Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396081.1

Orthogroup ID

OG0004967

Physical Location & Seq

Genomic Coordinates Reverse (-)

80 .. 1069

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgtttctggagaagttatatggtccatgctttgagttggaaactgttgatatcttaaaaaagcaggggaagcgagctagaataactaatgatgagaaaatgtacaggtgtgattgtttggaaccaatttggccttgtagacaccattgcttctcttgccacaggacctttttgactgatgttgaacttgaggggcataatgatggtaggtgcatgtcaggtgctgcagcctgtgagaagggcaaggaaaaaagtgattcttctatagttaagggaagtctgaattgtgtgatgaatagggaagagttcagaggtgagctgaaaaatgttgaaacttccagaagtgtcagttctgagcttaacgcgaagttgattaagtatcagaacgaaggatttgtttgcccatatgatttggaagagatctgctccaagtttgtgacaaatgattcaaataaggatttgatacaggatataggtcttataggctcaaatgggattccatcttttgttccatcctcatccccttacctcagtgattctgcagttgcattaattactcctcaggaagatgtaggtgaacttggaattggacaggaggctgctgagccaccagtttcagaaggaaacactggtgcggatactgcaggctgcaacagtcattgtgggtcagctgatgggctacaagtgctaaacgccaatagacaaactttcagatatctggaacgaagaaatatgagacccttgggtagtcattcaattgtggggggtggccaattctgtgtggtcccccagtcctctttgcgtcctttagttggaaaagtttctgagatttctagacgactcaagataaatcttcttgacatggaagctgcattacctgaagaagctttaagaccatcaaaggcacagttggaaaggagatgggcgtggcgtggatttgttaagtccgcatccacaatatatgaggttagtcttatactcttattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain DDT FYRC MBD PHD WHIM1 WSD

Protein Analysis

329

Amino Acids

36.42

Weight (kDa)

