Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8292709.1

Orthogroup ID

OG0004967

Physical Location & Seq

Genomic Coordinates Reverse (-)

24 .. 512

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8292709.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atgatggaactgaacgattcgagtagcgacgaagtccgggacgccggagctgagccgacgaggggggccggactcgggatcgatctcaatgagaggatcccttcccctccagaaaccctaccggattcactagacgtggtccggtattatcaagacaatccatctccgccgccgggaggcccggccggagttcccggaggcggtcgcggctctgcctgcgcctcctgtgggaagcccgaggtccgcggacacgtggtggtctgcgacggctgcgagcgagggttccacctcacctgcgccggaatgcgcggccgccaggctgtcaatttggacgagtgggtctgcggcgagtgccagtgcggcggggttaagagcaagcggtggccgctcggtgttaagtccaagcagattttggatatcaacgcgtcgccgccgagcgacggcgacggcgacgctgacgtggccgaggaactgattgagttgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain DDT FYRC MBD PHD WHIM1 WSD

Protein Analysis

162

Amino Acids

16.96

Weight (kDa)

4.6

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004967)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01460
fragaria_vesca	FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560 FvH4_6g50560
malus_domestica	MD09G1035200.v1.1 MD17G1035500.v1.1
prunus_persica	Prupe.3G283100_v2.0.a1
pyrus_communis	pycom111g02810 pycom17g03270
rosa_chinensis	RchiOBHm_Chr2g0171081
rosa_laevigata	RLG00000022001
rosa_multiflora	Rmu_co8292709.1_g000001 Rmu_co8327183.1_g000001 Rmu_co8396081.1_g000001 Rmu_sc0003517.1_g000017 Rmu_sc0004565.1_g000010 Rmu_sc0007623.1_g000002 Rmu_sc0030067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080830
rosa_rugosa	Rorug02G0553500 Rorug02G0553600
rosa_samantha	Rh2AG627100 Rh2BG637000 Rh2CG605900 Rh2DG648600 Rh2DG654100
rosa_wichuraiana	Rw2G051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	302
AasI	GACNNNNNNGTC	1 cut(s)	338
Acc36I	ACCTGC	1 cut(s)	302
AccBSI	CCGCTC	1 cut(s)	388
AccII	CGCG	4 cut(s)	207, 246, 309, 425
AclWI	GGATC	3 cut(s)	86, 91, 104
AcoI	YGGCCR	4 cut(s)	183, 310, 383, 462
AcvI	CACGTG	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	42
AdeI	CACNNNGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	7 cut(s)	62, 75, 173, 176, 200, 228, 440
AflIII	ACRYGT	2 cut(s)	250, 423
AjiI	CACGTC	2 cut(s)	136, 460
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
AlwI	GGATC	3 cut(s)	86, 91, 104
Ama87I	CYCGRG	2 cut(s)	74, 236
AoxI	GGCC	6 cut(s)	66, 178, 183, 310, 383, 462
ApeKI	GCWGC	1 cut(s)	270
AspLEI	GCGC	3 cut(s)	221, 299, 309
AspS9I	GGNCC	4 cut(s)	66, 139, 179, 241
AsuC2I	CCSGG	4 cut(s)	38, 174, 182, 195
AsuHPI	GGTGA	1 cut(s)	283
AvaI	CYCGRG	2 cut(s)	74, 236
AvaII	GGWCC	2 cut(s)	139, 241
BamHI	GGATCC	1 cut(s)	96
BbrPI	CACGTG	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	257
BccI	CCATC	1 cut(s)	169
BceAI	ACGGC	3 cut(s)	283, 457, 463
BciT130I	CCWGG	1 cut(s)	317
BcnI	CCSGG	4 cut(s)	38, 174, 182, 195
BfaI	CTAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	302
BglI	GCCNNNNNGGC	1 cut(s)	360
BisI	GCNGC	9 cut(s)	170, 208, 271, 310, 313, 346, 361, 386, 431
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	9 cut(s)	171, 209, 272, 311, 314, 347, 362, 387, 432
Bme1390I	CCNGG	5 cut(s)	38, 174, 182, 195, 317
Bme18I	GGWCC	2 cut(s)	139, 241
BmeT110I	CYCGRG	2 cut(s)	74, 236
BmgBI	CACGTC	2 cut(s)	136, 460
BmgT120I	GGNCC	4 cut(s)	66, 139, 179, 241
BmiI	GGNNCC	3 cut(s)	67, 98, 284
