Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030067.1

Orthogroup ID

OG0004967

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1837

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030067.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 613 bp

tgattctggagagtccaaatcaaagcggggaaggaagaaagatattgactgttctattcctgtgaaaagatcgaagctactcccaattaatgaattgacttggccagagctggcacggagatacatcttggctgtattagccatggatggtaaccttgagtctgctgaaattactagtcgtgaaagcagtaaagtatttcgctgcttacaaggtgatggtggcgtgctttgtggctctttatctggagtagcggggatggaagcagatgcacttttgcttgcagaggccacaaagaaaatctttgcttcacttgatggggaaagtcatgtattcaccatagaagcagaggggtctgatggaacggtgtctgttgaaacaaatttgggaaatgatggtaatataccagcgtgggcgcagatgctggaacctgttagaaagctaccgacaaatgtgggaacaagaatcagaaaatgtgtttatgaagctttggataaggatccaccagaatgggcaaagaaaatactggaacattctatcagtaaggaagtttacaagggcaatgcctcaggacctacaaaggtgcttttctcagtaactttaatatgttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain DDT FYRC MBD PHD WHIM1 WSD

Protein Analysis

203

Amino Acids

22.03

Weight (kDa)

6.23

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01460
fragaria_vesca	FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560
malus_domestica	MD09G1035200.v1.1 MD17G1035500.v1.1
prunus_persica	Prupe.3G283100_v2.0.a1
pyrus_communis	pycom111g02810 pycom17g03270
rosa_chinensis	RchiOBHm_Chr2g0171081
rosa_laevigata	RLG00000022001
rosa_multiflora	Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080830
rosa_rugosa	Rorug02G0553500 Rorug02G0553600
rosa_samantha	Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100
rosa_wichuraiana	Rw2G051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	26, 252
AclWI	GGATC	2 cut(s)	492, 505
AcoI	YGGCCR	1 cut(s)	102
AcsI	RAATTY	1 cut(s)	380
AgsI	TTSAA	1 cut(s)	375
AhlI	ACTAGT	1 cut(s)	174
AluBI	AGCT	4 cut(s)	77, 110, 440, 486
AluI	AGCT	4 cut(s)	77, 110, 440, 486
AlwI	GGATC	2 cut(s)	492, 505
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	102, 286
ApeKI	GCWGC	1 cut(s)	202
ApoI	RAATTY	1 cut(s)	380
AseI	ATTAAT	1 cut(s)	88
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	570
AsuHPI	GGTGA	2 cut(s)	225, 326
AvaII	GGWCC	1 cut(s)	570
AxyI	CCTNAGG	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	104
BamHI	GGATCC	1 cut(s)	497
BbvI	GCAGC	1 cut(s)	189
BccI	CCATC	6 cut(s)	141, 210, 251, 309, 351, 387
BcuI	ACTAGT	1 cut(s)	174
BfaI	CTAG	1 cut(s)	175
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
Bme18I	GGWCC	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	570
BmiI	GGNNCC	2 cut(s)	427, 499
BmsI	GCATC	2 cut(s)	257, 409
BpmI	CTGGAG	2 cut(s)	28, 265
BpuEI	CTTGAG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	496
BsaJI	CCNNGG	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	566
Bse8I	GATNNNNATC	1 cut(s)	496
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	2 cut(s)	152, 262
BseJI	GATNNNNATC	1 cut(s)	496
BseMI	GCAATG	1 cut(s)	566
BseMII	CTCAG	2 cut(s)	580, 604
BseNI	ACTGG	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	189
BshFI	GGCC	2 cut(s)	104, 288
BsnI	GGCC	2 cut(s)	104, 288
Bsp143I	GATC	2 cut(s)	69, 497
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	2 cut(s)	26, 252
BspANI	GGCC	2 cut(s)	104, 288
BspCNI	CTCAG	2 cut(s)	579, 603
BspLI	GGNNCC	2 cut(s)	427, 499
BspPI	GGATC	2 cut(s)	492, 505
BsrDI	GCAATG	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	529
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	2 cut(s)	69, 497
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	51, 365
BstC8I	GCNNGC	3 cut(s)	112, 225, 280
BstDEI	CTNAG	2 cut(s)	566, 590
BstDSI	CCRYGG	1 cut(s)	142
BstEII	GGTNACC	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	152, 262
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	72, 500
BstMBI	GATC	2 cut(s)	69, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstPI	GGTNACC	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	497