5.81

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01460
fragaria_vesca	FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560
malus_domestica	MD09G1035200.v1.1 MD17G1035500.v1.1
prunus_persica	Prupe.3G283100_v2.0.a1
pyrus_communis	pycom111g02810 pycom17g03270
rosa_chinensis	RchiOBHm_Chr2g0171081
rosa_laevigata	RLG00000022001
rosa_multiflora	Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080830
rosa_rugosa	Rorug02G0553500 Rorug02G0553600
rosa_samantha	Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100
rosa_wichuraiana	Rw2G051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	139
AccII	CGCG	1 cut(s)	365
AciI	CCGC	2 cut(s)	635, 948
AcoI	YGGCCR	1 cut(s)	769
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	1 cut(s)	812
AgsI	TTSAA	4 cut(s)	185, 332, 450, 756
AjuI	GAANNNNNNNTTGG	2 cut(s)	570, 602
AluBI	AGCT	6 cut(s)	77, 319, 358, 671, 869, 887
AluI	AGCT	6 cut(s)	77, 319, 358, 671, 869, 887
Alw26I	GTCTC	1 cut(s)	730
AlwNI	CAGNNNCTG	1 cut(s)	224
AoxI	GGCC	2 cut(s)	131, 769
ApeKI	GCWGC	5 cut(s)	224, 227, 599, 648, 869
AseI	ATTAAT	1 cut(s)	551
Asp700I	GAANNNNTTC	1 cut(s)	820
AspS9I	GGNCC	3 cut(s)	23, 165, 784
AsuHPI	GGTGA	2 cut(s)	326, 587
AvaII	GGWCC	3 cut(s)	23, 165, 784
AxyI	CCTNAGG	1 cut(s)	561
BalI	TGGCCA	1 cut(s)	771
BarI	GAAGNNNNNNTAC	2 cut(s)	858, 890
BbvI	GCAGC	5 cut(s)	211, 239, 586, 635, 856
BccI	CCATC	6 cut(s)	197, 508, 520, 668, 904, 915
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	1 cut(s)	730
BfaI	CTAG	2 cut(s)	78, 834
BfmI	CTRYAG	4 cut(s)	225, 264, 540, 642
BfuI	GTATCC	1 cut(s)	631
BglII	AGATCT	1 cut(s)	420
BisI	GCNGC	5 cut(s)	225, 228, 600, 649, 870
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	5 cut(s)	226, 229, 601, 650, 871
Bme18I	GGWCC	3 cut(s)	23, 165, 784
BmgT120I	GGNCC	3 cut(s)	23, 165, 784
BmiI	GGNNCC	2 cut(s)	123, 786
BmrI	ACTGGG	1 cut(s)	784
BmsI	GCATC	1 cut(s)	959
BmuI	ACTGGG	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	410, 442
BpmI	CTGGAG	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	2 cut(s)	209, 827
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse1I	ACTGG	3 cut(s)	611, 634, 790
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	3 cut(s)	512, 518, 950
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	5 cut(s)	345, 544, 575, 594, 816
BseNI	ACTGG	3 cut(s)	611, 634, 790
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	5 cut(s)	211, 239, 586, 635, 856
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	2 cut(s)	133, 771
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	770
BsnI	GGCC	2 cut(s)	133, 771
Bso31I	GGTCTC	1 cut(s)	730
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	420
Bsp1720I	GCTNAGC	1 cut(s)	603
BspACI	CCGC	2 cut(s)	635, 948
BspANI	GGCC	2 cut(s)	133, 771
BspCNI	CTCAG	5 cut(s)	346, 543, 574, 595, 817
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	2 cut(s)	123, 786
BspMAI	CTGCAG	3 cut(s)	229, 544, 646
BspTNI	GGTCTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	3 cut(s)	611, 634, 790
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	46, 656, 909
Bst6I	CTCTTC	2 cut(s)	297, 411
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	75, 646
BstDEI	CTNAG	5 cut(s)	354, 530, 561, 603, 825
BstF5I	GGATG	3 cut(s)	512, 518, 950
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	1 cut(s)	423
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	1 cut(s)	420
BstMWI	GCNNNNNNNGC	4 cut(s)	70, 156, 641, 685
BstNSI	RCATGY	1 cut(s)	217
BstSFI	CTRYAG	4 cut(s)	225, 264, 540, 642
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	5 cut(s)	211, 239, 586, 635, 856
BstX2I	RGATCY	1 cut(s)	420
BstYI	RGATCY	1 cut(s)	420
Bsu36I	CCTNAGG	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	133, 771
BtsCI	GGATG	3 cut(s)	512, 518, 950
BtsIMutI	CAGTG	2 cut(s)	538, 627
Cac8I	GCNNGC	2 cut(s)	75, 646
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr13I	GGNCC	3 cut(s)	23, 165, 784
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	27, 214, 862
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	5 cut(s)	354, 530, 561, 603, 825
DpnI	GATC	1 cut(s)	422
DpnII	GATC	1 cut(s)	420
EaeI	YGGCCR	1 cut(s)	769
Eam1104I	CTCTTC	2 cut(s)	297, 411
EarI	CTCTTC	2 cut(s)	297, 411