BmrFI	CCNGG	5 cut(s)	38, 174, 182, 195, 317
BpmI	CTGGAG	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	51
BpuMI	CCSGG	4 cut(s)	38, 174, 182, 195
Bsa29I	ATCGAT	1 cut(s)	81
BsaAI	YACGTR	1 cut(s)	253
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	237, 244, 465
BsaWI	WCCGGW	2 cut(s)	121, 141
Bsc4I	CCNNNNNNNGG	7 cut(s)	62, 75, 173, 176, 200, 228, 440
Bse1I	ACTGG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	3 cut(s)	237, 244, 465
BseLI	CCNNNNNNNGG	7 cut(s)	62, 75, 173, 176, 200, 228, 440
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	355
BseX3I	CGGCCG	2 cut(s)	183, 310
BseXI	GCAGC	1 cut(s)	257
Bsh1236I	CGCG	4 cut(s)	207, 246, 309, 425
Bsh1285I	CGRYCG	3 cut(s)	186, 205, 313
BshFI	GGCC	6 cut(s)	68, 180, 185, 312, 385, 464
BshVI	ATCGAT	1 cut(s)	81
BsiEI	CGRYCG	3 cut(s)	186, 205, 313
BsiHKCI	CYCGRG	2 cut(s)	74, 236
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	7 cut(s)	62, 75, 173, 176, 200, 228, 440
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	6 cut(s)	68, 180, 185, 312, 385, 464
BsoBI	CYCGRG	2 cut(s)	74, 236
Bsp143I	GATC	3 cut(s)	78, 82, 96
Bsp1720I	GCTNAGC	1 cut(s)	51
BspANI	GGCC	6 cut(s)	68, 180, 185, 312, 385, 464
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	81
BspFNI	CGCG	4 cut(s)	207, 246, 309, 425
BspLI	GGNNCC	3 cut(s)	67, 98, 284
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	3 cut(s)	86, 91, 104
BsrBI	CCGCTC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	355
BssECI	CCNNGG	3 cut(s)	237, 244, 465
BssMI	GATC	3 cut(s)	78, 82, 96
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	317
BstACI	GRCGYC	1 cut(s)	42
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	217, 275, 377
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	1 cut(s)	244
BstFNI	CGCG	4 cut(s)	207, 246, 309, 425
BstHHI	GCGC	3 cut(s)	221, 299, 309
BstKTI	GATC	3 cut(s)	81, 85, 99
BstMBI	GATC	3 cut(s)	78, 82, 96
BstMCI	CGRYCG	3 cut(s)	186, 205, 313
BstMWI	GCNNNNNNNGC	7 cut(s)	207, 216, 270, 351, 360, 385, 461
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	5 cut(s)	36, 172, 180, 193, 315
BstUI	CGCG	4 cut(s)	207, 246, 309, 425
BstV1I	GCAGC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BstZI	CGGCCG	2 cut(s)	183, 310
Bsu15I	ATCGAT	1 cut(s)	81
BsuRI	GGCC	6 cut(s)	68, 180, 185, 312, 385, 464
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	244
BtrI	CACGTC	2 cut(s)	136, 460
BtsIMutI	CAGTG	1 cut(s)	362
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	3 cut(s)	217, 275, 377
CciNI	GCGGCCGC	1 cut(s)	310
CfoI	GCGC	3 cut(s)	221, 299, 309
Cfr13I	GGNCC	4 cut(s)	66, 139, 179, 241
Cfr42I	CCGCGG	1 cut(s)	247
ClaI	ATCGAT	1 cut(s)	81
CseI	GACGC	3 cut(s)	50, 414, 461
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	3 cut(s)	80, 84, 98
DpnII	GATC	3 cut(s)	78, 82, 96
DraIII	CACNNNGTG	1 cut(s)	256
DrdI	GACNNNNNNGTC	1 cut(s)	338
DseDI	GACNNNNNNGTC	1 cut(s)	338
EaeI	YGGCCR	4 cut(s)	183, 310, 383, 462
EagI	CGGCCG	2 cut(s)	183, 310
EciI	GGCGGA	1 cut(s)	156
EclXI	CGGCCG	2 cut(s)	183, 310
Eco32I	GATATC	1 cut(s)	418
Eco47I	GGWCC	2 cut(s)	139, 241
Eco52I	CGGCCG	2 cut(s)	183, 310
Eco72I	CACGTG	1 cut(s)	253
Eco88I	CYCGRG	2 cut(s)	74, 236
EcoRII	CCWGG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	418
FaqI	GGGAC	1 cut(s)	53
