
| BveI | ACCTGC | 4 cut(s) | 373, 2889, 3316, 5085 |
| Cac8I | GCNNGC | 8 cut(s) | 862, 1287, 1400, 1455, 1776, 3643, 3999, 4570 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1597 |
| CciI | TCATGA | 1 cut(s) | 3751 |
| CfoI | GCGC | 3 cut(s) | 783, 1591, 2951 |
| Cfr13I | GGNCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| ClaI | ATCGAT | 1 cut(s) | 2708 |
| CseI | GACGC | 3 cut(s) | 2472, 2520, 4715 |
| Csp6I | GTAC | 7 cut(s) | 414, 2357, 3123, 3466, 4027, 4936, 4969 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2311, 2346 |
| CviQI | GTAC | 7 cut(s) | 414, 2357, 3123, 3466, 4027, 4936, 4969 |
| DraI | TTTAAA | 2 cut(s) | 915, 1800 |
| EaeI | YGGCCR | 2 cut(s) | 1277, 4693 |
| Eam1104I | CTCTTC | 5 cut(s) | 615, 2583, 2766, 4221, 4335 |
| EarI | CTCTTC | 5 cut(s) | 615, 2583, 2766, 4221, 4335 |
| EciI | GGCGGA | 1 cut(s) | 2070 |
| Eco105I | TACGTA | 1 cut(s) | 2108 |
| Eco130I | CCWWGG | 9 cut(s) | 787, 851, 1146, 1317, 1978, 1992, 2303, 2812, 3692 |
| Eco24I | GRGCYC | 1 cut(s) | 5091 |
| Eco31I | GGTCTC | 2 cut(s) | 3552, 4654 |
| Eco32I | GATATC | 3 cut(s) | 2290, 3976, 4640 |
| Eco47I | GGWCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| Eco57I | CTGAAG | 6 cut(s) | 1065, 1999, 2657, 3087, 3225, 4824 |
| Eco81I | CCTNAGG | 6 cut(s) | 1741, 2496, 4141, 4485, 4666, 4940 |
| Eco88I | CYCGRG | 3 cut(s) | 440, 724, 2952 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3413 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1745, 1983 |
| EcoRI | GAATTC | 3 cut(s) | 1948, 2606, 3574 |
| EcoRII | CCWGG | 3 cut(s) | 499, 897, 3484 |
| EcoRV | GATATC | 3 cut(s) | 2290, 3976, 4640 |
| EcoT14I | CCWWGG | 9 cut(s) | 787, 851, 1146, 1317, 1978, 1992, 2303, 2812, 3692 |
| EcoT22I | ATGCAT | 2 cut(s) | 1006, 3093 |
| EcoT38I | GRGCYC | 1 cut(s) | 5091 |
| ErhI | CCWWGG | 9 cut(s) | 787, 851, 1146, 1317, 1978, 1992, 2303, 2812, 3692 |
| Esp3I | CGTCTC | 1 cut(s) | 2144 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1460, 1492, 3676, 3708, 4168, 4200, 4817, 4849 |
| FaqI | GGGAC | 5 cut(s) | 1969, 1986, 2856, 3633, 4694 |
| FauI | CCCGC | 2 cut(s) | 1194, 1420 |
| FauNDI | CATATG | 4 cut(s) | 1014, 3087, 3300, 4330 |
| FbaI | TGATCA | 2 cut(s) | 691, 2122 |
| FblI | GTMKAC | 2 cut(s) | 379, 4063 |
| FriOI | GRGCYC | 1 cut(s) | 5091 |
| GlaI | GCGC | 3 cut(s) | 782, 1590, 2950 |
| GsaI | CCCAGC | 4 cut(s) | 606, 1934, 1991, 5094 |
| GsuI | CTGGAG | 5 cut(s) | 1203, 1440, 3039, 3953, 4934 |
| HaeII | RGCGCY | 2 cut(s) | 784, 2952 |
| HaeIII | GGCC | 9 cut(s) | 47, 945, 1279, 1463, 2005, 3039, 3189, 4057, 4695 |
| HapII | CCGG | 5 cut(s) | 138, 1023, 1083, 2874, 4643 |
| HgaI | GACGC | 3 cut(s) | 2472, 2520, 4715 |
| HhaI | GCGC | 3 cut(s) | 783, 1591, 2951 |
| Hin1I | GRCGYC | 1 cut(s) | 2512 |