Eco130I	CCWWGG	1 cut(s)	741
Eco31I	GGTCTC	1 cut(s)	730
Eco32I	GATATC	2 cut(s)	52, 716
Eco47I	GGWCC	3 cut(s)	23, 165, 784
Eco57I	CTGAAG	1 cut(s)	900
Eco81I	CCTNAGG	1 cut(s)	561
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRV	GATATC	2 cut(s)	52, 716
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	3 cut(s)	30, 217, 865
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	3 cut(s)	26, 213, 861
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	5 cut(s)	225, 228, 600, 649, 870
FokI	GGATG	3 cut(s)	499, 505, 937
Fsp4HI	GCNGC	5 cut(s)	225, 228, 600, 649, 870
FspBI	CTAG	2 cut(s)	78, 834
GluI	GCNGC	5 cut(s)	225, 228, 600, 649, 870
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	133, 771
HgaI	GACGC	1 cut(s)	791
Hin1II	CATG	3 cut(s)	30, 217, 865
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	5 cut(s)	257, 446, 496, 536, 840
HphI	GGTGA	2 cut(s)	326, 587
Hpy166II	GTNNAC	2 cut(s)	140, 578
Hpy188I	TCNGA	7 cut(s)	282, 311, 355, 384, 619, 713, 826
Hpy188III	TCNNGA	7 cut(s)	8, 339, 563, 719, 834, 844, 857
Hpy8I	GTNNAC	2 cut(s)	140, 578
HpyAV	CCTTC	3 cut(s)	232, 383, 614
HpyCH4III	ACNGT	3 cut(s)	46, 656, 909
HpyCH4V	TGCA	7 cut(s)	213, 227, 542, 548, 644, 651, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	70, 156, 641, 685
HpyF3I	CTNAG	5 cut(s)	354, 530, 561, 603, 825
Hsp92II	CATG	3 cut(s)	30, 217, 865
Kzo9I	GATC	1 cut(s)	420
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	5 cut(s)	211, 239, 586, 635, 856
LweI	GCATC	1 cut(s)	959
MaeI	CTAG	2 cut(s)	78, 834
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	422
MboI	GATC	1 cut(s)	420
MboII	GAAGA	7 cut(s)	252, 314, 428, 578, 738, 845, 893
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	1 cut(s)	420
MlsI	TGGCCA	1 cut(s)	771
MluCI	AATT	6 cut(s)	126, 283, 552, 585, 756, 773
MluNI	TGGCCA	1 cut(s)	771
MlyI	GAGTC	1 cut(s)	834
MmeI	TCCRAC	3 cut(s)	18, 793, 891
MnlI	CCTC	8 cut(s)	184, 305, 526, 539, 570, 589, 805, 958
Mox20I	TGGCCA	1 cut(s)	771
MroXI	GAANNNNTTC	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	771
MseI	TTAA	7 cut(s)	56, 270, 360, 375, 551, 890, 942
MslI	CAYNNNNRTG	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	771
MspA1I	CMGCKG	1 cut(s)	671
MunI	CAATTG	1 cut(s)	756
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	4 cut(s)	70, 156, 641, 685
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	1 cut(s)	420
NlaIII	CATG	3 cut(s)	30, 217, 865
NlaIV	GGNNCC	2 cut(s)	123, 786
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	820
PfeI	GAWTC	4 cut(s)	257, 446, 496, 536
PkrI	GCNGC	5 cut(s)	226, 229, 601, 650, 871
PleI	GAGTC	1 cut(s)	834
PpsI	GAGTC	1 cut(s)	834
PpuMI	RGGWCCY	1 cut(s)	165
PshBI	ATTAAT	1 cut(s)	551
Psp5II	RGGWCCY	1 cut(s)	165
PspN4I	GGNNCC	2 cut(s)	123, 786
PspPI	GGNCC	3 cut(s)	23, 165, 784
PspPPI	RGGWCCY	1 cut(s)	165
PstI	CTGCAG	3 cut(s)	229, 544, 646
PstNI	CAGNNNCTG	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	420
PvuII	CAGCTG	1 cut(s)	671
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	7 cut(s)	56, 270, 360, 375, 551, 890, 942
SatI	GCNGC	5 cut(s)	225, 228, 600, 649, 870
Sau3AI	GATC	1 cut(s)	420
Sau96I	GGNCC	3 cut(s)	23, 165, 784
SchI	GAGTC	1 cut(s)	834
SfaNI	GCATC	1 cut(s)	959
SfcI	CTRYAG	4 cut(s)	225, 264, 540, 642
SinI	GGWCC	3 cut(s)	23, 165, 784
SmiMI	CAYNNNNRTG	1 cut(s)	201
SmlI	CTYRAG	2 cut(s)	188, 842
SmoI	CTYRAG	2 cut(s)	188, 842
Sse9I	AATT	6 cut(s)	126, 283, 552, 585, 756, 773
SsiI	CCGC	2 cut(s)	635, 948
SspMI	CTAG	2 cut(s)	78, 834
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	3 cut(s)	46, 656, 909
TasI	AATT	6 cut(s)	126, 283, 552, 585, 756, 773
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	4 cut(s)	257, 446, 496, 536
Tru1I	TTAA	7 cut(s)	56, 270, 360, 375, 551, 890, 942
Tru9I	TTAA	7 cut(s)	56, 270, 360, 375, 551, 890, 942
TscAI	CASTG	2 cut(s)	538, 634
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	5 cut(s)	224, 227, 599, 648, 869
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	538, 634
VpaK11BI	GGWCC	3 cut(s)	23, 165, 784
VspI	ATTAAT	1 cut(s)	551
XbaI	TCTAGA	1 cut(s)	833
XceI	RCATGY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	820
XspI	CTAG	2 cut(s)	78, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.