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	9 cut(s)	170, 208, 271, 310, 313, 346, 361, 386, 431
Fsp4HI	GCNGC	9 cut(s)	170, 208, 271, 310, 313, 346, 361, 386, 431
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	3 cut(s)	220, 298, 308
GluI	GCNGC	9 cut(s)	170, 208, 271, 310, 313, 346, 361, 386, 431
GsuI	CTGGAG	1 cut(s)	93
HaeIII	GGCC	6 cut(s)	68, 180, 185, 312, 385, 464
HgaI	GACGC	3 cut(s)	50, 414, 461
HhaI	GCGC	3 cut(s)	221, 299, 309
Hin1I	GRCGYC	1 cut(s)	42
Hin6I	GCGC	3 cut(s)	219, 297, 307
HinP1I	GCGC	3 cut(s)	219, 297, 307
HinfI	GANTC	3 cut(s)	17, 72, 125
HphI	GGTGA	1 cut(s)	283
Hpy188III	TCNNGA	3 cut(s)	76, 110, 152
Hpy99I	CGWCG	7 cut(s)	32, 61, 269, 430, 443, 449, 455
HpyAV	CCTTC	1 cut(s)	111
HpyCH4IV	ACGT	3 cut(s)	135, 252, 459
HpyF10VI	GCNNNNNNNGC	7 cut(s)	207, 216, 270, 351, 360, 385, 461
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	3 cut(s)	135, 252, 459
Hsp92I	GRCGYC	1 cut(s)	42
HspAI	GCGC	3 cut(s)	219, 297, 307
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	3 cut(s)	78, 82, 96
LmnI	GCTCC	1 cut(s)	47
Lsp1109I	GCAGC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	3 cut(s)	135, 252, 459
MalI	GATC	3 cut(s)	80, 84, 98
MbiI	CCGCTC	1 cut(s)	388
MboI	GATC	3 cut(s)	78, 82, 96
MflI	RGATCY	1 cut(s)	96
MluCI	AATT	1 cut(s)	325
MluI	ACGCGT	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	369, 396
MspA1I	CMGCKG	1 cut(s)	246
MspR9I	CCNGG	5 cut(s)	38, 174, 182, 195, 317
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	4 cut(s)	207, 246, 309, 425
MwoI	GCNNNNNNNGC	7 cut(s)	207, 216, 270, 351, 360, 385, 461
NciI	CCSGG	4 cut(s)	38, 174, 182, 195
NdeII	GATC	3 cut(s)	78, 82, 96
NlaIV	GGNNCC	3 cut(s)	67, 98, 284
NmeAIII	GCCGAG	1 cut(s)	459
NotI	GCGGCCGC	1 cut(s)	310
PaqCI	CACCTGC	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PctI	GAATGC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	17, 125
PflFI	GACNNNGTC	2 cut(s)	32, 137
PfoI	TCCNGGA	2 cut(s)	36, 193
PkrI	GCNGC	9 cut(s)	171, 209, 272, 311, 314, 347, 362, 387, 432
PleI	GAGTC	1 cut(s)	66
PmaCI	CACGTG	1 cut(s)	253
PmlI	CACGTG	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	66
Ppu21I	YACGTR	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	315
PspCI	CACGTG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	67, 98, 284
PspPI	GGNCC	4 cut(s)	66, 139, 179, 241
PsuI	RGATCY	1 cut(s)	96
PsyI	GACNNNGTC	2 cut(s)	32, 137
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	2 cut(s)	369, 396
SatI	GCNGC	9 cut(s)	170, 208, 271, 310, 313, 346, 361, 386, 431
Sau3AI	GATC	3 cut(s)	78, 82, 96
Sau96I	GGNCC	4 cut(s)	66, 139, 179, 241
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	5 cut(s)	38, 174, 182, 195, 317
SetI	ASST	8 cut(s)	52, 138, 243, 255, 291, 296, 462, 488
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	2 cut(s)	139, 241
Sse9I	AATT	1 cut(s)	325
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	5 cut(s)	36, 172, 180, 193, 315
TaiI	ACGT	3 cut(s)	138, 255, 462
TaqI	TCGA	2 cut(s)	20, 81
TasI	AATT	1 cut(s)	325
TauI	GCSGC	8 cut(s)	172, 210, 312, 315, 348, 363, 388, 433
TfiI	GAWTC	2 cut(s)	17, 125
Tru1I	TTAA	2 cut(s)	369, 396
Tru9I	TTAA	2 cut(s)	369, 396
TscAI	CASTG	1 cut(s)	362
TseI	GCWGC	1 cut(s)	270
TspRI	CASTG	1 cut(s)	362
Tth111I	GACNNNGTC	2 cut(s)	32, 137
VpaK11BI	GGWCC	2 cut(s)	139, 241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.