| Hin6I | GCGC | 3 cut(s) | 781, 1589, 2949 |
| HinP1I | GCGC | 3 cut(s) | 781, 1589, 2949 |
| HincII | GTYRAC | 1 cut(s) | 3052 |
| HindII | GTYRAC | 1 cut(s) | 3052 |
| HindIII | AAGCTT | 4 cut(s) | 909, 1659, 2067, 4809 |
| HpaII | CCGG | 5 cut(s) | 138, 1023, 1083, 2874, 4643 |
| Hpy99I | CGWCG | 2 cut(s) | 1890, 2514 |
| HpyCH4III | ACNGT | 9 cut(s) | 568, 1226, 1540, 2354, 2361, 2399, 3970, 4580, 4703 |
| HpyCH4IV | ACGT | 3 cut(s) | 922, 2107, 2153 |
| HpySE526I | ACGT | 3 cut(s) | 922, 2107, 2153 |
| Hsp92I | GRCGYC | 1 cut(s) | 2512 |
| HspAI | GCGC | 3 cut(s) | 781, 1589, 2949 |
| KflI | GGGWCCC | 1 cut(s) | 1983 |
| Kpn2I | TCCGGA | 1 cut(s) | 4642 |
| Ksp22I | TGATCA | 2 cut(s) | 691, 2122 |
| LmnI | GCTCC | 5 cut(s) | 490, 1025, 3279, 4355, 5086 |
| MaeII | ACGT | 3 cut(s) | 922, 2107, 2153 |
| MfeI | CAATTG | 3 cut(s) | 71, 4680, 4905 |
| MflI | RGATCY | 9 cut(s) | 110, 729, 868, 1672, 2045, 2421, 3110, 3632, 4344 |
| MhlI | GDGCHC | 7 cut(s) | 508, 725, 905, 1128, 1776, 4139, 5091 |
| MlsI | TGGCCA | 2 cut(s) | 1279, 4695 |
| MluI | ACGCGT | 1 cut(s) | 2545 |
| MluNI | TGGCCA | 2 cut(s) | 1279, 4695 |
| MmeI | TCCRAC | 6 cut(s) | 324, 550, 2208, 2928, 3942, 4717 |
| Mox20I | TGGCCA | 2 cut(s) | 1279, 4695 |
| Mph1103I | ATGCAT | 2 cut(s) | 1006, 3093 |
| MroI | TCCGGA | 1 cut(s) | 4642 |
| MroXI | GAANNNNTTC | 2 cut(s) | 3448, 4744 |
| MscI | TGGCCA | 2 cut(s) | 1279, 4695 |
| MslI | CAYNNNNRTG | 6 cut(s) | 1013, 1681, 2616, 2883, 3524, 4125 |
| Msp20I | TGGCCA | 2 cut(s) | 1279, 4695 |
| MspA1I | CMGCKG | 5 cut(s) | 1043, 2042, 2669, 4595, 4976 |
| MspI | CCGG | 5 cut(s) | 138, 1023, 1083, 2874, 4643 |
| MspR9I | CCNGG | 5 cut(s) | 139, 501, 899, 2874, 3486 |
| MunI | CAATTG | 3 cut(s) | 71, 4680, 4905 |
| Mva1269I | GAATGC | 2 cut(s) | 1004, 3091 |
| MvaI | CCWGG | 3 cut(s) | 501, 899, 3486 |
| MvnI | CGCG | 1 cut(s) | 2547 |
| NciI | CCSGG | 2 cut(s) | 139, 2874 |
| NcoI | CCATGG | 3 cut(s) | 787, 1317, 1992 |
| NdeI | CATATG | 4 cut(s) | 1014, 3087, 3300, 4330 |
| NmeAIII | GCCGAG | 2 cut(s) | 1981, 3860 |
| NmuCI | GTSAC | 5 cut(s) | 749, 2528, 2559, 3303, 4360 |
| NsiI | ATGCAT | 2 cut(s) | 1006, 3093 |
| NspI | RCATGY | 2 cut(s) | 275, 2888 |
| NspV | TTCGAA | 1 cut(s) | 3413 |
| PaeR7I | CTCGAG | 2 cut(s) | 440, 724 |
| PagI | TCATGA | 1 cut(s) | 3751 |
| PaqCI | CACCTGC | 1 cut(s) | 3316 |
| PctI | GAATGC | 2 cut(s) | 1004, 3091 |
| PdmI | GAANNNNTTC | 2 cut(s) | 3448, 4744 |
| Ple19I | CGATCG | 1 cut(s) | 2712 |
| Ppu21I | YACGTR | 2 cut(s) | 923, 2108 |
| PpuMI | RGGWCCY | 2 cut(s) | 1745, 1983 |
| PshBI | ATTAAT | 4 cut(s) | 1263, 1836, 3723, 4475 |
| PsiI | TTATAA | 2 cut(s) | 308, 1859 |
| Psp5II | RGGWCCY | 2 cut(s) | 1745, 1983 |
| Psp6I | CCWGG | 3 cut(s) | 499, 897, 3484 |
| PspFI | CCCAGC | 4 cut(s) | 602, 1930, 1987, 5090 |