BstXI	CCANNNNNNTGG	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	497
Bsu36I	CCTNAGG	1 cut(s)	566
BsuRI	GGCC	2 cut(s)	104, 288
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	152, 262
Cac8I	GCNNGC	3 cut(s)	112, 225, 280
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	570
CviAII	CATG	2 cut(s)	143, 327
CviJI	RGCY	9 cut(s)	77, 104, 110, 132, 141, 235, 288, 440, 486
CviKI_1	RGCY	9 cut(s)	77, 104, 110, 132, 141, 235, 288, 440, 486
DdeI	CTNAG	2 cut(s)	566, 590
DpnI	GATC	2 cut(s)	71, 499
DpnII	GATC	2 cut(s)	69, 497
EaeI	YGGCCR	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	566
Eco91I	GGTNACC	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	570
EcoO65I	GGTNACC	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
FaeI	CATG	2 cut(s)	146, 330
FaiI	YATR	6 cut(s)	144, 328, 339, 402, 481, 605
FalI	AAGNNNNNCTT	2 cut(s)	285, 317
FatI	CATG	2 cut(s)	142, 326
FauI	CCCGC	2 cut(s)	19, 245
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	2 cut(s)	159, 269
Fsp4HI	GCNGC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	175
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	203
GsuI	CTGGAG	2 cut(s)	28, 265
HaeIII	GGCC	2 cut(s)	104, 288
HhaI	GCGC	1 cut(s)	416
Hin1II	CATG	2 cut(s)	146, 330
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	4 cut(s)	3, 12, 159, 463
HphI	GGTGA	2 cut(s)	225, 326
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	2 cut(s)	356, 468
Hpy188III	TCNNGA	4 cut(s)	7, 180, 244, 568
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	51, 365
HpyCH4V	TGCA	2 cut(s)	270, 282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	2 cut(s)	566, 590
Hsp92II	CATG	2 cut(s)	146, 330
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	69, 497
Lsp1109I	GCAGC	1 cut(s)	189
LweI	GCATC	2 cut(s)	257, 409
MaeI	CTAG	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	150, 593
MalI	GATC	2 cut(s)	71, 499
MboI	GATC	2 cut(s)	69, 497
MboII	GAAGA	1 cut(s)	47
MflI	RGATCY	1 cut(s)	497
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	4 cut(s)	85, 93, 169, 380
MluNI	TGGCCA	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	21, 168
MnlI	CCTC	3 cut(s)	278, 341, 575
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MseI	TTAA	3 cut(s)	88, 600, 611
MslI	CAYNNNNRTG	1 cut(s)	506
Msp20I	TGGCCA	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	2 cut(s)	69, 497
NlaIII	CATG	2 cut(s)	146, 330
NlaIV	GGNNCC	2 cut(s)	427, 499
PfeI	GAWTC	2 cut(s)	3, 463
PkrI	GCNGC	1 cut(s)	204
PleI	GAGTC	2 cut(s)	20, 167
PpsI	GAGTC	2 cut(s)	20, 167
PpuMI	RGGWCCY	1 cut(s)	570
PshBI	ATTAAT	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	570
PspEI	GGTNACC	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	427, 499
PspPI	GGNCC	1 cut(s)	570
PspPPI	RGGWCCY	1 cut(s)	570
PstNI	CAGNNNCTG	1 cut(s)	422
PsuI	RGATCY	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	506
SaqAI	TTAA	3 cut(s)	88, 600, 611
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	2 cut(s)	69, 497
Sau96I	GGNCC	1 cut(s)	570
SchI	GAGTC	2 cut(s)	21, 168
SetI	ASST	9 cut(s)	79, 112, 157, 215, 431, 442, 488, 575, 583
SfaNI	GCATC	2 cut(s)	257, 409
SinI	GGWCC	1 cut(s)	570
SmiMI	CAYNNNNRTG	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
SpeI	ACTAGT	1 cut(s)	174
Sse9I	AATT	4 cut(s)	85, 93, 169, 380
SsiI	CCGC	2 cut(s)	26, 252
SspMI	CTAG	1 cut(s)	175
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	2 cut(s)	51, 365
TaqI	TCGA	1 cut(s)	72
TasI	AATT	4 cut(s)	85, 93, 169, 380
TfiI	GAWTC	2 cut(s)	3, 463
Tru1I	TTAA	3 cut(s)	88, 600, 611
Tru9I	TTAA	3 cut(s)	88, 600, 611
TseI	GCWGC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	106, 496
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	570
VspI	ATTAAT	1 cut(s)	88
XapI	RAATTY	1 cut(s)	380
XspI	CTAG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.