| PspGI | CCWGG | 3 cut(s) | 499, 897, 3484 |
| PspPI | GGNCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| PspPPI | RGGWCCY | 2 cut(s) | 1745, 1983 |
| PspXI | VCTCGAGB | 2 cut(s) | 440, 724 |
| PstI | CTGCAG | 3 cut(s) | 4468, 4570, 4981 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1597 |
| PsuI | RGATCY | 9 cut(s) | 110, 729, 868, 1672, 2045, 2421, 3110, 3632, 4344 |
| PvuI | CGATCG | 1 cut(s) | 2712 |
| PvuII | CAGCTG | 5 cut(s) | 1043, 2042, 2669, 4595, 4976 |
| RsaI | GTAC | 7 cut(s) | 415, 2358, 3124, 3467, 4028, 4937, 4970 |
| RsaNI | GTAC | 7 cut(s) | 414, 2357, 3123, 3466, 4027, 4936, 4969 |
| RseI | CAYNNNNRTG | 6 cut(s) | 1013, 1681, 2616, 2883, 3524, 4125 |
| Sau96I | GGNCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| ScrFI | CCNGG | 5 cut(s) | 139, 501, 899, 2874, 3486 |
| SduI | GDGCHC | 7 cut(s) | 508, 725, 905, 1128, 1776, 4139, 5091 |
| SfcI | CTRYAG | 9 cut(s) | 2742, 3009, 3396, 3675, 4149, 4188, 4464, 4566, 4977 |
| Sfr274I | CTCGAG | 2 cut(s) | 440, 724 |
| SfuI | TTCGAA | 1 cut(s) | 3413 |
| SinI | GGWCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| SlaI | CTCGAG | 2 cut(s) | 440, 724 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 1013, 1681, 2616, 2883, 3524, 4125 |
| SmlI | CTYRAG | 9 cut(s) | 440, 724, 830, 1331, 2029, 2759, 3341, 4112, 4766 |
| SmoI | CTYRAG | 9 cut(s) | 440, 724, 830, 1331, 2029, 2759, 3341, 4112, 4766 |
| SnaBI | TACGTA | 1 cut(s) | 2108 |
| SpeI | ACTAGT | 1 cut(s) | 1349 |
| SspI | AATATT | 2 cut(s) | 253, 3786 |
| StyD4I | CCNGG | 5 cut(s) | 137, 499, 897, 2872, 3484 |
| StyI | CCWWGG | 9 cut(s) | 787, 851, 1146, 1317, 1978, 1992, 2303, 2812, 3692 |
| TaaI | ACNGT | 9 cut(s) | 568, 1226, 1540, 2354, 2361, 2399, 3970, 4580, 4703 |
| TaiI | ACGT | 3 cut(s) | 925, 2110, 2156 |
| TaqII | GACCGA | 2 cut(s) | 2965, 4946 |
| TatI | WGTACW | 4 cut(s) | 2356, 3122, 3465, 4026 |
| TauI | GCSGC | 2 cut(s) | 1895, 1901 |
| TscAI | CASTG | 9 cut(s) | 1119, 1164, 1776, 2359, 3190, 3531, 3873, 4462, 4558 |
| TseFI | GTSAC | 5 cut(s) | 749, 2528, 2559, 3303, 4360 |
| Tsp45I | GTSAC | 5 cut(s) | 749, 2528, 2559, 3303, 4360 |
| TspGWI | ACGGA | 7 cut(s) | 256, 1306, 1843, 1874, 2063, 2547, 3227 |
| TspRI | CASTG | 9 cut(s) | 1119, 1164, 1776, 2359, 3190, 3531, 3873, 4462, 4558 |
| VneI | GTGCAC | 1 cut(s) | 4135 |
| VpaK11BI | GGWCC | 5 cut(s) | 1745, 1983, 2901, 3947, 4708 |
| VspI | ATTAAT | 4 cut(s) | 1263, 1836, 3723, 4475 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3413 |
| XbaI | TCTAGA | 2 cut(s) | 2765, 4757 |
| XceI | RCATGY | 2 cut(s) | 275, 2888 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2433 |
| XhoI | CTCGAG | 2 cut(s) | 440, 724 |
| XmiI | GTMKAC | 2 cut(s) | 379, 4063 |
| XmnI | GAANNNNTTC | 2 cut(s) | 3448, 4744 |
| Zsp2I | ATGCAT | 2 cut(s) | 1006, 3093 |